Wall clock time and date at job start Tue Mar 31 2020 11:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46491 * 109.47575 * 2 1 4 4 C 1.34769 * 120.00378 * 269.00571 * 3 2 1 5 5 O 1.21592 * 120.00187 * 43.07508 * 4 3 2 6 6 C 1.47647 * 120.00413 * 223.07585 * 4 3 2 7 7 C 1.40013 * 119.89444 * 331.13658 * 6 4 3 8 8 C 1.36316 * 120.10866 * 179.72036 * 7 6 4 9 9 C 1.40888 * 119.88883 * 0.52754 * 8 7 6 10 10 C 1.41111 * 120.10188 * 179.77040 * 9 8 7 11 11 H 1.07993 * 119.99993 * 8.70878 * 10 9 8 12 12 C 1.40224 * 119.99631 * 188.71146 * 10 9 8 13 13 N 1.30642 * 120.00512 * 26.77756 * 12 10 9 14 14 Si 1.86797 * 119.99857 * 206.77761 * 12 10 9 15 15 H 1.48498 * 109.47399 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47508 * 120.00225 * 14 12 10 17 17 H 1.48504 * 109.47293 * 239.99993 * 14 12 10 18 18 C 1.40890 * 119.79197 * 359.73947 * 9 8 7 19 19 C 1.36314 * 119.89681 * 0.02562 * 18 9 8 20 20 C 1.46509 * 119.99748 * 89.01052 * 3 2 1 21 21 H 1.09000 * 109.46892 * 330.37883 * 20 3 2 22 22 C 1.52992 * 109.47341 * 90.38192 * 20 3 2 23 23 C 1.53002 * 109.47215 * 180.02562 * 22 20 3 24 24 C 1.52997 * 109.46677 * 299.99882 * 23 22 20 25 25 C 1.52995 * 109.47209 * 60.00486 * 24 23 22 26 26 C 1.52999 * 109.46874 * 210.38408 * 20 3 2 27 27 H 1.09008 * 109.46701 * 299.99571 * 26 20 3 28 28 C 1.53000 * 109.47490 * 59.99651 * 26 20 3 29 29 H 1.09006 * 109.47182 * 59.99236 * 1 2 3 30 30 H 1.08991 * 109.47663 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46480 * 300.00155 * 1 2 3 32 32 H 1.09006 * 109.46480 * 239.99845 * 2 1 3 33 33 H 1.09006 * 109.47182 * 120.00764 * 2 1 3 34 34 H 1.08007 * 119.94362 * 359.97438 * 7 6 4 35 35 H 1.07996 * 120.05289 * 180.29322 * 8 7 6 36 36 H 0.97005 * 120.00524 * 180.02562 * 13 12 10 37 37 H 1.08008 * 120.04834 * 180.02562 * 18 9 8 38 38 H 1.07992 * 119.95028 * 179.97438 * 19 18 9 39 39 H 1.09003 * 109.47277 * 300.00335 * 22 20 3 40 40 H 1.09008 * 109.47398 * 59.99717 * 22 20 3 41 41 H 1.09001 * 109.47093 * 60.00254 * 23 22 20 42 42 H 1.09002 * 109.46803 * 180.02562 * 23 22 20 43 43 H 1.09005 * 109.46703 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47294 * 299.99639 * 24 23 22 45 45 H 1.09002 * 109.47128 * 179.97438 * 25 24 23 46 46 H 1.09000 * 109.47684 * 59.99391 * 25 24 23 47 47 H 1.09001 * 109.46700 * 59.99815 * 28 26 20 48 48 H 1.08995 * 109.46968 * 179.97438 * 28 26 20 49 49 H 1.08996 * 109.46850 * 300.00102 * 28 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2622 2.0097 -1.1669 5 8 1.4784 1.9028 -2.0904 6 6 3.4809 2.8282 -1.3241 7 6 4.0504 3.4534 -0.2082 8 6 5.1788 4.2054 -0.3473 9 6 5.7657 4.3621 -1.6185 10 6 6.9310 5.1436 -1.7685 11 1 7.4543 5.5058 -0.8960 12 6 7.4096 5.4498 -3.0505 13 7 6.5840 5.4970 -4.0620 14 14 9.2275 5.7904 -3.3121 15 1 9.9441 5.6755 -2.0166 16 1 9.7824 4.8047 -4.2744 17 1 9.4013 7.1623 -3.8534 18 6 5.1857 3.7357 -2.7394 19 6 4.0600 2.9817 -2.5896 20 6 2.2419 2.0790 1.2686 21 1 1.5533 1.6945 2.0210 22 6 3.6823 1.8489 1.7304 23 6 3.9155 2.5772 3.0556 24 6 3.6749 4.0758 2.8630 25 6 2.2345 4.3059 2.4014 26 6 2.0014 3.5776 1.0756 27 1 2.6901 3.9620 0.3231 28 6 0.5610 3.8077 0.6138 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3632 0.5139 0.8901 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5140 0.8900 34 1 3.5972 3.3362 0.7652 35 1 5.6199 4.6833 0.5148 36 1 6.9151 5.7085 -4.9489 37 1 5.6325 3.8528 -3.7157 38 1 3.6146 2.5015 -3.4482 39 1 3.8536 0.7813 1.8679 40 1 4.3709 2.2334 0.9779 41 1 3.2270 2.1923 3.8078 42 1 4.9418 2.4136 3.3843 43 1 3.8415 4.5948 3.8070 44 1 4.3635 4.4607 2.1108 45 1 2.0629 5.3736 2.2646 46 1 1.5459 3.9210 3.1535 47 1 -0.1275 3.4231 1.3662 48 1 0.3897 4.8753 0.4767 49 1 0.3948 3.2884 -0.3300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340119386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:16 Heat of formation + Delta-G solvation = 46.729257 kcal Electronic energy + Delta-G solvation = -28490.280554 eV Core-core repulsion = 24998.531739 eV Total energy + Delta-G solvation = -3491.748814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.86413 -39.41393 -38.88587 -36.21739 -35.68457 -33.57940 -32.65525 -31.77934 -31.14947 -29.97145 -27.73938 -27.22059 -24.53782 -23.91034 -23.75878 -22.54674 -22.08832 -21.17922 -19.96199 -18.65359 -18.11596 -17.28139 -17.06233 -16.44437 -16.15644 -15.77422 -15.44458 -15.30187 -15.01466 -14.87860 -14.72535 -14.36147 -14.12986 -13.86239 -13.68739 -13.60319 -13.40410 -13.21195 -13.08088 -12.87870 -12.76317 -12.75392 -12.69988 -12.42945 -12.36410 -12.06757 -12.00279 -11.74584 -11.73400 -11.38563 -11.20405 -11.03481 -10.88037 -10.55825 -9.94310 -9.60615 -9.27180 -9.03670 -8.80542 -6.44370 0.50381 1.18325 1.33694 1.39857 1.54212 1.93914 2.12823 2.27615 2.66613 3.60969 3.70049 3.77385 3.87348 4.04507 4.18938 4.28200 4.28870 4.39217 4.40162 4.46091 4.55669 4.57284 4.61150 4.65873 4.69143 4.76920 4.87238 4.89740 4.95254 4.96870 5.04641 5.07701 5.13658 5.21289 5.24874 5.29417 5.32120 5.38086 5.42521 5.43661 5.46559 5.50273 5.61554 5.73632 5.86436 6.03080 6.06927 6.14627 6.21996 6.58199 6.66948 6.80341 6.97091 7.35791 8.06434 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016429 B = 0.004582 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.888591 B = 6109.258684 C = 7026.460324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 N -0.646 5.646 4 C 0.599 3.401 5 O -0.585 6.585 6 C -0.321 4.321 7 C -0.099 4.099 8 C -0.267 4.267 9 C 0.094 3.906 10 C -0.463 4.463 11 H 0.092 0.908 12 C 0.035 3.965 13 N -0.787 5.787 14 Si 0.988 3.012 15 H -0.249 1.249 16 H -0.264 1.264 17 H -0.261 1.261 18 C -0.234 4.234 19 C -0.054 4.054 20 C 0.165 3.835 21 H 0.109 0.891 22 C -0.188 4.188 23 C -0.108 4.108 24 C -0.141 4.141 25 C -0.101 4.101 26 C -0.193 4.193 27 H 0.124 0.876 28 C -0.138 4.138 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.234 0.766 35 H 0.111 0.889 36 H 0.297 0.703 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.051 0.949 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 -5.123 14.505 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.001 4.001 3 N -0.381 5.381 4 C 0.396 3.604 5 O -0.467 6.467 6 C -0.325 4.325 7 C -0.115 4.115 8 C -0.286 4.286 9 C 0.091 3.909 10 C -0.489 4.489 11 H 0.110 0.890 12 C -0.185 4.185 13 N -0.410 5.410 14 Si 0.807 3.193 15 H -0.172 1.172 16 H -0.189 1.189 17 H -0.185 1.185 18 C -0.254 4.254 19 C -0.073 4.073 20 C 0.063 3.937 21 H 0.127 0.873 22 C -0.226 4.226 23 C -0.146 4.146 24 C -0.178 4.178 25 C -0.139 4.139 26 C -0.210 4.210 27 H 0.141 0.859 28 C -0.195 4.195 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.249 0.751 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -4.343 -5.138 13.759 15.316 hybrid contribution 0.536 0.250 -1.317 1.443 sum -3.807 -4.887 12.443 13.900 Atomic orbital electron populations 1.22128 0.95856 1.02412 1.01444 1.21438 0.94755 0.81288 1.02629 1.47489 1.71109 1.14618 1.04839 1.18365 0.83300 0.77370 0.81366 1.90582 1.47843 1.63808 1.44447 1.19423 1.02887 1.15267 0.94945 1.23455 0.93593 0.92618 1.01810 1.20840 1.00755 1.10379 0.96640 1.18164 0.91162 0.89273 0.92304 1.20227 1.07932 1.26650 0.94061 0.88982 1.27147 1.05102 0.91455 0.94804 1.69812 1.39055 1.29453 1.02654 0.85074 0.75288 0.78978 0.79996 1.17223 1.18904 1.18513 1.21349 0.99489 1.04015 1.00523 1.20531 0.95502 0.96218 0.95042 1.21120 0.96947 0.91074 0.84580 0.87330 1.23040 0.97554 1.02272 0.99732 1.21483 1.02789 0.94315 0.95976 1.21805 0.96433 0.97237 1.02309 1.21526 0.97519 1.00098 0.94774 1.23339 0.99612 0.95966 1.02114 0.85940 1.21747 0.96192 1.00995 1.00572 0.95118 0.90111 0.91739 0.93152 0.87706 0.75116 0.87102 0.89194 0.86287 0.90218 0.90588 0.89409 0.89575 0.90915 0.89389 0.92899 0.91592 0.89544 0.91079 0.92972 0.95324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.20 71.98 0.73 -3.18 16 2 C 0.12 3.26 6.14 86.38 0.53 3.79 16 3 N -0.65 -21.43 2.08 -801.44 -1.67 -23.10 16 4 C 0.60 26.43 4.54 86.73 0.39 26.83 16 5 O -0.59 -29.61 16.25 -4.01 -0.07 -29.68 16 6 C -0.32 -15.41 5.58 -19.93 -0.11 -15.52 16 7 C -0.10 -4.22 3.47 22.25 0.08 -4.15 16 8 C -0.27 -12.47 9.31 22.47 0.21 -12.26 16 9 C 0.09 5.01 5.70 -21.28 -0.12 4.89 16 10 C -0.46 -23.57 9.04 23.46 0.21 -23.36 16 11 H 0.09 4.39 7.97 -2.91 -0.02 4.36 16 12 C 0.04 1.68 5.12 85.35 0.44 2.11 16 13 N -0.79 -39.57 10.55 21.87 0.23 -39.33 16 14 Si 0.99 35.27 29.63 68.60 2.03 37.30 16 15 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 16 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 17 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 18 C -0.23 -12.98 8.83 22.47 0.20 -12.78 16 19 C -0.05 -2.86 9.52 22.25 0.21 -2.65 16 20 C 0.17 4.44 1.87 44.99 0.08 4.52 16 21 H 0.11 2.28 8.07 -2.39 -0.02 2.26 16 22 C -0.19 -4.84 5.12 30.59 0.16 -4.69 16 23 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 24 C -0.14 -3.02 5.66 30.59 0.17 -2.84 16 25 C -0.10 -2.24 5.21 30.61 0.16 -2.08 16 26 C -0.19 -5.68 1.47 -10.78 -0.02 -5.70 16 27 H 0.12 4.66 2.79 -58.66 -0.16 4.49 16 28 C -0.14 -4.16 8.94 71.98 0.64 -3.51 16 29 H 0.03 0.96 7.65 -2.38 -0.02 0.94 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.05 1.52 8.02 -2.38 -0.02 1.50 16 33 H 0.10 2.06 8.08 -2.38 -0.02 2.04 16 34 H 0.23 7.88 0.06 -41.04 0.00 7.88 16 35 H 0.11 4.68 7.07 -2.91 -0.02 4.66 16 36 H 0.30 13.22 8.29 -92.70 -0.77 12.45 16 37 H 0.12 6.81 5.38 -2.91 -0.02 6.80 16 38 H 0.08 4.29 7.89 -2.91 -0.02 4.27 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 2.96 3.91 -14.42 -0.06 2.91 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 1.48 8.14 -2.38 -0.02 1.47 16 44 H 0.05 1.43 5.53 -2.39 -0.01 1.41 16 45 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.03 1.06 6.04 -2.39 -0.01 1.04 16 Total: -1.00 -65.50 359.64 5.43 -60.06 By element: Atomic # 1 Polarization: 46.50 SS G_CDS: 0.75 Total: 47.25 kcal Atomic # 6 Polarization: -56.66 SS G_CDS: 4.15 Total: -52.51 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: -1.44 Total: -62.43 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.07 Total: -29.68 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Total: -65.50 5.43 -60.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340119386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.793 kcal (2) G-P(sol) polarization free energy of solvation -65.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds