Wall clock time and date at job start Tue Mar 31 2020 11:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46594 * 2 1 4 4 C 1.34769 * 120.00176 * 90.00572 * 3 2 1 5 5 O 1.21282 * 120.00127 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.99918 * 359.97438 * 4 3 2 7 7 C 1.53002 * 109.47236 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47304 * 54.99628 * 7 6 4 9 9 C 1.50699 * 109.46997 * 294.99760 * 7 6 4 10 10 H 1.07997 * 120.00390 * 325.84724 * 9 7 6 11 11 C 1.37880 * 120.00168 * 145.84094 * 9 7 6 12 12 N 1.31518 * 119.99852 * 6.12341 * 11 9 7 13 13 Si 1.86795 * 120.00195 * 186.12232 * 11 9 7 14 14 H 1.48494 * 109.47397 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47213 * 119.99923 * 13 11 9 16 16 H 1.48505 * 109.47265 * 239.99893 * 13 11 9 17 17 C 1.50700 * 109.47457 * 175.00095 * 7 6 4 18 18 C 1.38235 * 120.00097 * 63.46573 * 17 7 6 19 19 C 1.38230 * 120.00310 * 179.81427 * 18 17 7 20 20 C 1.38240 * 119.99532 * 0.39708 * 19 18 17 21 21 C 1.38234 * 120.00274 * 359.85711 * 20 19 18 22 22 C 1.38231 * 120.00090 * 243.74642 * 17 7 6 23 23 C 1.46500 * 119.99572 * 269.99878 * 3 2 1 24 24 C 1.54273 * 110.03302 * 237.90906 * 23 3 2 25 25 C 1.54966 * 104.16050 * 217.13953 * 24 23 3 26 26 C 1.54888 * 102.77692 * 37.88977 * 25 24 23 27 27 C 1.53881 * 110.03023 * 120.69635 * 23 3 2 28 28 H 1.09002 * 109.46935 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46854 * 299.99359 * 1 2 3 30 30 H 1.08999 * 109.47729 * 59.99897 * 1 2 3 31 31 H 1.08996 * 109.47228 * 120.00093 * 2 1 3 32 32 H 1.09001 * 109.46854 * 240.00641 * 2 1 3 33 33 H 1.08998 * 109.47412 * 300.00382 * 6 4 3 34 34 H 1.09000 * 109.47327 * 59.99918 * 6 4 3 35 35 H 0.96997 * 120.00185 * 180.02562 * 12 11 9 36 36 H 1.08004 * 120.00092 * 359.97438 * 18 17 7 37 37 H 1.08000 * 120.00423 * 180.22864 * 19 18 17 38 38 H 1.08005 * 119.99537 * 179.83682 * 20 19 18 39 39 H 1.07998 * 119.99956 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.99823 * 359.97308 * 22 17 7 41 41 H 1.09000 * 110.02478 * 359.30420 * 23 3 2 42 42 H 1.09002 * 110.48682 * 335.78843 * 24 23 3 43 43 H 1.09004 * 110.48166 * 98.42921 * 24 23 3 44 44 H 1.09002 * 110.71855 * 279.57643 * 25 24 23 45 45 H 1.08998 * 110.91797 * 156.29713 * 25 24 23 46 46 H 1.08995 * 110.48655 * 203.40082 * 26 25 24 47 47 H 1.08999 * 110.60034 * 80.81460 * 26 25 24 48 48 H 1.08998 * 110.02916 * 238.56874 * 27 23 3 49 49 H 1.08995 * 110.02785 * 359.94600 * 27 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2429 2.0166 1.1671 5 8 2.6475 3.1600 1.1671 6 6 1.9914 1.3064 2.4722 7 6 2.3223 2.2439 3.6352 8 1 1.7567 3.1695 3.5280 9 6 3.7973 2.5528 3.6272 10 1 4.5047 1.8017 3.3083 11 6 4.2438 3.7946 4.0270 12 7 3.3976 4.6675 4.5285 13 14 6.0506 4.2369 3.8564 14 1 6.7877 3.0900 3.2681 15 1 6.1889 5.4205 2.9703 16 1 6.6115 4.5524 5.1948 17 6 1.9555 1.5789 4.9368 18 6 2.6008 0.4203 5.3269 19 6 2.2670 -0.1877 6.5226 20 6 1.2821 0.3585 7.3243 21 6 0.6331 1.5141 6.9317 22 6 0.9696 2.1241 5.7377 23 6 2.2623 2.0718 -1.2688 24 6 3.7303 2.5405 -1.3415 25 6 3.6553 3.9121 -2.0587 26 6 2.3597 4.5316 -1.4786 27 6 1.3910 3.3372 -1.3563 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 0.9434 1.0125 2.5299 34 1 2.6213 0.4187 2.5301 35 1 3.7116 5.5412 4.8095 36 1 3.3676 -0.0085 4.6988 37 1 2.7738 -1.0908 6.8293 38 1 1.0194 -0.1180 8.2573 39 1 -0.1367 1.9405 7.5578 40 1 0.4626 3.0270 5.4309 41 1 2.0407 1.4075 -2.1040 42 1 4.1440 2.6562 -0.3396 43 1 4.3269 1.8373 -1.9227 44 1 3.5707 3.7792 -3.1373 45 1 4.5211 4.5273 -1.8136 46 1 1.9570 5.2811 -2.1599 47 1 2.5496 4.9705 -0.4992 48 1 0.7472 3.2871 -2.2344 49 1 0.7860 3.4369 -0.4552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347579368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:52 Heat of formation + Delta-G solvation = -23.612323 kcal Electronic energy + Delta-G solvation = -27729.202183 eV Core-core repulsion = 24234.403129 eV Total energy + Delta-G solvation = -3494.799054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -39.86820 -38.33584 -36.68350 -35.02213 -33.89098 -31.39253 -30.22647 -29.98190 -28.95834 -28.35545 -27.12461 -25.28940 -23.19026 -22.57732 -21.59723 -20.80521 -20.31250 -19.42515 -17.87271 -16.56704 -16.36869 -16.04299 -15.65374 -15.04201 -14.47260 -14.38785 -14.09559 -13.95472 -13.76128 -13.54855 -13.17500 -12.85897 -12.75554 -12.49395 -12.26332 -12.15610 -11.91088 -11.60645 -11.53005 -11.24404 -11.19454 -10.97925 -10.84611 -10.75240 -10.71412 -10.59071 -10.50317 -10.42946 -10.22976 -10.13204 -10.01710 -9.37921 -8.97108 -8.62687 -8.27701 -8.06668 -8.01807 -7.56908 -5.89946 -3.88618 2.31564 2.37752 3.38809 3.46422 3.48485 3.52595 3.62260 4.54830 4.77847 4.85562 4.94677 5.04081 5.23894 5.34009 5.39062 5.47696 5.57039 5.65049 5.68485 5.75512 5.78198 5.79290 5.87032 5.89217 5.93806 5.94744 6.00856 6.14810 6.18302 6.23460 6.25776 6.28230 6.31515 6.36466 6.44049 6.55375 6.58397 6.64384 6.84664 6.85589 6.94737 7.07424 7.24398 7.33650 7.48196 7.56890 7.89705 7.98332 8.06340 8.12713 8.43153 9.11059 9.19818 9.73025 11.20215 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.005565 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.472420 B = 5030.495032 C = 6656.793437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 N -0.628 5.628 4 C 0.514 3.486 5 O -0.483 6.483 6 C -0.121 4.121 7 C 0.080 3.920 8 H 0.071 0.929 9 C -0.488 4.488 10 H 0.049 0.951 11 C 0.080 3.920 12 N -0.880 5.880 13 Si 0.884 3.116 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.289 1.289 17 C -0.020 4.020 18 C -0.116 4.116 19 C -0.132 4.132 20 C -0.156 4.156 21 C -0.128 4.128 22 C -0.119 4.119 23 C 0.152 3.848 24 C -0.136 4.136 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.124 4.124 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.257 0.743 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.082 0.918 48 H 0.054 0.946 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 -8.823 -9.151 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.366 5.366 4 C 0.303 3.697 5 O -0.353 6.353 6 C -0.161 4.161 7 C 0.061 3.939 8 H 0.089 0.911 9 C -0.525 4.525 10 H 0.067 0.933 11 C -0.123 4.123 12 N -0.518 5.518 13 Si 0.713 3.287 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.215 1.215 17 C -0.020 4.020 18 C -0.134 4.134 19 C -0.150 4.150 20 C -0.175 4.175 21 C -0.146 4.146 22 C -0.137 4.137 23 C 0.048 3.952 24 C -0.174 4.174 25 C -0.155 4.155 26 C -0.154 4.154 27 C -0.162 4.162 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.072 0.928 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.534 -7.981 -9.054 13.277 hybrid contribution 1.045 0.190 0.047 1.064 sum -4.488 -7.791 -9.007 12.727 Atomic orbital electron populations 1.22231 0.96581 1.01608 1.02480 1.21434 0.93972 0.83500 1.02578 1.48375 1.68596 1.13783 1.05804 1.20785 0.77190 0.87262 0.84492 1.90727 1.41049 1.17087 1.86445 1.21844 1.00098 1.00166 0.94035 1.17838 0.98207 0.93494 0.84320 0.91082 1.20683 0.90162 0.97934 1.43721 0.93271 1.24779 0.96804 0.96392 0.94342 1.69922 1.33982 1.06569 1.41299 0.86674 0.86199 0.78531 0.77306 1.20028 1.21065 1.21510 1.20759 0.90549 0.91831 0.98906 1.20936 0.99633 0.96504 0.96297 1.20968 0.98432 0.99933 0.95654 1.20786 0.99174 0.97788 0.99713 1.20978 1.00275 0.96326 0.97040 1.21081 0.98256 0.99539 0.94838 1.21534 0.94904 0.93383 0.85390 1.22764 0.95965 0.96091 1.02592 1.22353 0.98313 0.96495 0.98316 1.22256 0.94715 0.96745 1.01731 1.22388 0.97916 0.94731 1.01198 0.92124 0.92128 0.92756 0.90330 0.91407 0.91977 0.90890 0.93294 0.86997 0.87730 0.87862 0.87705 0.86920 0.90551 0.89077 0.92700 0.92548 0.91895 0.92987 0.89978 0.92770 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 10.24 37.16 0.38 -1.41 16 2 C 0.11 1.27 5.91 -4.04 -0.02 1.25 16 3 N -0.63 -9.59 2.43 -164.83 -0.40 -9.99 16 4 C 0.51 10.04 6.28 -10.99 -0.07 9.97 16 5 O -0.48 -11.32 10.98 5.56 0.06 -11.26 16 6 C -0.12 -2.34 3.50 -27.88 -0.10 -2.43 16 7 C 0.08 1.90 1.67 -92.92 -0.16 1.75 16 8 H 0.07 1.94 6.98 -51.93 -0.36 1.58 16 9 C -0.49 -12.96 6.37 -34.44 -0.22 -13.18 16 10 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 11 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 12 N -0.88 -25.75 12.87 55.43 0.71 -25.04 16 13 Si 0.88 22.31 29.54 -169.99 -5.02 17.29 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 C -0.02 -0.44 4.77 -104.63 -0.50 -0.94 16 18 C -0.12 -2.34 8.86 -39.59 -0.35 -2.69 16 19 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 20 C -0.16 -2.74 10.05 -39.58 -0.40 -3.14 16 21 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 22 C -0.12 -2.52 9.67 -39.59 -0.38 -2.91 16 23 C 0.15 2.15 3.35 -66.81 -0.22 1.93 16 24 C -0.14 -2.08 6.08 -25.03 -0.15 -2.24 16 25 C -0.12 -1.66 6.91 -24.70 -0.17 -1.83 16 26 C -0.12 -1.80 6.39 -25.07 -0.16 -1.96 16 27 C -0.12 -1.81 5.79 -25.61 -0.15 -1.96 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.73 7.22 -51.93 -0.37 0.35 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.92 6.44 -51.93 -0.33 0.58 16 32 H 0.07 0.66 7.93 -51.93 -0.41 0.25 16 33 H 0.06 1.08 7.18 -51.93 -0.37 0.70 16 34 H 0.07 1.33 7.04 -51.93 -0.37 0.96 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.11 2.19 7.76 -52.48 -0.41 1.78 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.10 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.11 2.42 7.95 -52.48 -0.42 2.00 16 41 H 0.08 0.89 7.82 -51.93 -0.41 0.49 16 42 H 0.09 1.77 6.12 -51.93 -0.32 1.46 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.56 7.30 -51.93 -0.38 1.18 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.07 1.20 7.10 -51.93 -0.37 0.83 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -30.48 382.66 -10.74 -41.22 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.29 Total: 5.20 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -3.56 Total: -23.19 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.31 Total: -35.03 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.06 Total: -11.26 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.48 -10.74 -41.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347579368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.605 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds