Wall clock time and date at job start Tue Mar 31 2020 11:28:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46506 * 109.46594 * 2 1
4 4 C 1.34769 * 120.00176 * 90.00572 * 3 2 1
5 5 O 1.21282 * 120.00127 * 179.97438 * 4 3 2
6 6 C 1.50699 * 119.99918 * 359.97438 * 4 3 2
7 7 C 1.53002 * 109.47236 * 180.02562 * 6 4 3
8 8 H 1.08996 * 109.47304 * 54.99628 * 7 6 4
9 9 C 1.50699 * 109.46997 * 294.99760 * 7 6 4
10 10 H 1.07997 * 120.00390 * 325.84724 * 9 7 6
11 11 C 1.37880 * 120.00168 * 145.84094 * 9 7 6
12 12 N 1.31518 * 119.99852 * 6.12341 * 11 9 7
13 13 Si 1.86795 * 120.00195 * 186.12232 * 11 9 7
14 14 H 1.48494 * 109.47397 * 0.02562 * 13 11 9
15 15 H 1.48504 * 109.47213 * 119.99923 * 13 11 9
16 16 H 1.48505 * 109.47265 * 239.99893 * 13 11 9
17 17 C 1.50700 * 109.47457 * 175.00095 * 7 6 4
18 18 C 1.38235 * 120.00097 * 63.46573 * 17 7 6
19 19 C 1.38230 * 120.00310 * 179.81427 * 18 17 7
20 20 C 1.38240 * 119.99532 * 0.39708 * 19 18 17
21 21 C 1.38234 * 120.00274 * 359.85711 * 20 19 18
22 22 C 1.38231 * 120.00090 * 243.74642 * 17 7 6
23 23 C 1.46500 * 119.99572 * 269.99878 * 3 2 1
24 24 C 1.54273 * 110.03302 * 237.90906 * 23 3 2
25 25 C 1.54966 * 104.16050 * 217.13953 * 24 23 3
26 26 C 1.54888 * 102.77692 * 37.88977 * 25 24 23
27 27 C 1.53881 * 110.03023 * 120.69635 * 23 3 2
28 28 H 1.09002 * 109.46935 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.46854 * 299.99359 * 1 2 3
30 30 H 1.08999 * 109.47729 * 59.99897 * 1 2 3
31 31 H 1.08996 * 109.47228 * 120.00093 * 2 1 3
32 32 H 1.09001 * 109.46854 * 240.00641 * 2 1 3
33 33 H 1.08998 * 109.47412 * 300.00382 * 6 4 3
34 34 H 1.09000 * 109.47327 * 59.99918 * 6 4 3
35 35 H 0.96997 * 120.00185 * 180.02562 * 12 11 9
36 36 H 1.08004 * 120.00092 * 359.97438 * 18 17 7
37 37 H 1.08000 * 120.00423 * 180.22864 * 19 18 17
38 38 H 1.08005 * 119.99537 * 179.83682 * 20 19 18
39 39 H 1.07998 * 119.99956 * 179.97438 * 21 20 19
40 40 H 1.08004 * 119.99823 * 359.97308 * 22 17 7
41 41 H 1.09000 * 110.02478 * 359.30420 * 23 3 2
42 42 H 1.09002 * 110.48682 * 335.78843 * 24 23 3
43 43 H 1.09004 * 110.48166 * 98.42921 * 24 23 3
44 44 H 1.09002 * 110.71855 * 279.57643 * 25 24 23
45 45 H 1.08998 * 110.91797 * 156.29713 * 25 24 23
46 46 H 1.08995 * 110.48655 * 203.40082 * 26 25 24
47 47 H 1.08999 * 110.60034 * 80.81460 * 26 25 24
48 48 H 1.08998 * 110.02916 * 238.56874 * 27 23 3
49 49 H 1.08995 * 110.02785 * 359.94600 * 27 23 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 6 2.2429 2.0166 1.1671
5 8 2.6475 3.1600 1.1671
6 6 1.9914 1.3064 2.4722
7 6 2.3223 2.2439 3.6352
8 1 1.7567 3.1695 3.5280
9 6 3.7973 2.5528 3.6272
10 1 4.5047 1.8017 3.3083
11 6 4.2438 3.7946 4.0270
12 7 3.3976 4.6675 4.5285
13 14 6.0506 4.2369 3.8564
14 1 6.7877 3.0900 3.2681
15 1 6.1889 5.4205 2.9703
16 1 6.6115 4.5524 5.1948
17 6 1.9555 1.5789 4.9368
18 6 2.6008 0.4203 5.3269
19 6 2.2670 -0.1877 6.5226
20 6 1.2821 0.3585 7.3243
21 6 0.6331 1.5141 6.9317
22 6 0.9696 2.1241 5.7377
23 6 2.2623 2.0718 -1.2688
24 6 3.7303 2.5405 -1.3415
25 6 3.6553 3.9121 -2.0587
26 6 2.3597 4.5316 -1.4786
27 6 1.3910 3.3372 -1.3563
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5137 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 1.8933 -0.5138 0.8899
32 1 1.8933 -0.5137 -0.8901
33 1 0.9434 1.0125 2.5299
34 1 2.6213 0.4187 2.5301
35 1 3.7116 5.5412 4.8095
36 1 3.3676 -0.0085 4.6988
37 1 2.7738 -1.0908 6.8293
38 1 1.0194 -0.1180 8.2573
39 1 -0.1367 1.9405 7.5578
40 1 0.4626 3.0270 5.4309
41 1 2.0407 1.4075 -2.1040
42 1 4.1440 2.6562 -0.3396
43 1 4.3269 1.8373 -1.9227
44 1 3.5707 3.7792 -3.1373
45 1 4.5211 4.5273 -1.8136
46 1 1.9570 5.2811 -2.1599
47 1 2.5496 4.9705 -0.4992
48 1 0.7472 3.2871 -2.2344
49 1 0.7860 3.4369 -0.4552
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000347579368.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:48
Heat of formation + Delta-G solvation = -38.233675 kcal
Electronic energy + Delta-G solvation = -27729.836213 eV
Core-core repulsion = 24234.403129 eV
Total energy + Delta-G solvation = -3495.433084 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 2.14 seconds
Orbital eigenvalues (eV)
-41.24268 -39.87033 -38.06148 -36.25114 -35.70115 -33.35312 -31.50231 -31.28056
-30.46047 -29.55475 -28.53699 -27.09729 -24.67471 -23.85970 -23.12242 -22.10377
-21.54420 -21.02215 -19.29550 -18.42502 -17.85003 -17.34656 -17.06378 -16.47211
-16.31114 -15.79144 -15.62782 -15.40353 -15.19319 -14.60007 -14.52356 -14.37356
-14.13475 -13.95936 -13.79716 -13.54491 -13.35069 -13.16505 -12.97729 -12.87884
-12.60345 -12.47842 -12.32865 -12.21759 -11.96111 -11.93932 -11.86098 -11.81078
-11.67480 -11.59139 -11.38111 -11.25494 -10.90723 -10.51729 -10.06854 -9.54199
-9.34929 -9.17766 -8.03896 -6.05056 0.77898 0.84781 1.31874 1.36219
1.43032 2.11142 2.30172 2.45135 3.19187 3.36632 3.70406 3.77617
3.96767 4.13526 4.21422 4.26344 4.35664 4.41027 4.45421 4.48755
4.55799 4.60119 4.61889 4.67008 4.69219 4.76071 4.76634 4.83698
4.88940 4.92567 4.97579 5.04399 5.05947 5.08407 5.17752 5.25787
5.34358 5.37498 5.40256 5.45792 5.53711 5.59315 5.65043 5.79096
5.83770 5.95864 6.05489 6.18581 6.43067 6.47288 6.75167 7.02300
7.57166 7.73696 9.05928
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.011313 B = 0.005565 C = 0.004205
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2474.472420 B = 5030.495032 C = 6656.793437
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.101 3.899
3 N -0.620 5.620
4 C 0.508 3.492
5 O -0.534 6.534
6 C -0.112 4.112
7 C 0.086 3.914
8 H 0.021 0.979
9 C -0.475 4.475
10 H 0.043 0.957
11 C 0.026 3.974
12 N -0.916 5.916
13 Si 0.931 3.069
14 H -0.267 1.267
15 H -0.294 1.294
16 H -0.283 1.283
17 C -0.045 4.045
18 C -0.128 4.128
19 C -0.125 4.125
20 C -0.148 4.148
21 C -0.128 4.128
22 C -0.144 4.144
23 C 0.149 3.851
24 C -0.137 4.137
25 C -0.111 4.111
26 C -0.119 4.119
27 C -0.119 4.119
28 H 0.087 0.913
29 H 0.037 0.963
30 H 0.058 0.942
31 H 0.078 0.922
32 H 0.101 0.899
33 H 0.079 0.921
34 H 0.087 0.913
35 H 0.251 0.749
36 H 0.114 0.886
37 H 0.141 0.859
38 H 0.144 0.856
39 H 0.131 0.869
40 H 0.091 0.909
41 H 0.120 0.880
42 H 0.040 0.960
43 H 0.080 0.920
44 H 0.094 0.906
45 H 0.048 0.952
46 H 0.072 0.928
47 H 0.029 0.971
48 H 0.088 0.912
49 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.171 -12.429 -10.177 17.209
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.021 4.021
3 N -0.355 5.355
4 C 0.297 3.703
5 O -0.409 6.409
6 C -0.152 4.152
7 C 0.066 3.934
8 H 0.039 0.961
9 C -0.514 4.514
10 H 0.061 0.939
11 C -0.172 4.172
12 N -0.556 5.556
13 Si 0.759 3.241
14 H -0.191 1.191
15 H -0.221 1.221
16 H -0.209 1.209
17 C -0.046 4.046
18 C -0.146 4.146
19 C -0.143 4.143
20 C -0.166 4.166
21 C -0.146 4.146
22 C -0.162 4.162
23 C 0.046 3.954
24 C -0.175 4.175
25 C -0.149 4.149
26 C -0.157 4.157
27 C -0.158 4.158
28 H 0.105 0.895
29 H 0.056 0.944
30 H 0.077 0.923
31 H 0.096 0.904
32 H 0.119 0.881
33 H 0.097 0.903
34 H 0.105 0.895
35 H 0.060 0.940
36 H 0.132 0.868
37 H 0.159 0.841
38 H 0.162 0.838
39 H 0.149 0.851
40 H 0.109 0.891
41 H 0.138 0.862
42 H 0.059 0.941
43 H 0.098 0.902
44 H 0.112 0.888
45 H 0.067 0.933
46 H 0.091 0.909
47 H 0.048 0.952
48 H 0.107 0.893
49 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -5.953 -11.648 -10.102 16.528
hybrid contribution 1.089 1.222 0.365 1.677
sum -4.864 -10.426 -9.738 15.072
Atomic orbital electron populations
1.22171 0.95463 1.03043 1.01599 1.21762 0.94843 0.81293 1.04228
1.48338 1.67150 1.15085 1.04952 1.20847 0.76891 0.86755 0.85840
1.90726 1.43632 1.19210 1.87313 1.21670 1.01342 0.99418 0.92734
1.17593 0.95709 0.92767 0.87282 0.96087 1.20918 0.91715 0.97317
1.41400 0.93872 1.25412 0.99759 0.96921 0.95113 1.70061 1.35220
1.06699 1.43604 0.85926 0.83030 0.78027 0.77139 1.19113 1.22088
1.20931 1.20593 0.92298 0.93398 0.98264 1.21015 0.99732 0.96114
0.97706 1.21368 0.98055 1.00613 0.94288 1.21259 0.97818 0.96765
1.00737 1.21276 1.00728 0.96627 0.95959 1.21080 0.99098 0.99541
0.96528 1.21768 0.93886 0.93898 0.85825 1.22720 0.97004 0.97492
1.00286 1.22357 0.96843 0.95458 1.00209 1.22209 0.96210 0.97746
0.99529 1.22365 0.97758 0.94684 1.00981 0.89471 0.94422 0.92260
0.90403 0.88076 0.90252 0.89470 0.93962 0.86831 0.84106 0.83829
0.85111 0.89095 0.86211 0.94077 0.90155 0.88789 0.93345 0.90894
0.95182 0.89345 0.94618
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.04 10.24 71.98 0.74 -2.31 16
2 C 0.10 2.09 5.91 86.38 0.51 2.60 16
3 N -0.62 -18.51 2.43 -793.79 -1.93 -20.44 16
4 C 0.51 20.75 6.28 87.66 0.55 21.30 16
5 O -0.53 -27.14 10.98 -3.04 -0.03 -27.17 16
6 C -0.11 -4.46 3.50 29.85 0.10 -4.36 16
7 C 0.09 4.30 1.67 -12.29 -0.02 4.28 16
8 H 0.02 1.25 6.98 -2.39 -0.02 1.23 16
9 C -0.48 -26.55 6.37 25.60 0.16 -26.39 16
10 H 0.04 2.40 7.82 -2.91 -0.02 2.37 16
11 C 0.03 1.56 5.45 84.65 0.46 2.03 16
12 N -0.92 -57.26 12.87 21.45 0.28 -56.98 16
13 Si 0.93 47.86 29.54 68.60 2.03 49.89 16
14 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16
15 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16
16 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16
17 C -0.04 -2.05 4.77 -19.87 -0.09 -2.14 16
18 C -0.13 -5.06 8.86 22.27 0.20 -4.87 16
19 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16
20 C -0.15 -4.67 10.05 22.27 0.22 -4.44 16
21 C -0.13 -4.58 10.05 22.27 0.22 -4.36 16
22 C -0.14 -6.33 9.67 22.27 0.22 -6.12 16
23 C 0.15 3.97 3.35 45.72 0.15 4.13 16
24 C -0.14 -4.11 6.08 31.70 0.19 -3.92 16
25 C -0.11 -3.08 6.91 31.91 0.22 -2.86 16
26 C -0.12 -3.77 6.39 31.67 0.20 -3.57 16
27 C -0.12 -3.44 5.79 31.32 0.18 -3.26 16
28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
29 H 0.04 0.87 7.22 -2.39 -0.02 0.85 16
30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
31 H 0.08 1.65 6.44 -2.39 -0.02 1.63 16
32 H 0.10 1.49 7.93 -2.39 -0.02 1.48 16
33 H 0.08 2.84 7.18 -2.39 -0.02 2.83 16
34 H 0.09 3.19 7.04 -2.39 -0.02 3.17 16
35 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16
36 H 0.11 4.37 7.76 -2.91 -0.02 4.34 16
37 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16
38 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16
39 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16
40 H 0.09 4.26 7.95 -2.91 -0.02 4.24 16
41 H 0.12 2.22 7.82 -2.39 -0.02 2.20 16
42 H 0.04 1.67 6.12 -2.39 -0.01 1.65 16
43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
44 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16
46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
47 H 0.03 1.24 7.30 -2.39 -0.02 1.23 16
48 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16
49 H 0.03 1.27 7.10 -2.39 -0.02 1.25 16
Total: -1.00 -74.04 382.66 5.69 -68.35
By element:
Atomic # 1 Polarization: 23.61 SS G_CDS: 0.91 Total: 24.51 kcal
Atomic # 6 Polarization: -42.61 SS G_CDS: 4.45 Total: -38.16 kcal
Atomic # 7 Polarization: -75.77 SS G_CDS: -1.65 Total: -77.42 kcal
Atomic # 8 Polarization: -27.14 SS G_CDS: -0.03 Total: -27.17 kcal
Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal
Total: -74.04 5.69 -68.35 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000347579368.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.116 kcal
(2) G-P(sol) polarization free energy of solvation -74.043 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.927 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.234 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.14 seconds