Wall clock time and date at job start Tue Mar 31 2020 11:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46594 * 2 1 4 4 C 1.34769 * 120.00176 * 90.00572 * 3 2 1 5 5 O 1.21282 * 120.00127 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.99918 * 359.97438 * 4 3 2 7 7 C 1.53002 * 109.47236 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47304 * 54.99628 * 7 6 4 9 9 C 1.50699 * 109.46997 * 294.99760 * 7 6 4 10 10 H 1.07997 * 120.00390 * 325.84724 * 9 7 6 11 11 C 1.37880 * 120.00168 * 145.84094 * 9 7 6 12 12 N 1.31518 * 119.99852 * 6.12341 * 11 9 7 13 13 Si 1.86795 * 120.00195 * 186.12232 * 11 9 7 14 14 H 1.48494 * 109.47397 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47213 * 119.99923 * 13 11 9 16 16 H 1.48505 * 109.47265 * 239.99893 * 13 11 9 17 17 C 1.50700 * 109.47457 * 175.00095 * 7 6 4 18 18 C 1.38235 * 120.00097 * 63.46573 * 17 7 6 19 19 C 1.38230 * 120.00310 * 179.81427 * 18 17 7 20 20 C 1.38240 * 119.99532 * 0.39708 * 19 18 17 21 21 C 1.38234 * 120.00274 * 359.85711 * 20 19 18 22 22 C 1.38231 * 120.00090 * 243.74642 * 17 7 6 23 23 C 1.46500 * 119.99572 * 269.99878 * 3 2 1 24 24 C 1.54273 * 110.03302 * 237.90906 * 23 3 2 25 25 C 1.54966 * 104.16050 * 217.13953 * 24 23 3 26 26 C 1.54888 * 102.77692 * 37.88977 * 25 24 23 27 27 C 1.53881 * 110.03023 * 120.69635 * 23 3 2 28 28 H 1.09002 * 109.46935 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46854 * 299.99359 * 1 2 3 30 30 H 1.08999 * 109.47729 * 59.99897 * 1 2 3 31 31 H 1.08996 * 109.47228 * 120.00093 * 2 1 3 32 32 H 1.09001 * 109.46854 * 240.00641 * 2 1 3 33 33 H 1.08998 * 109.47412 * 300.00382 * 6 4 3 34 34 H 1.09000 * 109.47327 * 59.99918 * 6 4 3 35 35 H 0.96997 * 120.00185 * 180.02562 * 12 11 9 36 36 H 1.08004 * 120.00092 * 359.97438 * 18 17 7 37 37 H 1.08000 * 120.00423 * 180.22864 * 19 18 17 38 38 H 1.08005 * 119.99537 * 179.83682 * 20 19 18 39 39 H 1.07998 * 119.99956 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.99823 * 359.97308 * 22 17 7 41 41 H 1.09000 * 110.02478 * 359.30420 * 23 3 2 42 42 H 1.09002 * 110.48682 * 335.78843 * 24 23 3 43 43 H 1.09004 * 110.48166 * 98.42921 * 24 23 3 44 44 H 1.09002 * 110.71855 * 279.57643 * 25 24 23 45 45 H 1.08998 * 110.91797 * 156.29713 * 25 24 23 46 46 H 1.08995 * 110.48655 * 203.40082 * 26 25 24 47 47 H 1.08999 * 110.60034 * 80.81460 * 26 25 24 48 48 H 1.08998 * 110.02916 * 238.56874 * 27 23 3 49 49 H 1.08995 * 110.02785 * 359.94600 * 27 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2429 2.0166 1.1671 5 8 2.6475 3.1600 1.1671 6 6 1.9914 1.3064 2.4722 7 6 2.3223 2.2439 3.6352 8 1 1.7567 3.1695 3.5280 9 6 3.7973 2.5528 3.6272 10 1 4.5047 1.8017 3.3083 11 6 4.2438 3.7946 4.0270 12 7 3.3976 4.6675 4.5285 13 14 6.0506 4.2369 3.8564 14 1 6.7877 3.0900 3.2681 15 1 6.1889 5.4205 2.9703 16 1 6.6115 4.5524 5.1948 17 6 1.9555 1.5789 4.9368 18 6 2.6008 0.4203 5.3269 19 6 2.2670 -0.1877 6.5226 20 6 1.2821 0.3585 7.3243 21 6 0.6331 1.5141 6.9317 22 6 0.9696 2.1241 5.7377 23 6 2.2623 2.0718 -1.2688 24 6 3.7303 2.5405 -1.3415 25 6 3.6553 3.9121 -2.0587 26 6 2.3597 4.5316 -1.4786 27 6 1.3910 3.3372 -1.3563 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 0.9434 1.0125 2.5299 34 1 2.6213 0.4187 2.5301 35 1 3.7116 5.5412 4.8095 36 1 3.3676 -0.0085 4.6988 37 1 2.7738 -1.0908 6.8293 38 1 1.0194 -0.1180 8.2573 39 1 -0.1367 1.9405 7.5578 40 1 0.4626 3.0270 5.4309 41 1 2.0407 1.4075 -2.1040 42 1 4.1440 2.6562 -0.3396 43 1 4.3269 1.8373 -1.9227 44 1 3.5707 3.7792 -3.1373 45 1 4.5211 4.5273 -1.8136 46 1 1.9570 5.2811 -2.1599 47 1 2.5496 4.9705 -0.4992 48 1 0.7472 3.2871 -2.2344 49 1 0.7860 3.4369 -0.4552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347579368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:48 Heat of formation + Delta-G solvation = -38.233675 kcal Electronic energy + Delta-G solvation = -27729.836213 eV Core-core repulsion = 24234.403129 eV Total energy + Delta-G solvation = -3495.433084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.24268 -39.87033 -38.06148 -36.25114 -35.70115 -33.35312 -31.50231 -31.28056 -30.46047 -29.55475 -28.53699 -27.09729 -24.67471 -23.85970 -23.12242 -22.10377 -21.54420 -21.02215 -19.29550 -18.42502 -17.85003 -17.34656 -17.06378 -16.47211 -16.31114 -15.79144 -15.62782 -15.40353 -15.19319 -14.60007 -14.52356 -14.37356 -14.13475 -13.95936 -13.79716 -13.54491 -13.35069 -13.16505 -12.97729 -12.87884 -12.60345 -12.47842 -12.32865 -12.21759 -11.96111 -11.93932 -11.86098 -11.81078 -11.67480 -11.59139 -11.38111 -11.25494 -10.90723 -10.51729 -10.06854 -9.54199 -9.34929 -9.17766 -8.03896 -6.05056 0.77898 0.84781 1.31874 1.36219 1.43032 2.11142 2.30172 2.45135 3.19187 3.36632 3.70406 3.77617 3.96767 4.13526 4.21422 4.26344 4.35664 4.41027 4.45421 4.48755 4.55799 4.60119 4.61889 4.67008 4.69219 4.76071 4.76634 4.83698 4.88940 4.92567 4.97579 5.04399 5.05947 5.08407 5.17752 5.25787 5.34358 5.37498 5.40256 5.45792 5.53711 5.59315 5.65043 5.79096 5.83770 5.95864 6.05489 6.18581 6.43067 6.47288 6.75167 7.02300 7.57166 7.73696 9.05928 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.005565 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.472420 B = 5030.495032 C = 6656.793437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.620 5.620 4 C 0.508 3.492 5 O -0.534 6.534 6 C -0.112 4.112 7 C 0.086 3.914 8 H 0.021 0.979 9 C -0.475 4.475 10 H 0.043 0.957 11 C 0.026 3.974 12 N -0.916 5.916 13 Si 0.931 3.069 14 H -0.267 1.267 15 H -0.294 1.294 16 H -0.283 1.283 17 C -0.045 4.045 18 C -0.128 4.128 19 C -0.125 4.125 20 C -0.148 4.148 21 C -0.128 4.128 22 C -0.144 4.144 23 C 0.149 3.851 24 C -0.137 4.137 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.119 4.119 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.251 0.749 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.048 0.952 46 H 0.072 0.928 47 H 0.029 0.971 48 H 0.088 0.912 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 -12.429 -10.177 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.355 5.355 4 C 0.297 3.703 5 O -0.409 6.409 6 C -0.152 4.152 7 C 0.066 3.934 8 H 0.039 0.961 9 C -0.514 4.514 10 H 0.061 0.939 11 C -0.172 4.172 12 N -0.556 5.556 13 Si 0.759 3.241 14 H -0.191 1.191 15 H -0.221 1.221 16 H -0.209 1.209 17 C -0.046 4.046 18 C -0.146 4.146 19 C -0.143 4.143 20 C -0.166 4.166 21 C -0.146 4.146 22 C -0.162 4.162 23 C 0.046 3.954 24 C -0.175 4.175 25 C -0.149 4.149 26 C -0.157 4.157 27 C -0.158 4.158 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.132 0.868 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.109 0.891 41 H 0.138 0.862 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.048 0.952 48 H 0.107 0.893 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.953 -11.648 -10.102 16.528 hybrid contribution 1.089 1.222 0.365 1.677 sum -4.864 -10.426 -9.738 15.072 Atomic orbital electron populations 1.22171 0.95463 1.03043 1.01599 1.21762 0.94843 0.81293 1.04228 1.48338 1.67150 1.15085 1.04952 1.20847 0.76891 0.86755 0.85840 1.90726 1.43632 1.19210 1.87313 1.21670 1.01342 0.99418 0.92734 1.17593 0.95709 0.92767 0.87282 0.96087 1.20918 0.91715 0.97317 1.41400 0.93872 1.25412 0.99759 0.96921 0.95113 1.70061 1.35220 1.06699 1.43604 0.85926 0.83030 0.78027 0.77139 1.19113 1.22088 1.20931 1.20593 0.92298 0.93398 0.98264 1.21015 0.99732 0.96114 0.97706 1.21368 0.98055 1.00613 0.94288 1.21259 0.97818 0.96765 1.00737 1.21276 1.00728 0.96627 0.95959 1.21080 0.99098 0.99541 0.96528 1.21768 0.93886 0.93898 0.85825 1.22720 0.97004 0.97492 1.00286 1.22357 0.96843 0.95458 1.00209 1.22209 0.96210 0.97746 0.99529 1.22365 0.97758 0.94684 1.00981 0.89471 0.94422 0.92260 0.90403 0.88076 0.90252 0.89470 0.93962 0.86831 0.84106 0.83829 0.85111 0.89095 0.86211 0.94077 0.90155 0.88789 0.93345 0.90894 0.95182 0.89345 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.24 71.98 0.74 -2.31 16 2 C 0.10 2.09 5.91 86.38 0.51 2.60 16 3 N -0.62 -18.51 2.43 -793.79 -1.93 -20.44 16 4 C 0.51 20.75 6.28 87.66 0.55 21.30 16 5 O -0.53 -27.14 10.98 -3.04 -0.03 -27.17 16 6 C -0.11 -4.46 3.50 29.85 0.10 -4.36 16 7 C 0.09 4.30 1.67 -12.29 -0.02 4.28 16 8 H 0.02 1.25 6.98 -2.39 -0.02 1.23 16 9 C -0.48 -26.55 6.37 25.60 0.16 -26.39 16 10 H 0.04 2.40 7.82 -2.91 -0.02 2.37 16 11 C 0.03 1.56 5.45 84.65 0.46 2.03 16 12 N -0.92 -57.26 12.87 21.45 0.28 -56.98 16 13 Si 0.93 47.86 29.54 68.60 2.03 49.89 16 14 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 15 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 16 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 17 C -0.04 -2.05 4.77 -19.87 -0.09 -2.14 16 18 C -0.13 -5.06 8.86 22.27 0.20 -4.87 16 19 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 20 C -0.15 -4.67 10.05 22.27 0.22 -4.44 16 21 C -0.13 -4.58 10.05 22.27 0.22 -4.36 16 22 C -0.14 -6.33 9.67 22.27 0.22 -6.12 16 23 C 0.15 3.97 3.35 45.72 0.15 4.13 16 24 C -0.14 -4.11 6.08 31.70 0.19 -3.92 16 25 C -0.11 -3.08 6.91 31.91 0.22 -2.86 16 26 C -0.12 -3.77 6.39 31.67 0.20 -3.57 16 27 C -0.12 -3.44 5.79 31.32 0.18 -3.26 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 0.87 7.22 -2.39 -0.02 0.85 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.65 6.44 -2.39 -0.02 1.63 16 32 H 0.10 1.49 7.93 -2.39 -0.02 1.48 16 33 H 0.08 2.84 7.18 -2.39 -0.02 2.83 16 34 H 0.09 3.19 7.04 -2.39 -0.02 3.17 16 35 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.11 4.37 7.76 -2.91 -0.02 4.34 16 37 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 38 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 40 H 0.09 4.26 7.95 -2.91 -0.02 4.24 16 41 H 0.12 2.22 7.82 -2.39 -0.02 2.20 16 42 H 0.04 1.67 6.12 -2.39 -0.01 1.65 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.03 1.24 7.30 -2.39 -0.02 1.23 16 48 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.03 1.27 7.10 -2.39 -0.02 1.25 16 Total: -1.00 -74.04 382.66 5.69 -68.35 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.91 Total: 24.51 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 4.45 Total: -38.16 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.65 Total: -77.42 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.03 Total: -27.17 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.89 kcal Total: -74.04 5.69 -68.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347579368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.116 kcal (2) G-P(sol) polarization free energy of solvation -74.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds