Wall clock time and date at job start Tue Mar 31 2020 10:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.50186 * 2 1 4 4 C 1.53043 * 109.50202 * 239.93153 * 2 1 3 5 5 C 1.53037 * 109.54016 * 178.65498 * 4 2 1 6 6 H 1.09009 * 109.49499 * 181.31924 * 5 4 2 7 7 C 1.53001 * 109.52238 * 301.39321 * 5 4 2 8 8 C 1.53187 * 109.31516 * 61.36747 * 5 4 2 9 9 N 1.46931 * 108.77217 * 305.36036 * 8 5 4 10 10 C 1.34776 * 120.63083 * 233.58695 * 9 8 5 11 11 O 1.21277 * 120.00317 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99621 * 179.72833 * 10 9 8 13 13 C 1.53004 * 109.46547 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47273 * 305.37390 * 13 12 10 15 15 C 1.50691 * 109.47284 * 65.38221 * 13 12 10 16 16 H 1.08000 * 120.00367 * 34.61511 * 15 13 12 17 17 C 1.37879 * 120.00253 * 214.61923 * 15 13 12 18 18 N 1.31509 * 120.00475 * 186.44651 * 17 15 13 19 19 Si 1.86802 * 119.99463 * 6.44704 * 17 15 13 20 20 H 1.48497 * 109.47271 * 85.01035 * 19 17 15 21 21 H 1.48509 * 109.47087 * 205.01194 * 19 17 15 22 22 H 1.48498 * 109.47286 * 325.00599 * 19 17 15 23 23 C 1.50706 * 109.46382 * 185.38015 * 13 12 10 24 24 C 1.38231 * 120.00231 * 296.35245 * 23 13 12 25 25 C 1.38233 * 120.00459 * 179.79180 * 24 23 13 26 26 C 1.38241 * 119.99543 * 0.44167 * 25 24 23 27 27 C 1.38235 * 119.99955 * 359.81421 * 26 25 24 28 28 C 1.38231 * 119.99791 * 116.63521 * 23 13 12 29 29 C 1.46934 * 118.73579 * 53.86657 * 9 8 5 30 30 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47156 * 300.06879 * 1 2 3 32 32 H 1.09007 * 109.46865 * 60.06850 * 1 2 3 33 33 H 1.08998 * 109.45896 * 58.63004 * 4 2 1 34 34 H 1.09002 * 109.45746 * 298.67439 * 4 2 1 35 35 H 1.09001 * 109.46617 * 179.85763 * 7 5 4 36 36 H 1.08998 * 109.47429 * 299.85836 * 7 5 4 37 37 H 1.09002 * 109.46676 * 59.86035 * 7 5 4 38 38 H 1.09001 * 109.58544 * 185.57871 * 8 5 4 39 39 H 1.08998 * 109.59429 * 65.14690 * 8 5 4 40 40 H 1.09004 * 109.47059 * 299.99705 * 12 10 9 41 41 H 1.08997 * 109.47355 * 60.00181 * 12 10 9 42 42 H 0.97005 * 119.99874 * 179.97438 * 18 17 15 43 43 H 1.08009 * 119.99667 * 0.02562 * 24 23 13 44 44 H 1.07993 * 120.00442 * 180.27600 * 25 24 23 45 45 H 1.07994 * 119.99744 * 179.83000 * 26 25 24 46 46 H 1.08002 * 120.00059 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.00475 * 359.97118 * 28 23 13 48 48 H 1.08993 * 109.58618 * 65.92332 * 29 9 8 49 49 H 1.08993 * 109.58302 * 186.35092 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7228 -1.2485 5 6 3.5709 -0.6941 -1.2664 6 1 3.9335 -1.1886 -2.1677 7 6 4.0552 0.7571 -1.2503 8 6 4.1059 -1.4256 -0.0314 9 7 3.5053 -0.8283 1.1691 10 6 4.2819 -0.3853 2.1776 11 8 5.4885 -0.4782 2.0997 12 6 3.6509 0.2306 3.3998 13 6 4.7458 0.6467 4.3841 14 1 5.3829 -0.2102 4.6026 15 6 5.5758 1.7478 3.7762 16 1 5.1122 2.4816 3.1335 17 6 6.9273 1.8185 4.0403 18 7 7.6274 2.8474 3.6154 19 14 7.7636 0.4525 5.0015 20 1 8.1469 -0.6423 4.0743 21 1 8.9796 0.9873 5.6656 22 1 6.8294 -0.0734 6.0290 23 6 4.1132 1.1404 5.6598 24 6 3.3187 2.2715 5.6446 25 6 2.7349 2.7219 6.8139 26 6 2.9531 2.0463 8.0001 27 6 3.7519 0.9183 8.0162 28 6 4.3322 0.4655 6.8461 29 6 2.0417 -0.7288 1.2519 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8893 32 1 -0.3633 0.5128 -0.8907 33 1 1.6578 -0.2244 -2.1389 34 1 1.6972 -1.7572 -1.2354 35 1 5.1450 0.7765 -1.2605 36 1 3.6743 1.2772 -2.1292 37 1 3.6915 1.2515 -0.3495 38 1 5.1902 -1.3230 0.0128 39 1 3.8386 -2.4808 -0.0873 40 1 3.0730 1.1075 3.1077 41 1 2.9924 -0.4968 3.8745 42 1 8.5781 2.8972 3.8016 43 1 3.1510 2.8012 4.7184 44 1 2.1106 3.6030 6.8012 45 1 2.4992 2.3998 8.9141 46 1 3.9226 0.3907 8.9430 47 1 4.9562 -0.4159 6.8587 48 1 1.6095 -1.7283 1.2984 49 1 1.7636 -0.1663 2.1431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353349440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:02 Heat of formation + Delta-G solvation = -27.462572 kcal Electronic energy + Delta-G solvation = -27524.753161 eV Core-core repulsion = 24029.787148 eV Total energy + Delta-G solvation = -3494.966014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03764 -38.62625 -37.45807 -34.16942 -33.28289 -33.15960 -31.60825 -30.19072 -29.07562 -27.04105 -26.68411 -26.03034 -24.70680 -22.59275 -21.86563 -21.46926 -20.07279 -19.07173 -18.16080 -16.92890 -16.70961 -15.89382 -15.55962 -15.02738 -14.83689 -14.56713 -14.23394 -14.04184 -13.94829 -13.75590 -13.28289 -13.12777 -12.73251 -12.67035 -12.55291 -12.33721 -12.16085 -12.03003 -11.85868 -11.69437 -11.49997 -11.46469 -11.05135 -10.93337 -10.75899 -10.72144 -10.52425 -10.41107 -10.30779 -10.20608 -9.83642 -9.58308 -9.15216 -8.84867 -8.38187 -8.18972 -8.14184 -7.79613 -5.95914 -3.92097 2.11669 2.16735 3.40633 3.45820 3.48249 3.52752 3.55638 4.54334 4.60697 4.63418 4.76070 4.79066 5.02346 5.20751 5.26943 5.39514 5.41432 5.49626 5.52201 5.53623 5.57542 5.63795 5.70860 5.71461 5.75030 5.78274 5.94436 5.97654 6.00031 6.01473 6.03402 6.06538 6.11033 6.20050 6.26054 6.28161 6.33043 6.35129 6.57742 6.61997 6.70945 6.84178 6.97452 7.04883 7.16097 7.29458 7.59931 7.74586 7.84867 7.96303 8.55457 9.00857 9.03995 9.69677 11.17009 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.004983 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.930770 B = 5617.269087 C = 6971.411339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 H 0.081 0.919 4 C -0.106 4.106 5 C -0.106 4.106 6 H 0.074 0.926 7 C -0.145 4.145 8 C 0.117 3.883 9 N -0.626 5.626 10 C 0.518 3.482 11 O -0.501 6.501 12 C -0.116 4.116 13 C 0.056 3.944 14 H 0.048 0.952 15 C -0.485 4.485 16 H 0.070 0.930 17 C 0.086 3.914 18 N -0.899 5.899 19 Si 0.873 3.127 20 H -0.273 1.273 21 H -0.297 1.297 22 H -0.261 1.261 23 C -0.037 4.037 24 C -0.102 4.102 25 C -0.127 4.127 26 C -0.150 4.150 27 C -0.126 4.126 28 C -0.136 4.136 29 C 0.116 3.884 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.261 0.739 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.060 0.940 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.105 -7.261 -4.803 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 H 0.099 0.901 4 C -0.143 4.143 5 C -0.125 4.125 6 H 0.093 0.907 7 C -0.202 4.202 8 C -0.006 4.006 9 N -0.363 5.363 10 C 0.306 3.694 11 O -0.372 6.372 12 C -0.156 4.156 13 C 0.036 3.964 14 H 0.066 0.934 15 C -0.522 4.522 16 H 0.088 0.912 17 C -0.116 4.116 18 N -0.537 5.537 19 Si 0.701 3.299 20 H -0.198 1.198 21 H -0.224 1.224 22 H -0.186 1.186 23 C -0.038 4.038 24 C -0.120 4.120 25 C -0.145 4.145 26 C -0.168 4.168 27 C -0.144 4.144 28 C -0.154 4.154 29 C -0.007 4.007 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.136 0.864 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.129 0.871 48 H 0.079 0.921 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.200 -7.220 -4.830 16.646 hybrid contribution 0.566 -0.520 0.450 0.891 sum -13.634 -7.740 -4.380 16.278 Atomic orbital electron populations 1.21771 0.94836 1.01719 1.01905 1.21665 0.95385 1.00853 0.95253 0.90076 1.21579 0.95058 1.00245 0.97463 1.21485 0.95525 0.97475 0.98027 0.90741 1.21811 1.01447 0.95265 1.01658 1.21481 0.99996 0.95249 0.83841 1.48191 1.06119 1.63330 1.18623 1.20820 0.87295 0.77293 0.83953 1.90724 1.13995 1.53188 1.79334 1.21693 0.99701 0.99854 0.94325 1.18132 0.92555 0.97655 0.88023 0.93355 1.20553 0.92412 1.10506 1.28750 0.91181 1.24872 0.97255 0.94821 0.94697 1.69896 1.07731 1.29145 1.46895 0.86941 0.78894 0.83532 0.80557 1.19842 1.22351 1.18618 1.20744 0.92518 0.93903 0.96651 1.20947 0.97110 0.96136 0.97769 1.21042 1.00748 0.99539 0.93209 1.20853 1.01300 0.97164 0.97475 1.20963 0.98658 0.97284 0.97531 1.21150 1.00758 1.00643 0.92882 1.21769 0.80517 1.00045 0.98402 0.92744 0.92389 0.92613 0.92064 0.92146 0.92505 0.93325 0.91862 0.89038 0.92609 0.89870 0.91542 0.92896 0.86353 0.87229 0.87462 0.87416 0.87064 0.92137 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.20 37.16 0.34 -0.84 16 2 C -0.11 -1.16 2.54 -90.27 -0.23 -1.39 16 3 H 0.08 0.97 6.34 -51.93 -0.33 0.64 16 4 C -0.11 -1.04 4.71 -26.69 -0.13 -1.17 16 5 C -0.11 -1.24 3.21 -90.50 -0.29 -1.53 16 6 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 7 C -0.14 -1.98 8.71 37.16 0.32 -1.66 16 8 C 0.12 1.65 5.82 -3.71 -0.02 1.63 16 9 N -0.63 -9.62 2.41 -172.50 -0.42 -10.04 16 10 C 0.52 10.29 7.45 -10.98 -0.08 10.21 16 11 O -0.50 -12.38 14.41 5.56 0.08 -12.30 16 12 C -0.12 -2.18 3.29 -27.88 -0.09 -2.27 16 13 C 0.06 1.28 1.28 -92.92 -0.12 1.16 16 14 H 0.05 1.19 4.79 -51.93 -0.25 0.94 16 15 C -0.49 -13.37 6.93 -34.44 -0.24 -13.61 16 16 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 17 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 18 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 19 Si 0.87 23.02 27.04 -169.99 -4.60 18.43 16 20 H -0.27 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 22 H -0.26 -6.39 5.15 56.52 0.29 -6.10 16 23 C -0.04 -0.79 4.77 -104.62 -0.50 -1.29 16 24 C -0.10 -1.98 8.87 -39.59 -0.35 -2.33 16 25 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 26 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 27 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 28 C -0.14 -2.70 9.13 -39.58 -0.36 -3.06 16 29 C 0.12 1.36 5.66 -3.48 -0.02 1.34 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.99 5.97 -51.93 -0.31 0.68 16 38 H 0.09 1.54 7.01 -51.93 -0.36 1.17 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.48 7.37 -51.93 -0.38 1.09 16 41 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 42 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 43 H 0.12 2.28 7.77 -52.48 -0.41 1.87 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 45 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.11 2.18 6.96 -52.49 -0.37 1.82 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -33.04 376.36 -9.83 -42.88 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.29 Total: 3.17 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -3.06 Total: -20.35 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.36 Total: -37.49 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.08 Total: -12.30 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.60 Total: 18.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.04 -9.83 -42.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353349440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.413 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds