Wall clock time and date at job start Tue Mar 31 2020 10:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.50186 * 2 1 4 4 C 1.53043 * 109.50202 * 239.93153 * 2 1 3 5 5 C 1.53037 * 109.54016 * 178.65498 * 4 2 1 6 6 H 1.09009 * 109.49499 * 181.31924 * 5 4 2 7 7 C 1.53001 * 109.52238 * 301.39321 * 5 4 2 8 8 C 1.53187 * 109.31516 * 61.36747 * 5 4 2 9 9 N 1.46931 * 108.77217 * 305.36036 * 8 5 4 10 10 C 1.34776 * 120.63083 * 233.58695 * 9 8 5 11 11 O 1.21277 * 120.00317 * 359.97438 * 10 9 8 12 12 C 1.50707 * 119.99621 * 179.72833 * 10 9 8 13 13 C 1.53004 * 109.46547 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.47273 * 305.37390 * 13 12 10 15 15 C 1.50691 * 109.47284 * 65.38221 * 13 12 10 16 16 H 1.08000 * 120.00367 * 34.61511 * 15 13 12 17 17 C 1.37879 * 120.00253 * 214.61923 * 15 13 12 18 18 N 1.31509 * 120.00475 * 186.44651 * 17 15 13 19 19 Si 1.86802 * 119.99463 * 6.44704 * 17 15 13 20 20 H 1.48497 * 109.47271 * 85.01035 * 19 17 15 21 21 H 1.48509 * 109.47087 * 205.01194 * 19 17 15 22 22 H 1.48498 * 109.47286 * 325.00599 * 19 17 15 23 23 C 1.50706 * 109.46382 * 185.38015 * 13 12 10 24 24 C 1.38231 * 120.00231 * 296.35245 * 23 13 12 25 25 C 1.38233 * 120.00459 * 179.79180 * 24 23 13 26 26 C 1.38241 * 119.99543 * 0.44167 * 25 24 23 27 27 C 1.38235 * 119.99955 * 359.81421 * 26 25 24 28 28 C 1.38231 * 119.99791 * 116.63521 * 23 13 12 29 29 C 1.46934 * 118.73579 * 53.86657 * 9 8 5 30 30 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47156 * 300.06879 * 1 2 3 32 32 H 1.09007 * 109.46865 * 60.06850 * 1 2 3 33 33 H 1.08998 * 109.45896 * 58.63004 * 4 2 1 34 34 H 1.09002 * 109.45746 * 298.67439 * 4 2 1 35 35 H 1.09001 * 109.46617 * 179.85763 * 7 5 4 36 36 H 1.08998 * 109.47429 * 299.85836 * 7 5 4 37 37 H 1.09002 * 109.46676 * 59.86035 * 7 5 4 38 38 H 1.09001 * 109.58544 * 185.57871 * 8 5 4 39 39 H 1.08998 * 109.59429 * 65.14690 * 8 5 4 40 40 H 1.09004 * 109.47059 * 299.99705 * 12 10 9 41 41 H 1.08997 * 109.47355 * 60.00181 * 12 10 9 42 42 H 0.97005 * 119.99874 * 179.97438 * 18 17 15 43 43 H 1.08009 * 119.99667 * 0.02562 * 24 23 13 44 44 H 1.07993 * 120.00442 * 180.27600 * 25 24 23 45 45 H 1.07994 * 119.99744 * 179.83000 * 26 25 24 46 46 H 1.08002 * 120.00059 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.00475 * 359.97118 * 28 23 13 48 48 H 1.08993 * 109.58618 * 65.92332 * 29 9 8 49 49 H 1.08993 * 109.58302 * 186.35092 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7228 -1.2485 5 6 3.5709 -0.6941 -1.2664 6 1 3.9335 -1.1886 -2.1677 7 6 4.0552 0.7571 -1.2503 8 6 4.1059 -1.4256 -0.0314 9 7 3.5053 -0.8283 1.1691 10 6 4.2819 -0.3853 2.1776 11 8 5.4885 -0.4782 2.0997 12 6 3.6509 0.2306 3.3998 13 6 4.7458 0.6467 4.3841 14 1 5.3829 -0.2102 4.6026 15 6 5.5758 1.7478 3.7762 16 1 5.1122 2.4816 3.1335 17 6 6.9273 1.8185 4.0403 18 7 7.6274 2.8474 3.6154 19 14 7.7636 0.4525 5.0015 20 1 8.1469 -0.6423 4.0743 21 1 8.9796 0.9873 5.6656 22 1 6.8294 -0.0734 6.0290 23 6 4.1132 1.1404 5.6598 24 6 3.3187 2.2715 5.6446 25 6 2.7349 2.7219 6.8139 26 6 2.9531 2.0463 8.0001 27 6 3.7519 0.9183 8.0162 28 6 4.3322 0.4655 6.8461 29 6 2.0417 -0.7288 1.2519 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8893 32 1 -0.3633 0.5128 -0.8907 33 1 1.6578 -0.2244 -2.1389 34 1 1.6972 -1.7572 -1.2354 35 1 5.1450 0.7765 -1.2605 36 1 3.6743 1.2772 -2.1292 37 1 3.6915 1.2515 -0.3495 38 1 5.1902 -1.3230 0.0128 39 1 3.8386 -2.4808 -0.0873 40 1 3.0730 1.1075 3.1077 41 1 2.9924 -0.4968 3.8745 42 1 8.5781 2.8972 3.8016 43 1 3.1510 2.8012 4.7184 44 1 2.1106 3.6030 6.8012 45 1 2.4992 2.3998 8.9141 46 1 3.9226 0.3907 8.9430 47 1 4.9562 -0.4159 6.8587 48 1 1.6095 -1.7283 1.2984 49 1 1.7636 -0.1663 2.1431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353349440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:02 Heat of formation + Delta-G solvation = -45.652706 kcal Electronic energy + Delta-G solvation = -27525.541944 eV Core-core repulsion = 24029.787148 eV Total energy + Delta-G solvation = -3495.754797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33949 -40.05140 -38.81233 -35.90370 -34.56435 -34.17893 -33.63566 -31.60513 -30.52565 -28.48305 -27.54950 -27.45062 -26.07450 -24.21964 -23.28859 -22.45568 -21.48282 -20.45754 -19.35069 -19.03190 -18.16721 -17.26609 -16.88201 -16.53761 -16.10531 -15.86661 -15.72705 -15.45579 -15.14368 -14.94609 -14.80671 -14.44400 -14.40887 -14.12754 -13.87554 -13.69824 -13.53805 -13.32101 -12.99181 -12.90869 -12.81836 -12.74322 -12.57430 -12.43962 -12.05742 -11.94789 -11.91115 -11.80176 -11.69293 -11.46737 -11.36438 -11.17213 -11.05538 -10.62909 -10.42812 -9.61759 -9.42303 -9.30141 -8.23856 -6.19215 0.68701 0.73547 1.28110 1.36777 1.39075 1.90663 2.21228 2.39790 3.07537 3.23730 3.66434 3.82001 3.92863 4.01365 4.05035 4.12089 4.24132 4.29521 4.31414 4.42669 4.45085 4.48146 4.55614 4.61297 4.66509 4.72483 4.76510 4.83212 4.85533 4.85990 4.90578 4.93919 5.05229 5.09256 5.13906 5.17452 5.19092 5.29483 5.35029 5.37599 5.40205 5.45472 5.58373 5.67120 5.77102 5.78798 5.83282 6.02650 6.32403 6.35972 6.59827 6.78928 7.44150 7.50889 8.93266 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.004983 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.930770 B = 5617.269087 C = 6971.411339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 H 0.058 0.942 4 C -0.100 4.100 5 C -0.099 4.099 6 H 0.096 0.904 7 C -0.142 4.142 8 C 0.112 3.888 9 N -0.617 5.617 10 C 0.510 3.490 11 O -0.565 6.565 12 C -0.108 4.108 13 C 0.057 3.943 14 H 0.030 0.970 15 C -0.461 4.461 16 H 0.032 0.968 17 C 0.024 3.976 18 N -0.953 5.953 19 Si 0.922 3.078 20 H -0.289 1.289 21 H -0.297 1.297 22 H -0.231 1.231 23 C -0.062 4.062 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.139 4.139 27 C -0.123 4.123 28 C -0.153 4.153 29 C 0.108 3.892 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.026 0.974 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.258 0.742 43 H 0.107 0.893 44 H 0.140 0.860 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.047 -8.790 -3.468 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.076 0.924 4 C -0.137 4.137 5 C -0.118 4.118 6 H 0.114 0.886 7 C -0.199 4.199 8 C -0.011 4.011 9 N -0.351 5.351 10 C 0.299 3.701 11 O -0.442 6.442 12 C -0.148 4.148 13 C 0.038 3.962 14 H 0.048 0.952 15 C -0.499 4.499 16 H 0.050 0.950 17 C -0.172 4.172 18 N -0.595 5.595 19 Si 0.749 3.251 20 H -0.216 1.216 21 H -0.224 1.224 22 H -0.154 1.154 23 C -0.063 4.063 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.157 4.157 27 C -0.141 4.141 28 C -0.171 4.171 29 C -0.014 4.014 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.067 0.933 43 H 0.125 0.875 44 H 0.157 0.843 45 H 0.165 0.835 46 H 0.158 0.842 47 H 0.125 0.875 48 H 0.106 0.894 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.233 -8.773 -3.500 20.534 hybrid contribution 1.611 -0.019 0.004 1.612 sum -16.621 -8.792 -3.496 19.126 Atomic orbital electron populations 1.21717 0.92526 1.02884 1.02418 1.21627 0.97156 0.99383 0.94765 0.92376 1.21570 0.92787 1.01618 0.97723 1.21480 0.97399 0.95438 0.97505 0.88587 1.21782 0.99522 0.97272 1.01352 1.21627 0.98031 0.97057 0.84349 1.48198 1.07686 1.61528 1.17701 1.21058 0.86813 0.77097 0.85134 1.90698 1.16573 1.56185 1.80745 1.21579 0.98797 1.00952 0.93426 1.18004 0.93117 0.95112 0.89979 0.95167 1.20749 0.92501 1.09983 1.26630 0.95006 1.25584 0.98344 0.96722 0.96559 1.70034 1.07776 1.31490 1.50156 0.86141 0.78420 0.80670 0.79886 1.21598 1.22391 1.15398 1.20469 0.94590 0.95361 0.95874 1.20980 0.97983 0.95976 0.98756 1.21388 1.00076 1.00244 0.92463 1.21337 0.99844 0.95995 0.98532 1.21333 0.97600 0.97516 0.97671 1.21245 1.01548 1.00935 0.93417 1.22122 0.77829 1.01938 0.99503 0.91182 0.92290 0.91819 0.90484 0.90054 0.95450 0.91180 0.94425 0.92821 0.89897 0.89163 0.88119 0.93340 0.87471 0.84261 0.83497 0.84206 0.87452 0.89353 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.20 71.98 0.66 -1.11 16 2 C -0.11 -2.03 2.54 -10.57 -0.03 -2.05 16 3 H 0.06 1.36 6.34 -2.39 -0.02 1.34 16 4 C -0.10 -1.64 4.71 30.62 0.14 -1.50 16 5 C -0.10 -2.22 3.21 -10.72 -0.03 -2.25 16 6 H 0.10 1.78 8.14 -2.38 -0.02 1.77 16 7 C -0.14 -4.04 8.71 71.98 0.63 -3.41 16 8 C 0.11 3.16 5.82 86.36 0.50 3.66 16 9 N -0.62 -18.99 2.41 -818.05 -1.97 -20.96 16 10 C 0.51 21.08 7.45 87.66 0.65 21.74 16 11 O -0.56 -29.87 14.41 -3.02 -0.04 -29.91 16 12 C -0.11 -4.12 3.29 29.85 0.10 -4.02 16 13 C 0.06 2.70 1.28 -12.29 -0.02 2.68 16 14 H 0.03 1.53 4.79 -2.39 -0.01 1.51 16 15 C -0.46 -26.87 6.93 25.60 0.18 -26.69 16 16 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 17 C 0.02 1.49 5.47 84.66 0.46 1.96 16 18 N -0.95 -63.62 13.96 21.45 0.30 -63.32 16 19 Si 0.92 49.66 27.04 68.60 1.85 51.51 16 20 H -0.29 -16.20 7.11 99.48 0.71 -15.50 16 21 H -0.30 -15.79 7.11 99.48 0.71 -15.08 16 22 H -0.23 -11.12 5.15 99.48 0.51 -10.61 16 23 C -0.06 -2.61 4.77 -19.87 -0.09 -2.70 16 24 C -0.12 -4.54 8.87 22.27 0.20 -4.35 16 25 C -0.12 -3.84 10.05 22.27 0.22 -3.61 16 26 C -0.14 -3.91 10.05 22.27 0.22 -3.68 16 27 C -0.12 -3.79 10.05 22.27 0.22 -3.56 16 28 C -0.15 -5.80 9.13 22.27 0.20 -5.60 16 29 C 0.11 2.31 5.66 86.51 0.49 2.80 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.04 1.24 5.97 -2.39 -0.01 1.23 16 38 H 0.05 1.93 7.01 -2.39 -0.02 1.92 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.09 3.29 7.37 -2.39 -0.02 3.27 16 41 H 0.10 3.13 7.92 -2.39 -0.02 3.11 16 42 H 0.26 16.44 8.31 -92.70 -0.77 15.67 16 43 H 0.11 4.23 7.77 -2.91 -0.02 4.20 16 44 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 45 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 46 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 47 H 0.11 4.06 6.96 -2.91 -0.02 4.04 16 48 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 49 H 0.09 1.84 5.93 -2.39 -0.01 1.83 16 Total: -1.00 -79.34 376.36 5.58 -73.77 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.72 Total: 20.63 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 4.72 Total: -31.71 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -1.67 Total: -84.28 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.04 Total: -29.91 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 1.85 Total: 51.51 kcal Total: -79.34 5.58 -73.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353349440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.114 kcal (2) G-P(sol) polarization free energy of solvation -79.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds