Wall clock time and date at job start Tue Mar 31 2020 11:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99954 * 2 1 4 4 O 1.21282 * 119.99457 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00031 * 0.02562 * 3 2 1 6 6 C 1.52996 * 109.46946 * 179.97438 * 5 3 2 7 7 H 1.09006 * 109.47310 * 54.05794 * 6 5 3 8 8 C 1.50697 * 109.47304 * 294.05846 * 6 5 3 9 9 H 1.07992 * 120.00301 * 330.08145 * 8 6 5 10 10 C 1.37884 * 119.99665 * 150.08412 * 8 6 5 11 11 N 1.31507 * 120.00288 * 6.55154 * 10 8 6 12 12 Si 1.86800 * 119.99611 * 186.55495 * 10 8 6 13 13 H 1.48497 * 109.47338 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47308 * 300.00090 * 12 10 8 15 15 H 1.48498 * 109.47499 * 59.99877 * 12 10 8 16 16 C 1.50697 * 109.47089 * 174.05389 * 6 5 3 17 17 C 1.38240 * 119.99611 * 64.30648 * 16 6 5 18 18 C 1.38241 * 119.99879 * 179.78679 * 17 16 6 19 19 C 1.38230 * 119.99776 * 0.43986 * 18 17 16 20 20 C 1.38232 * 120.00367 * 359.81519 * 19 18 17 21 21 C 1.38236 * 120.00488 * 244.57674 * 16 6 5 22 22 C 1.46497 * 119.99819 * 180.02562 * 2 1 3 23 23 C 1.52995 * 109.47234 * 60.00073 * 22 2 1 24 24 C 1.53000 * 109.47412 * 179.97438 * 23 22 2 25 25 C 1.53002 * 109.46896 * 59.99874 * 24 23 22 26 26 C 1.52995 * 109.47193 * 300.00260 * 25 24 23 27 27 C 1.52995 * 109.47481 * 299.99790 * 22 2 1 28 28 H 1.08999 * 109.47583 * 89.99570 * 1 2 3 29 29 H 1.09003 * 109.46967 * 210.00130 * 1 2 3 30 30 H 1.09004 * 109.47221 * 329.99450 * 1 2 3 31 31 H 1.08998 * 109.46657 * 60.00163 * 5 3 2 32 32 H 1.08993 * 109.46895 * 300.00034 * 5 3 2 33 33 H 0.96996 * 120.00292 * 354.73132 * 11 10 8 34 34 H 1.07999 * 120.00112 * 0.02562 * 17 16 6 35 35 H 1.07997 * 119.99856 * 180.28017 * 18 17 16 36 36 H 1.07998 * 120.00184 * 179.83001 * 19 18 17 37 37 H 1.08001 * 120.00306 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99627 * 359.97438 * 21 16 6 39 39 H 1.09003 * 109.47361 * 179.97438 * 22 2 1 40 40 H 1.08998 * 109.47481 * 299.99830 * 23 22 2 41 41 H 1.09004 * 109.47179 * 60.00006 * 23 22 2 42 42 H 1.09003 * 109.47507 * 300.00105 * 24 23 22 43 43 H 1.09001 * 109.47220 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.47408 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.47115 * 60.00292 * 25 24 23 46 46 H 1.09003 * 109.46870 * 299.99561 * 26 25 24 47 47 H 1.08997 * 109.47074 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.47411 * 300.00493 * 27 22 2 49 49 H 1.09005 * 109.46929 * 60.00227 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 1 3.0742 3.5197 -0.8310 8 6 3.1463 3.6400 1.2985 9 1 2.6844 3.2659 2.2001 10 6 4.4376 4.1222 1.3343 11 7 4.9553 4.6953 0.2699 12 14 5.4516 3.9612 2.8948 13 1 6.7953 4.5541 2.6754 14 1 4.7706 4.6766 4.0037 15 1 5.5949 2.5255 3.2462 16 6 1.6320 4.9354 -0.1455 17 6 0.7553 5.3437 0.8423 18 6 0.0727 6.5385 0.7100 19 6 0.2600 7.3205 -0.4144 20 6 1.1326 6.9097 -1.4046 21 6 1.8185 5.7170 -1.2703 22 6 2.1974 -1.2687 -0.0006 23 6 1.8278 -2.0704 -1.2501 24 6 2.5932 -3.3952 -1.2511 25 6 2.2242 -4.1983 -0.0022 26 6 2.5938 -3.3966 1.2474 27 6 1.8279 -2.0716 1.2483 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 0.7591 2.5298 0.8908 32 1 0.7584 2.5302 -0.8891 33 1 4.4580 4.7110 -0.5628 34 1 0.6066 4.7311 1.7192 35 1 -0.6087 6.8597 1.4838 36 1 -0.2753 8.2527 -0.5191 37 1 1.2786 7.5205 -2.2833 38 1 2.5004 5.3961 -2.0438 39 1 3.2691 -1.0696 -0.0009 40 1 0.7562 -2.2696 -1.2503 41 1 2.0912 -1.4985 -2.1399 42 1 3.6649 -3.1958 -1.2512 43 1 2.3296 -3.9666 -2.1411 44 1 2.7691 -5.1424 -0.0030 45 1 1.1525 -4.3979 -0.0021 46 1 3.6654 -3.1971 1.2473 47 1 2.3312 -3.9689 2.1371 48 1 2.0912 -1.5004 2.1386 49 1 0.7562 -2.2708 1.2482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353825895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:42 Heat of formation + Delta-G solvation = -36.103620 kcal Electronic energy + Delta-G solvation = -27028.901417 eV Core-core repulsion = 23533.560699 eV Total energy + Delta-G solvation = -3495.340717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -39.84141 -38.55985 -37.65548 -34.70262 -34.18474 -31.37970 -30.80908 -30.13386 -30.05942 -28.48842 -26.52090 -25.04120 -23.10290 -22.64761 -22.04610 -21.60871 -20.05328 -19.57367 -18.52425 -16.81007 -16.51891 -16.08557 -15.74495 -15.10176 -14.79074 -14.36992 -14.18100 -14.10837 -13.99832 -13.64173 -13.25926 -13.11029 -12.74033 -12.61539 -12.42041 -12.33231 -12.21634 -12.20584 -12.11123 -11.79656 -11.43481 -11.18574 -11.13236 -10.93556 -10.69833 -10.68620 -10.41636 -10.32288 -10.25236 -10.09835 -10.02416 -9.61163 -8.93013 -8.60523 -8.25672 -8.17144 -8.13063 -7.61908 -6.21024 -3.88278 2.19914 2.25960 3.41612 3.46622 3.51222 3.57079 3.72118 4.62020 4.63122 4.68329 4.73254 4.84842 5.05667 5.18855 5.23197 5.38371 5.41800 5.44600 5.46792 5.58176 5.59832 5.61356 5.62505 5.64562 5.69781 5.77360 5.80701 5.95008 5.98407 6.02379 6.05866 6.10698 6.11486 6.16517 6.18760 6.32543 6.35329 6.42407 6.43820 6.69320 6.79523 6.92863 7.02353 7.21844 7.23605 7.39704 7.73785 7.86736 7.93766 8.25100 8.52973 8.98824 9.02946 9.80838 11.19333 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.004096 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.673923 B = 6834.274991 C = 8104.075831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.630 5.630 3 C 0.516 3.484 4 O -0.499 6.499 5 C -0.114 4.114 6 C 0.071 3.929 7 H 0.050 0.950 8 C -0.566 4.566 9 H 0.044 0.956 10 C 0.032 3.968 11 N -0.906 5.906 12 Si 1.062 2.938 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.289 1.289 16 C -0.029 4.029 17 C -0.108 4.108 18 C -0.129 4.129 19 C -0.153 4.153 20 C -0.124 4.124 21 C -0.130 4.130 22 C 0.141 3.859 23 C -0.125 4.125 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.127 4.127 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.269 0.731 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.487 -12.031 -1.887 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.304 3.696 4 O -0.370 6.370 5 C -0.154 4.154 6 C 0.052 3.948 7 H 0.068 0.932 8 C -0.604 4.604 9 H 0.062 0.938 10 C -0.173 4.173 11 N -0.541 5.541 12 Si 0.891 3.109 13 H -0.209 1.209 14 H -0.218 1.218 15 H -0.215 1.215 16 C -0.030 4.030 17 C -0.126 4.126 18 C -0.148 4.148 19 C -0.172 4.172 20 C -0.142 4.142 21 C -0.148 4.148 22 C 0.037 3.963 23 C -0.163 4.163 24 C -0.155 4.155 25 C -0.156 4.156 26 C -0.155 4.155 27 C -0.165 4.165 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.324 -11.589 -1.208 14.924 hybrid contribution -1.639 -0.312 -0.570 1.763 sum -10.964 -11.901 -1.778 16.279 Atomic orbital electron populations 1.21635 0.80814 1.02633 1.01034 1.48072 1.06233 1.05765 1.76542 1.20903 0.88497 0.84803 0.75373 1.90728 1.13737 1.86455 1.46125 1.21696 0.99168 0.93350 1.01180 1.17879 0.91573 0.85175 1.00142 0.93159 1.21507 0.99784 1.45828 0.93256 0.93763 1.25565 0.95701 0.92689 1.03355 1.70753 1.42451 1.38917 1.02002 0.83656 0.76379 0.76205 0.74649 1.20947 1.21779 1.21527 1.20827 0.92035 0.98849 0.91304 1.20914 0.96860 0.96173 0.98702 1.21007 1.00590 0.95609 0.97546 1.20815 1.01015 0.99809 0.95516 1.20965 0.97769 0.96789 0.98726 1.21069 1.00076 0.95427 0.98268 1.20934 0.98701 0.82907 0.93715 1.21861 1.00189 0.95946 0.98331 1.21505 1.00661 0.95687 0.97684 1.21547 1.01094 0.98181 0.94796 1.21506 1.00703 0.95664 0.97651 1.21883 1.00141 0.96005 0.98497 0.93423 0.91780 0.91078 0.90368 0.91814 0.91894 0.86794 0.87470 0.87600 0.87476 0.87199 0.88270 0.92040 0.91798 0.91692 0.92005 0.92147 0.92174 0.91659 0.91964 0.91527 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 9.30 59.85 0.56 1.52 16 2 N -0.63 -9.92 2.76 -173.94 -0.48 -10.40 16 3 C 0.52 10.60 7.43 -10.98 -0.08 10.52 16 4 O -0.50 -12.71 14.34 5.56 0.08 -12.63 16 5 C -0.11 -2.25 3.49 -27.89 -0.10 -2.35 16 6 C 0.07 1.73 1.31 -92.93 -0.12 1.61 16 7 H 0.05 1.38 6.23 -51.93 -0.32 1.05 16 8 C -0.57 -15.54 6.40 -34.44 -0.22 -15.76 16 9 H 0.04 1.22 7.82 -52.49 -0.41 0.81 16 10 C 0.03 0.94 5.45 -17.82 -0.10 0.85 16 11 N -0.91 -27.90 13.63 55.43 0.76 -27.14 16 12 Si 1.06 26.57 29.91 -169.99 -5.08 21.49 16 13 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 C -0.03 -0.66 4.77 -104.62 -0.50 -1.16 16 17 C -0.11 -2.23 8.88 -39.58 -0.35 -2.58 16 18 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 19 C -0.15 -2.68 10.05 -39.59 -0.40 -3.08 16 20 C -0.12 -2.30 10.05 -39.58 -0.40 -2.70 16 21 C -0.13 -2.75 9.67 -39.58 -0.38 -3.13 16 22 C 0.14 2.02 2.52 -67.94 -0.17 1.85 16 23 C -0.12 -1.46 5.20 -26.73 -0.14 -1.60 16 24 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 25 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 26 C -0.12 -1.20 5.92 -26.71 -0.16 -1.36 16 27 C -0.13 -1.53 5.19 -26.71 -0.14 -1.67 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 30 H 0.07 0.82 6.44 -51.93 -0.33 0.48 16 31 H 0.08 1.45 7.13 -51.93 -0.37 1.08 16 32 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.27 8.22 6.68 -40.82 -0.27 7.95 16 34 H 0.11 2.28 7.80 -52.49 -0.41 1.87 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16 39 H 0.10 1.74 6.90 -51.93 -0.36 1.39 16 40 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.06 0.66 6.66 -51.93 -0.35 0.31 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -32.95 382.76 -10.64 -43.59 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -8.26 Total: 3.66 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -3.41 Total: -24.34 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.27 Total: -37.54 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -5.08 Total: 21.49 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.95 -10.64 -43.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353825895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.483 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds