Wall clock time and date at job start Tue Mar 31 2020 11:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99954 * 2 1 4 4 O 1.21282 * 119.99457 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.00031 * 0.02562 * 3 2 1 6 6 C 1.52996 * 109.46946 * 179.97438 * 5 3 2 7 7 H 1.09006 * 109.47310 * 54.05794 * 6 5 3 8 8 C 1.50697 * 109.47304 * 294.05846 * 6 5 3 9 9 H 1.07992 * 120.00301 * 330.08145 * 8 6 5 10 10 C 1.37884 * 119.99665 * 150.08412 * 8 6 5 11 11 N 1.31507 * 120.00288 * 6.55154 * 10 8 6 12 12 Si 1.86800 * 119.99611 * 186.55495 * 10 8 6 13 13 H 1.48497 * 109.47338 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47308 * 300.00090 * 12 10 8 15 15 H 1.48498 * 109.47499 * 59.99877 * 12 10 8 16 16 C 1.50697 * 109.47089 * 174.05389 * 6 5 3 17 17 C 1.38240 * 119.99611 * 64.30648 * 16 6 5 18 18 C 1.38241 * 119.99879 * 179.78679 * 17 16 6 19 19 C 1.38230 * 119.99776 * 0.43986 * 18 17 16 20 20 C 1.38232 * 120.00367 * 359.81519 * 19 18 17 21 21 C 1.38236 * 120.00488 * 244.57674 * 16 6 5 22 22 C 1.46497 * 119.99819 * 180.02562 * 2 1 3 23 23 C 1.52995 * 109.47234 * 60.00073 * 22 2 1 24 24 C 1.53000 * 109.47412 * 179.97438 * 23 22 2 25 25 C 1.53002 * 109.46896 * 59.99874 * 24 23 22 26 26 C 1.52995 * 109.47193 * 300.00260 * 25 24 23 27 27 C 1.52995 * 109.47481 * 299.99790 * 22 2 1 28 28 H 1.08999 * 109.47583 * 89.99570 * 1 2 3 29 29 H 1.09003 * 109.46967 * 210.00130 * 1 2 3 30 30 H 1.09004 * 109.47221 * 329.99450 * 1 2 3 31 31 H 1.08998 * 109.46657 * 60.00163 * 5 3 2 32 32 H 1.08993 * 109.46895 * 300.00034 * 5 3 2 33 33 H 0.96996 * 120.00292 * 354.73132 * 11 10 8 34 34 H 1.07999 * 120.00112 * 0.02562 * 17 16 6 35 35 H 1.07997 * 119.99856 * 180.28017 * 18 17 16 36 36 H 1.07998 * 120.00184 * 179.83001 * 19 18 17 37 37 H 1.08001 * 120.00306 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99627 * 359.97438 * 21 16 6 39 39 H 1.09003 * 109.47361 * 179.97438 * 22 2 1 40 40 H 1.08998 * 109.47481 * 299.99830 * 23 22 2 41 41 H 1.09004 * 109.47179 * 60.00006 * 23 22 2 42 42 H 1.09003 * 109.47507 * 300.00105 * 24 23 22 43 43 H 1.09001 * 109.47220 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.47408 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.47115 * 60.00292 * 25 24 23 46 46 H 1.09003 * 109.46870 * 299.99561 * 26 25 24 47 47 H 1.08997 * 109.47074 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.47411 * 300.00493 * 27 22 2 49 49 H 1.09005 * 109.46929 * 60.00227 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 1 3.0742 3.5197 -0.8310 8 6 3.1463 3.6400 1.2985 9 1 2.6844 3.2659 2.2001 10 6 4.4376 4.1222 1.3343 11 7 4.9553 4.6953 0.2699 12 14 5.4516 3.9612 2.8948 13 1 6.7953 4.5541 2.6754 14 1 4.7706 4.6766 4.0037 15 1 5.5949 2.5255 3.2462 16 6 1.6320 4.9354 -0.1455 17 6 0.7553 5.3437 0.8423 18 6 0.0727 6.5385 0.7100 19 6 0.2600 7.3205 -0.4144 20 6 1.1326 6.9097 -1.4046 21 6 1.8185 5.7170 -1.2703 22 6 2.1974 -1.2687 -0.0006 23 6 1.8278 -2.0704 -1.2501 24 6 2.5932 -3.3952 -1.2511 25 6 2.2242 -4.1983 -0.0022 26 6 2.5938 -3.3966 1.2474 27 6 1.8279 -2.0716 1.2483 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 0.7591 2.5298 0.8908 32 1 0.7584 2.5302 -0.8891 33 1 4.4580 4.7110 -0.5628 34 1 0.6066 4.7311 1.7192 35 1 -0.6087 6.8597 1.4838 36 1 -0.2753 8.2527 -0.5191 37 1 1.2786 7.5205 -2.2833 38 1 2.5004 5.3961 -2.0438 39 1 3.2691 -1.0696 -0.0009 40 1 0.7562 -2.2696 -1.2503 41 1 2.0912 -1.4985 -2.1399 42 1 3.6649 -3.1958 -1.2512 43 1 2.3296 -3.9666 -2.1411 44 1 2.7691 -5.1424 -0.0030 45 1 1.1525 -4.3979 -0.0021 46 1 3.6654 -3.1971 1.2473 47 1 2.3312 -3.9689 2.1371 48 1 2.0912 -1.5004 2.1386 49 1 0.7562 -2.2708 1.2482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353825895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:41 Heat of formation + Delta-G solvation = -53.329317 kcal Electronic energy + Delta-G solvation = -27029.648379 eV Core-core repulsion = 23533.560699 eV Total energy + Delta-G solvation = -3496.087680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23670 -40.04839 -38.94407 -36.18581 -35.86208 -33.32369 -31.71645 -31.62401 -31.30867 -29.90220 -27.69572 -26.91579 -24.85537 -23.56039 -23.33214 -23.02189 -21.63890 -20.61802 -19.99200 -18.72995 -18.07179 -17.34126 -17.17927 -16.61884 -16.01590 -15.73107 -15.68213 -15.62614 -15.12054 -14.95338 -14.79772 -14.49691 -14.08376 -14.04275 -13.92053 -13.78215 -13.42602 -13.33598 -13.19405 -13.11382 -13.07759 -12.72284 -12.61572 -12.11020 -12.08936 -12.07524 -11.96119 -11.74038 -11.54641 -11.46241 -11.28093 -11.19208 -10.69764 -10.59644 -10.30363 -9.65200 -9.49591 -9.28084 -8.46985 -6.12275 0.66686 0.73085 1.44518 1.56107 1.71017 1.85610 2.13259 2.58844 3.09492 3.36395 3.64241 3.81238 3.92907 3.99512 4.11481 4.20146 4.26371 4.28278 4.28412 4.30832 4.40282 4.44864 4.48882 4.51697 4.55783 4.58997 4.67248 4.71477 4.79008 4.83495 4.86346 4.92039 5.06277 5.08307 5.15445 5.18166 5.18895 5.21992 5.31252 5.39124 5.39476 5.41271 5.50523 5.73544 5.77690 5.81856 5.92992 6.22726 6.28954 6.37469 6.53155 6.76295 7.46120 7.63299 8.93238 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.004096 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.673923 B = 6834.274991 C = 8104.075831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.620 5.620 3 C 0.508 3.492 4 O -0.566 6.566 5 C -0.104 4.104 6 C 0.074 3.926 7 H 0.004 0.996 8 C -0.555 4.555 9 H 0.037 0.963 10 C -0.025 4.025 11 N -0.941 5.941 12 Si 1.098 2.902 13 H -0.287 1.287 14 H -0.265 1.265 15 H -0.287 1.287 16 C -0.054 4.054 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.144 4.144 20 C -0.125 4.125 21 C -0.154 4.154 22 C 0.135 3.865 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.112 4.112 26 C -0.117 4.117 27 C -0.119 4.119 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.256 0.744 34 H 0.113 0.887 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.045 0.955 47 H 0.081 0.919 48 H 0.042 0.958 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.312 -12.581 -1.104 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.354 5.354 3 C 0.297 3.703 4 O -0.443 6.443 5 C -0.144 4.144 6 C 0.054 3.946 7 H 0.022 0.978 8 C -0.593 4.593 9 H 0.055 0.945 10 C -0.224 4.224 11 N -0.580 5.580 12 Si 0.923 3.077 13 H -0.213 1.213 14 H -0.190 1.190 15 H -0.214 1.214 16 C -0.054 4.054 17 C -0.141 4.141 18 C -0.141 4.141 19 C -0.162 4.162 20 C -0.142 4.142 21 C -0.172 4.172 22 C 0.032 3.968 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.157 4.157 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.131 0.869 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.153 0.847 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.099 0.901 48 H 0.061 0.939 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.228 -12.175 -0.417 17.983 hybrid contribution -0.583 -0.165 -0.876 1.066 sum -13.811 -12.340 -1.294 18.566 Atomic orbital electron populations 1.21977 0.77660 1.04376 1.02862 1.48097 1.08179 1.04875 1.74298 1.21104 0.87840 0.86415 0.74939 1.90703 1.16411 1.87510 1.49664 1.21555 0.98303 0.91587 1.02951 1.17699 0.91883 0.88268 0.96718 0.97813 1.21757 0.99825 1.43517 0.94187 0.94454 1.26741 0.97530 0.92941 1.05158 1.70846 1.42861 1.42008 1.02289 0.83186 0.75332 0.76388 0.72836 1.21321 1.19048 1.21373 1.20592 0.93764 0.98042 0.93023 1.20995 0.97312 0.97668 0.98138 1.21409 0.99943 0.94185 0.98549 1.21309 0.99814 1.00797 0.94256 1.21298 0.97064 0.95690 1.00197 1.21118 1.00989 0.97007 0.98118 1.21069 0.96216 0.82863 0.96661 1.21795 1.01873 0.96050 0.95725 1.21525 0.99376 0.95117 0.99478 1.21525 1.02449 0.98077 0.92886 1.21525 0.99350 0.95081 0.99532 1.21829 1.01913 0.96140 0.95863 0.91459 0.88795 0.90673 0.88736 0.89435 0.93284 0.86881 0.83825 0.83453 0.84716 0.88891 0.92901 0.89479 0.93732 0.93509 0.89970 0.90650 0.90259 0.93564 0.90060 0.93927 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.52 9.30 127.77 1.19 2.71 16 2 N -0.62 -19.68 2.76 -822.61 -2.27 -21.95 16 3 C 0.51 21.96 7.43 87.66 0.65 22.61 16 4 O -0.57 -31.31 14.34 -3.04 -0.04 -31.35 16 5 C -0.10 -4.24 3.49 29.85 0.10 -4.14 16 6 C 0.07 3.76 1.31 -12.29 -0.02 3.74 16 7 H 0.00 0.22 6.23 -2.38 -0.01 0.20 16 8 C -0.55 -31.87 6.40 25.60 0.16 -31.71 16 9 H 0.04 2.13 7.82 -2.91 -0.02 2.11 16 10 C -0.03 -1.55 5.45 84.66 0.46 -1.09 16 11 N -0.94 -61.54 13.63 21.45 0.29 -61.25 16 12 Si 1.10 55.51 29.91 68.60 2.05 57.56 16 13 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 16 C -0.05 -2.45 4.77 -19.87 -0.09 -2.55 16 17 C -0.12 -4.94 8.88 22.27 0.20 -4.74 16 18 C -0.12 -4.05 10.05 22.27 0.22 -3.82 16 19 C -0.14 -4.48 10.05 22.27 0.22 -4.26 16 20 C -0.12 -4.40 10.05 22.27 0.22 -4.17 16 21 C -0.15 -6.68 9.67 22.27 0.22 -6.47 16 22 C 0.14 3.96 2.52 44.99 0.11 4.07 16 23 C -0.12 -2.61 5.20 30.59 0.16 -2.45 16 24 C -0.12 -2.19 5.92 30.59 0.18 -2.01 16 25 C -0.11 -1.71 5.92 30.59 0.18 -1.53 16 26 C -0.12 -2.25 5.92 30.61 0.18 -2.07 16 27 C -0.12 -2.76 5.19 30.61 0.16 -2.61 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.09 1.44 6.43 -2.39 -0.02 1.42 16 30 H 0.07 1.54 6.44 -2.38 -0.02 1.53 16 31 H 0.09 3.50 7.13 -2.39 -0.02 3.48 16 32 H 0.09 3.09 8.10 -2.39 -0.02 3.07 16 33 H 0.26 16.93 6.68 -92.71 -0.62 16.31 16 34 H 0.11 4.45 7.80 -2.91 -0.02 4.42 16 35 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 36 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 37 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16 39 H 0.05 2.05 6.90 -2.39 -0.02 2.03 16 40 H 0.09 1.53 7.67 -2.39 -0.02 1.51 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 46 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.09 1.58 6.66 -2.38 -0.02 1.56 16 Total: -1.00 -79.24 382.76 5.60 -73.64 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 1.05 Total: 23.82 kcal Atomic # 6 Polarization: -44.99 SS G_CDS: 4.52 Total: -40.47 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.98 Total: -83.20 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.04 Total: -31.35 kcal Atomic # 14 Polarization: 55.51 SS G_CDS: 2.05 Total: 57.56 kcal Total: -79.24 5.60 -73.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353825895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.313 kcal (2) G-P(sol) polarization free energy of solvation -79.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds