Wall clock time and date at job start Tue Mar 31 2020 11:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34768 * 120.00172 * 2 1 4 4 O 1.21291 * 120.00211 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00475 * 0.02562 * 3 2 1 6 6 C 1.52993 * 109.47554 * 179.97438 * 5 3 2 7 7 H 1.09006 * 109.47046 * 304.99864 * 6 5 3 8 8 C 1.50698 * 109.47399 * 64.99685 * 6 5 3 9 9 H 1.08001 * 119.99781 * 29.58475 * 8 6 5 10 10 C 1.37874 * 120.00077 * 209.58459 * 8 6 5 11 11 N 1.31512 * 120.00311 * 4.94229 * 10 8 6 12 12 Si 1.86808 * 119.99673 * 184.94366 * 10 8 6 13 13 H 1.48497 * 109.47239 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46842 * 120.00269 * 12 10 8 15 15 H 1.48499 * 109.46938 * 239.99591 * 12 10 8 16 16 C 1.50704 * 109.47472 * 185.00167 * 6 5 3 17 17 C 1.38236 * 119.99374 * 296.76965 * 16 6 5 18 18 C 1.38243 * 119.99560 * 179.80823 * 17 16 6 19 19 C 1.38229 * 119.99787 * 0.39661 * 18 17 16 20 20 C 1.38238 * 120.00563 * 359.85502 * 19 18 17 21 21 C 1.38234 * 120.00178 * 117.03759 * 16 6 5 22 22 C 1.46496 * 119.99457 * 180.02562 * 2 1 3 23 23 C 1.53000 * 109.47414 * 59.99760 * 22 2 1 24 24 C 1.52999 * 109.47119 * 179.97438 * 23 22 2 25 25 C 1.53001 * 109.47367 * 59.99904 * 24 23 22 26 26 C 1.53000 * 109.47079 * 300.00121 * 25 24 23 27 27 C 1.52999 * 109.47119 * 59.99727 * 26 25 24 28 28 H 1.08999 * 109.47331 * 89.99012 * 1 2 3 29 29 H 1.08998 * 109.47773 * 209.99795 * 1 2 3 30 30 H 1.09005 * 109.46606 * 329.99740 * 1 2 3 31 31 H 1.09000 * 109.47198 * 299.99910 * 5 3 2 32 32 H 1.08997 * 109.47027 * 59.99386 * 5 3 2 33 33 H 0.97002 * 119.99905 * 179.97438 * 11 10 8 34 34 H 1.07998 * 120.00336 * 359.97438 * 17 16 6 35 35 H 1.07997 * 119.99839 * 180.22366 * 18 17 16 36 36 H 1.08001 * 119.99966 * 179.83422 * 19 18 17 37 37 H 1.08000 * 120.00158 * 179.97438 * 20 19 18 38 38 H 1.07995 * 120.00068 * 359.97438 * 21 16 6 39 39 H 1.09005 * 109.46789 * 179.97438 * 22 2 1 40 40 H 1.08992 * 109.47200 * 299.99498 * 23 22 2 41 41 H 1.09002 * 109.46910 * 60.00209 * 23 22 2 42 42 H 1.09002 * 109.47617 * 300.00052 * 24 23 22 43 43 H 1.09001 * 109.47847 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.47632 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.46805 * 60.00039 * 25 24 23 46 46 H 1.08997 * 109.47514 * 299.99619 * 26 25 24 47 47 H 1.09002 * 109.46910 * 179.97438 * 26 25 24 48 48 H 1.09001 * 109.47179 * 179.97438 * 27 26 25 49 49 H 1.09002 * 109.47617 * 59.99948 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3797 3.6351 0.0011 7 1 3.0639 3.5278 0.8429 8 6 3.1627 3.6273 -1.2865 9 1 2.7139 3.2393 -2.1890 10 6 4.4518 4.1154 -1.3125 11 7 5.0329 4.4976 -0.1963 12 14 5.3732 4.2340 -2.9332 13 1 4.5041 3.7449 -4.0336 14 1 5.7455 5.6487 -3.1885 15 1 6.6022 3.4032 -2.8658 16 6 1.6305 4.9368 0.1256 17 6 0.7496 5.3246 -0.8666 18 6 0.0592 6.5167 -0.7506 19 6 0.2560 7.3247 0.3536 20 6 1.1409 6.9393 1.3433 21 6 1.8282 5.7454 1.2291 22 6 2.1973 -1.2688 -0.0006 23 6 1.8277 -2.0705 -1.2501 24 6 2.5930 -3.3953 -1.2510 25 6 2.2240 -4.1984 -0.0020 26 6 2.5937 -3.3966 1.2475 27 6 1.8283 -2.0718 1.2484 28 1 -0.3634 0.0002 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.7585 2.5303 -0.8891 32 1 0.7591 2.5298 0.8907 33 1 5.9401 4.8406 -0.2145 34 1 0.5986 4.6951 -1.7311 35 1 -0.6317 6.8181 -1.5240 36 1 -0.2812 8.2573 0.4429 37 1 1.2949 7.5708 2.2058 38 1 2.5194 5.4441 2.0024 39 1 3.2690 -1.0696 -0.0009 40 1 0.7561 -2.2697 -1.2501 41 1 2.0911 -1.4986 -2.1399 42 1 3.6647 -3.1959 -1.2511 43 1 2.3301 -3.9664 -2.1414 44 1 2.7689 -5.1424 -0.0028 45 1 1.1524 -4.3979 -0.0019 46 1 3.6653 -3.1971 1.2474 47 1 2.3304 -3.9686 2.1373 48 1 2.0914 -1.5008 2.1388 49 1 0.7567 -2.2712 1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353825896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:49 Heat of formation + Delta-G solvation = -32.782166 kcal Electronic energy + Delta-G solvation = -26969.221427 eV Core-core repulsion = 23474.024738 eV Total energy + Delta-G solvation = -3495.196688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -39.75400 -38.42667 -37.57562 -34.58770 -33.92502 -31.45604 -30.77254 -30.07257 -29.97006 -28.40544 -26.45468 -25.46658 -23.05772 -22.60588 -21.94913 -21.53652 -19.89042 -19.45777 -18.32255 -16.61153 -16.32580 -16.04388 -15.66208 -14.88631 -14.79337 -14.41269 -14.15856 -14.13740 -13.93385 -13.82561 -13.09174 -12.98401 -12.67514 -12.49720 -12.36768 -12.29054 -12.16648 -12.04278 -11.89845 -11.62075 -11.57561 -11.13527 -11.09054 -10.87032 -10.68075 -10.65822 -10.51199 -10.28067 -10.23145 -10.20952 -9.99144 -9.38707 -9.05479 -8.71791 -8.30230 -8.09551 -8.02936 -7.59696 -5.89213 -3.88011 2.30381 2.36182 3.38787 3.45811 3.48125 3.49975 3.57995 4.54569 4.66980 4.76472 4.77165 4.88637 5.10536 5.23061 5.28435 5.41480 5.46317 5.48054 5.51100 5.61172 5.62213 5.67625 5.69515 5.73743 5.75110 5.85944 5.87650 5.98395 6.02271 6.09721 6.13397 6.15317 6.21308 6.24988 6.31085 6.40253 6.42878 6.47917 6.56450 6.81764 6.92294 7.03810 7.11675 7.32601 7.47529 7.56304 7.92088 7.96902 8.02267 8.10712 8.42794 9.10844 9.13620 9.72751 11.21023 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.004062 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.759929 B = 6892.113304 C = 8133.101223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.631 5.631 3 C 0.514 3.486 4 O -0.493 6.493 5 C -0.118 4.118 6 C 0.077 3.923 7 H 0.072 0.928 8 C -0.488 4.488 9 H 0.050 0.950 10 C 0.076 3.924 11 N -0.881 5.881 12 Si 0.884 3.116 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.285 1.285 16 C -0.022 4.022 17 C -0.115 4.115 18 C -0.132 4.132 19 C -0.156 4.156 20 C -0.129 4.129 21 C -0.119 4.119 22 C 0.141 3.859 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.126 4.126 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.258 0.742 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 -11.299 2.284 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.302 3.698 4 O -0.364 6.364 5 C -0.158 4.158 6 C 0.059 3.941 7 H 0.090 0.910 8 C -0.525 4.525 9 H 0.068 0.932 10 C -0.127 4.127 11 N -0.518 5.518 12 Si 0.712 3.288 13 H -0.199 1.199 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.022 4.022 17 C -0.133 4.133 18 C -0.151 4.151 19 C -0.174 4.174 20 C -0.147 4.147 21 C -0.137 4.137 22 C 0.038 3.962 23 C -0.164 4.164 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.155 4.155 27 C -0.165 4.165 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.241 -11.181 2.352 15.343 hybrid contribution 0.481 0.244 -1.027 1.160 sum -9.759 -10.937 1.325 14.718 Atomic orbital electron populations 1.21622 0.80920 1.02424 1.01099 1.48097 1.06172 1.05766 1.76749 1.20946 0.88573 0.84766 0.75508 1.90753 1.13604 1.86337 1.45722 1.21778 0.99351 0.93657 1.01054 1.17854 0.91065 0.84351 1.00879 0.90984 1.20696 0.97742 1.40507 0.93583 0.93190 1.24808 0.97176 0.95039 0.95635 1.69913 1.13447 1.42855 1.25602 0.86672 0.80097 0.77356 0.84644 1.19943 1.21232 1.21150 1.20765 0.91506 0.98822 0.91144 1.20955 0.97141 0.96336 0.98828 1.20977 1.00675 0.95670 0.97729 1.20793 1.01071 0.99668 0.95843 1.20987 0.97913 0.97073 0.98703 1.21100 0.99245 0.94759 0.98639 1.20913 0.98733 0.82990 0.93589 1.21862 1.00098 0.95897 0.98543 1.21505 1.00695 0.95754 0.97608 1.21545 1.01072 0.98158 0.94832 1.21498 1.00674 0.95706 0.97629 1.21874 1.00160 0.95974 0.98452 0.93430 0.91930 0.91107 0.90650 0.91784 0.93255 0.86888 0.87676 0.87822 0.87652 0.86824 0.88281 0.92092 0.91609 0.91707 0.92043 0.92209 0.92188 0.91696 0.92038 0.91692 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 9.30 59.85 0.56 1.53 16 2 N -0.63 -9.95 2.76 -173.93 -0.48 -10.43 16 3 C 0.51 10.54 7.42 -10.99 -0.08 10.46 16 4 O -0.49 -12.57 14.31 5.55 0.08 -12.49 16 5 C -0.12 -2.33 3.50 -27.89 -0.10 -2.43 16 6 C 0.08 1.87 1.68 -92.93 -0.16 1.72 16 7 H 0.07 2.01 6.95 -51.93 -0.36 1.65 16 8 C -0.49 -13.26 6.38 -34.44 -0.22 -13.48 16 9 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 10 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 11 N -0.88 -26.21 12.85 55.43 0.71 -25.50 16 12 Si 0.88 22.44 29.54 -169.99 -5.02 17.42 16 13 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 16 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 17 C -0.11 -2.33 8.86 -39.58 -0.35 -2.68 16 18 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 19 C -0.16 -2.72 10.05 -39.58 -0.40 -3.12 16 20 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 21 C -0.12 -2.54 9.67 -39.58 -0.38 -2.93 16 22 C 0.14 2.03 2.52 -67.93 -0.17 1.86 16 23 C -0.13 -1.53 5.20 -26.73 -0.14 -1.67 16 24 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 25 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 26 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 27 C -0.13 -1.48 5.18 -26.73 -0.14 -1.61 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 30 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 31 H 0.08 1.39 7.73 -51.93 -0.40 0.99 16 32 H 0.06 1.11 7.40 -51.93 -0.38 0.73 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.11 2.22 7.75 -52.49 -0.41 1.81 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.11 2.46 7.95 -52.49 -0.42 2.04 16 39 H 0.10 1.75 6.90 -51.93 -0.36 1.39 16 40 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.06 0.64 6.67 -51.93 -0.35 0.29 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -31.99 384.10 -10.73 -42.72 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.36 Total: 3.27 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -3.45 Total: -20.78 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.23 Total: -35.93 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.99 -10.73 -42.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353825896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.933 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds