Wall clock time and date at job start Tue Mar 31 2020 11:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34768 * 120.00172 * 2 1 4 4 O 1.21291 * 120.00211 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00475 * 0.02562 * 3 2 1 6 6 C 1.52993 * 109.47554 * 179.97438 * 5 3 2 7 7 H 1.09006 * 109.47046 * 304.99864 * 6 5 3 8 8 C 1.50698 * 109.47399 * 64.99685 * 6 5 3 9 9 H 1.08001 * 119.99781 * 29.58475 * 8 6 5 10 10 C 1.37874 * 120.00077 * 209.58459 * 8 6 5 11 11 N 1.31512 * 120.00311 * 4.94229 * 10 8 6 12 12 Si 1.86808 * 119.99673 * 184.94366 * 10 8 6 13 13 H 1.48497 * 109.47239 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46842 * 120.00269 * 12 10 8 15 15 H 1.48499 * 109.46938 * 239.99591 * 12 10 8 16 16 C 1.50704 * 109.47472 * 185.00167 * 6 5 3 17 17 C 1.38236 * 119.99374 * 296.76965 * 16 6 5 18 18 C 1.38243 * 119.99560 * 179.80823 * 17 16 6 19 19 C 1.38229 * 119.99787 * 0.39661 * 18 17 16 20 20 C 1.38238 * 120.00563 * 359.85502 * 19 18 17 21 21 C 1.38234 * 120.00178 * 117.03759 * 16 6 5 22 22 C 1.46496 * 119.99457 * 180.02562 * 2 1 3 23 23 C 1.53000 * 109.47414 * 59.99760 * 22 2 1 24 24 C 1.52999 * 109.47119 * 179.97438 * 23 22 2 25 25 C 1.53001 * 109.47367 * 59.99904 * 24 23 22 26 26 C 1.53000 * 109.47079 * 300.00121 * 25 24 23 27 27 C 1.52999 * 109.47119 * 59.99727 * 26 25 24 28 28 H 1.08999 * 109.47331 * 89.99012 * 1 2 3 29 29 H 1.08998 * 109.47773 * 209.99795 * 1 2 3 30 30 H 1.09005 * 109.46606 * 329.99740 * 1 2 3 31 31 H 1.09000 * 109.47198 * 299.99910 * 5 3 2 32 32 H 1.08997 * 109.47027 * 59.99386 * 5 3 2 33 33 H 0.97002 * 119.99905 * 179.97438 * 11 10 8 34 34 H 1.07998 * 120.00336 * 359.97438 * 17 16 6 35 35 H 1.07997 * 119.99839 * 180.22366 * 18 17 16 36 36 H 1.08001 * 119.99966 * 179.83422 * 19 18 17 37 37 H 1.08000 * 120.00158 * 179.97438 * 20 19 18 38 38 H 1.07995 * 120.00068 * 359.97438 * 21 16 6 39 39 H 1.09005 * 109.46789 * 179.97438 * 22 2 1 40 40 H 1.08992 * 109.47200 * 299.99498 * 23 22 2 41 41 H 1.09002 * 109.46910 * 60.00209 * 23 22 2 42 42 H 1.09002 * 109.47617 * 300.00052 * 24 23 22 43 43 H 1.09001 * 109.47847 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.47632 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.46805 * 60.00039 * 25 24 23 46 46 H 1.08997 * 109.47514 * 299.99619 * 26 25 24 47 47 H 1.09002 * 109.46910 * 179.97438 * 26 25 24 48 48 H 1.09001 * 109.47179 * 179.97438 * 27 26 25 49 49 H 1.09002 * 109.47617 * 59.99948 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3797 3.6351 0.0011 7 1 3.0639 3.5278 0.8429 8 6 3.1627 3.6273 -1.2865 9 1 2.7139 3.2393 -2.1890 10 6 4.4518 4.1154 -1.3125 11 7 5.0329 4.4976 -0.1963 12 14 5.3732 4.2340 -2.9332 13 1 4.5041 3.7449 -4.0336 14 1 5.7455 5.6487 -3.1885 15 1 6.6022 3.4032 -2.8658 16 6 1.6305 4.9368 0.1256 17 6 0.7496 5.3246 -0.8666 18 6 0.0592 6.5167 -0.7506 19 6 0.2560 7.3247 0.3536 20 6 1.1409 6.9393 1.3433 21 6 1.8282 5.7454 1.2291 22 6 2.1973 -1.2688 -0.0006 23 6 1.8277 -2.0705 -1.2501 24 6 2.5930 -3.3953 -1.2510 25 6 2.2240 -4.1984 -0.0020 26 6 2.5937 -3.3966 1.2475 27 6 1.8283 -2.0718 1.2484 28 1 -0.3634 0.0002 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.7585 2.5303 -0.8891 32 1 0.7591 2.5298 0.8907 33 1 5.9401 4.8406 -0.2145 34 1 0.5986 4.6951 -1.7311 35 1 -0.6317 6.8181 -1.5240 36 1 -0.2812 8.2573 0.4429 37 1 1.2949 7.5708 2.2058 38 1 2.5194 5.4441 2.0024 39 1 3.2690 -1.0696 -0.0009 40 1 0.7561 -2.2697 -1.2501 41 1 2.0911 -1.4986 -2.1399 42 1 3.6647 -3.1959 -1.2511 43 1 2.3301 -3.9664 -2.1414 44 1 2.7689 -5.1424 -0.0028 45 1 1.1524 -4.3979 -0.0019 46 1 3.6653 -3.1971 1.2474 47 1 2.3304 -3.9686 2.1373 48 1 2.0914 -1.5008 2.1388 49 1 0.7567 -2.2712 1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353825896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:46 Heat of formation + Delta-G solvation = -49.115185 kcal Electronic energy + Delta-G solvation = -26969.929680 eV Core-core repulsion = 23474.024738 eV Total energy + Delta-G solvation = -3495.904941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12976 -39.90922 -38.87005 -35.94335 -35.70612 -33.42420 -31.68666 -31.51262 -31.24401 -29.83614 -27.70348 -27.27768 -24.70997 -23.52566 -23.25424 -22.94135 -21.38202 -20.54373 -19.79932 -18.50705 -17.95007 -17.30393 -17.08485 -16.47214 -16.31351 -15.86743 -15.57036 -15.42988 -15.07512 -14.91049 -14.61076 -14.34745 -13.98386 -13.94518 -13.87539 -13.52505 -13.45920 -13.25971 -13.15679 -13.08848 -13.02842 -12.88502 -12.53633 -12.43726 -12.07040 -12.04070 -11.84736 -11.69675 -11.49947 -11.27919 -11.24320 -11.15452 -10.98188 -10.54341 -10.30965 -9.54663 -9.41197 -9.19900 -8.04588 -6.06975 0.77402 0.83637 1.33050 1.35264 1.43814 1.97359 2.22119 2.44398 3.17884 3.34376 3.69246 3.84960 3.99775 4.04759 4.24685 4.25205 4.31839 4.34645 4.37206 4.41446 4.50305 4.53938 4.55125 4.58578 4.61670 4.70234 4.72542 4.80702 4.86908 4.91560 4.94908 5.01661 5.10888 5.15964 5.20537 5.21577 5.24287 5.34029 5.37618 5.42775 5.51095 5.53720 5.65531 5.77470 5.83355 5.86141 5.96214 6.17776 6.41344 6.46093 6.62819 7.00526 7.54315 7.58576 9.05374 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.004062 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.759929 B = 6892.113304 C = 8133.101223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.622 5.622 3 C 0.506 3.494 4 O -0.560 6.560 5 C -0.109 4.109 6 C 0.081 3.919 7 H 0.021 0.979 8 C -0.479 4.479 9 H 0.044 0.956 10 C 0.019 3.981 11 N -0.918 5.918 12 Si 0.934 3.066 13 H -0.264 1.264 14 H -0.279 1.279 15 H -0.293 1.293 16 C -0.046 4.046 17 C -0.126 4.126 18 C -0.125 4.125 19 C -0.147 4.147 20 C -0.128 4.128 21 C -0.145 4.145 22 C 0.136 3.864 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.112 4.112 26 C -0.117 4.117 27 C -0.118 4.118 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.253 0.747 34 H 0.115 0.885 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.045 0.955 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.082 0.918 48 H 0.046 0.954 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.002 -11.741 1.473 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.357 5.357 3 C 0.295 3.705 4 O -0.437 6.437 5 C -0.149 4.149 6 C 0.062 3.938 7 H 0.039 0.961 8 C -0.517 4.517 9 H 0.062 0.938 10 C -0.179 4.179 11 N -0.558 5.558 12 Si 0.761 3.239 13 H -0.189 1.189 14 H -0.205 1.205 15 H -0.219 1.219 16 C -0.046 4.046 17 C -0.144 4.144 18 C -0.143 4.143 19 C -0.164 4.164 20 C -0.146 4.146 21 C -0.163 4.163 22 C 0.032 3.968 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.149 4.149 26 C -0.155 4.155 27 C -0.156 4.156 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.133 0.867 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.065 0.935 47 H 0.100 0.900 48 H 0.064 0.936 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.199 -11.659 1.527 18.436 hybrid contribution 1.572 0.367 -0.725 1.770 sum -12.627 -11.292 0.802 16.959 Atomic orbital electron populations 1.21959 0.77766 1.04379 1.02701 1.48110 1.08118 1.04884 1.74575 1.21159 0.87917 0.86383 0.74996 1.90728 1.16308 1.87407 1.49259 1.21635 0.98494 0.91811 1.02923 1.17624 0.91392 0.87475 0.97349 0.96081 1.20964 0.97906 1.38453 0.94409 0.93815 1.25507 0.98433 0.95796 0.98143 1.70065 1.13449 1.45062 1.27249 0.85877 0.78809 0.77366 0.81868 1.18858 1.20529 1.21947 1.20546 0.93224 0.98033 0.92820 1.21036 0.97386 0.97765 0.98246 1.21379 1.00052 0.94265 0.98623 1.21270 0.99891 1.00694 0.94580 1.21286 0.97271 0.95970 1.00095 1.21099 1.00217 0.96462 0.98518 1.21037 0.96245 0.82979 0.96495 1.21798 1.01794 0.96046 0.95955 1.21522 0.99341 0.95179 0.99487 1.21522 1.02421 0.98050 0.92934 1.21518 0.99387 0.95167 0.99399 1.21812 1.01884 0.96047 0.95851 0.91887 0.88838 0.90417 0.88875 0.89336 0.93837 0.86673 0.84006 0.83765 0.85042 0.89025 0.92925 0.89530 0.94054 0.93607 0.90207 0.90730 0.90275 0.93539 0.89964 0.93560 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.54 9.30 127.77 1.19 2.73 16 2 N -0.62 -19.75 2.76 -822.60 -2.27 -22.02 16 3 C 0.51 21.84 7.42 87.66 0.65 22.49 16 4 O -0.56 -31.03 14.31 -3.06 -0.04 -31.08 16 5 C -0.11 -4.40 3.50 29.85 0.10 -4.29 16 6 C 0.08 4.11 1.68 -12.29 -0.02 4.09 16 7 H 0.02 1.27 6.95 -2.38 -0.02 1.25 16 8 C -0.48 -27.23 6.38 25.60 0.16 -27.06 16 9 H 0.04 2.47 7.82 -2.91 -0.02 2.44 16 10 C 0.02 1.16 5.45 84.65 0.46 1.62 16 11 N -0.92 -58.16 12.85 21.45 0.28 -57.88 16 12 Si 0.93 47.77 29.54 68.60 2.03 49.80 16 13 H -0.26 -12.90 7.11 99.48 0.71 -12.20 16 14 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 15 H -0.29 -15.18 7.11 99.48 0.71 -14.48 16 16 C -0.05 -2.08 4.77 -19.86 -0.09 -2.17 16 17 C -0.13 -4.97 8.86 22.27 0.20 -4.78 16 18 C -0.13 -4.08 10.05 22.27 0.22 -3.85 16 19 C -0.15 -4.56 10.05 22.27 0.22 -4.34 16 20 C -0.13 -4.55 10.05 22.27 0.22 -4.33 16 21 C -0.14 -6.33 9.67 22.27 0.22 -6.12 16 22 C 0.14 3.99 2.52 44.99 0.11 4.11 16 23 C -0.12 -2.77 5.20 30.59 0.16 -2.61 16 24 C -0.12 -2.30 5.92 30.59 0.18 -2.12 16 25 C -0.11 -1.74 5.92 30.59 0.18 -1.56 16 26 C -0.12 -2.20 5.92 30.59 0.18 -2.02 16 27 C -0.12 -2.64 5.18 30.59 0.16 -2.48 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.41 6.43 -2.39 -0.02 1.39 16 30 H 0.08 1.55 6.44 -2.38 -0.02 1.53 16 31 H 0.09 3.39 7.73 -2.39 -0.02 3.37 16 32 H 0.09 3.09 7.40 -2.39 -0.02 3.07 16 33 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.12 4.38 7.75 -2.91 -0.02 4.36 16 35 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 36 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 38 H 0.09 4.28 7.95 -2.91 -0.02 4.26 16 39 H 0.05 2.04 6.90 -2.38 -0.02 2.03 16 40 H 0.09 1.60 7.67 -2.39 -0.02 1.59 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.09 1.52 6.67 -2.39 -0.02 1.51 16 Total: -1.00 -76.89 384.10 5.40 -71.49 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.90 Total: 22.38 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 4.51 Total: -32.69 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -2.00 Total: -79.90 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.04 Total: -31.08 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -76.89 5.40 -71.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353825896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.371 kcal (2) G-P(sol) polarization free energy of solvation -76.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds