Wall clock time and date at job start Tue Mar 31 2020 10:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 108.45195 * 2 1 4 4 C 1.52561 * 108.51339 * 242.30626 * 2 1 3 5 5 C 1.50881 * 109.35526 * 153.88727 * 4 2 1 6 6 C 1.53949 * 110.09351 * 91.88690 * 5 4 2 7 7 N 1.47604 * 112.14302 * 319.43608 * 6 5 4 8 8 C 1.34774 * 118.63966 * 137.87236 * 7 6 5 9 9 O 1.21285 * 119.99921 * 180.02562 * 8 7 6 10 10 C 1.50696 * 120.00250 * 359.97438 * 8 7 6 11 11 C 1.53005 * 109.47453 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47210 * 305.00865 * 11 10 8 13 13 C 1.50703 * 109.46588 * 65.00365 * 11 10 8 14 14 H 1.07998 * 120.00176 * 234.68149 * 13 11 10 15 15 C 1.37879 * 120.00071 * 54.67817 * 13 11 10 16 16 N 1.31520 * 120.00073 * 4.92195 * 15 13 11 17 17 Si 1.86794 * 120.00023 * 184.91506 * 15 13 11 18 18 H 1.48504 * 109.47205 * 90.00491 * 17 15 13 19 19 H 1.48504 * 109.47324 * 210.00035 * 17 15 13 20 20 H 1.48500 * 109.47300 * 330.00338 * 17 15 13 21 21 C 1.50698 * 109.47496 * 185.00101 * 11 10 8 22 22 C 1.38233 * 119.99847 * 151.46531 * 21 11 10 23 23 C 1.38234 * 119.99856 * 179.77039 * 22 21 11 24 24 C 1.38242 * 120.00044 * 0.50594 * 23 22 21 25 25 C 1.38237 * 119.99725 * 359.74678 * 24 23 22 26 26 C 1.38235 * 120.00044 * 0.02562 * 25 24 23 27 27 C 1.44576 * 122.71313 * 318.14519 * 7 6 5 28 28 C 1.47094 * 108.38508 * 117.61643 * 2 1 3 29 29 H 1.08995 * 109.47266 * 177.68602 * 1 2 3 30 30 H 1.08997 * 109.46974 * 297.69769 * 1 2 3 31 31 H 1.09005 * 109.46502 * 57.69271 * 1 2 3 32 32 H 1.08999 * 109.49139 * 33.92291 * 4 2 1 33 33 H 1.09004 * 109.49381 * 273.85257 * 4 2 1 34 34 H 1.09001 * 109.36361 * 331.69676 * 5 4 2 35 35 H 1.09000 * 109.36970 * 212.07810 * 5 4 2 36 36 H 1.09000 * 108.94105 * 198.75055 * 6 5 4 37 37 H 1.08998 * 108.87641 * 80.07821 * 6 5 4 38 38 H 1.09006 * 109.46617 * 60.00567 * 10 8 7 39 39 H 1.08994 * 109.47674 * 300.00821 * 10 8 7 40 40 H 0.96997 * 120.00295 * 179.97438 * 16 15 13 41 41 H 1.07999 * 120.00328 * 359.97438 * 22 21 11 42 42 H 1.07998 * 120.00082 * 180.22661 * 23 22 21 43 43 H 1.07994 * 119.99997 * 179.72246 * 24 23 22 44 44 H 1.08000 * 119.99812 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.00037 * 179.97438 * 26 25 24 46 46 H 1.09007 * 109.44763 * 210.48418 * 27 7 6 47 47 H 1.08998 * 109.45205 * 330.40808 * 27 7 6 48 48 H 1.08996 * 109.33497 * 304.23215 * 28 2 1 49 49 H 1.09003 * 109.32837 * 63.88378 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8750 1.0339 0.0000 4 6 2.0145 -0.6723 -1.2809 5 6 3.3853 -0.1493 -1.6326 6 6 4.4698 -1.0490 -1.0125 7 7 4.1213 -1.4777 0.3562 8 6 4.3562 -2.7562 0.7122 9 8 4.0789 -3.1350 1.8306 10 6 4.9623 -3.7153 -0.2795 11 6 5.1234 -5.0898 0.3732 12 1 5.7023 -4.9904 1.2913 13 6 3.7641 -5.6553 0.6951 14 1 3.5355 -5.9718 1.7020 15 6 2.8122 -5.7686 -0.2959 16 7 3.1202 -5.4746 -1.5403 17 14 1.0852 -6.3399 0.1287 18 1 0.2419 -5.1632 0.4597 19 1 0.5010 -7.0563 -1.0335 20 1 1.1397 -7.2543 1.2975 21 6 5.8408 -6.0154 -0.5753 22 6 6.6120 -7.0502 -0.0802 23 6 7.2662 -7.9022 -0.9503 24 6 7.1576 -7.7129 -2.3154 25 6 6.3905 -6.6749 -2.8104 26 6 5.7325 -5.8258 -1.9403 27 6 3.5331 -0.5843 1.3289 28 6 1.9940 -0.6471 1.2368 29 1 -0.3633 -1.0268 -0.0415 30 1 -0.3633 0.4777 0.9099 31 1 -0.3632 0.5493 -0.8686 32 1 1.3215 -0.4507 -2.0925 33 1 2.0645 -1.7506 -1.1293 34 1 3.4945 0.8651 -1.2490 35 1 3.5010 -0.1383 -2.7164 36 1 5.4108 -0.4996 -0.9826 37 1 4.5958 -1.9322 -1.6388 38 1 5.9388 -3.3455 -0.5924 39 1 4.3102 -3.7996 -1.1487 40 1 2.4507 -5.5546 -2.2376 41 1 6.7009 -7.1951 0.9863 42 1 7.8659 -8.7129 -0.5636 43 1 7.6723 -8.3758 -2.9951 44 1 6.3059 -6.5268 -3.8768 45 1 5.1335 -5.0145 -2.3270 46 1 3.8446 -0.8819 2.3302 47 1 3.8662 0.4350 1.1336 48 1 1.5588 -0.1369 2.0961 49 1 1.6781 -1.6903 1.2386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355283014.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:39 Heat of formation + Delta-G solvation = -21.000430 kcal Electronic energy + Delta-G solvation = -28023.268825 eV Core-core repulsion = 24528.583031 eV Total energy + Delta-G solvation = -3494.685794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.84057 -38.29344 -37.26784 -34.32680 -34.16529 -32.32143 -31.04710 -29.83651 -29.16517 -27.89613 -25.89636 -25.75426 -23.64670 -22.44180 -21.54980 -21.08175 -19.97344 -19.61561 -17.93231 -16.61819 -16.12742 -15.82950 -15.51379 -15.08569 -14.76159 -14.33749 -14.07918 -13.86251 -13.70099 -13.58881 -13.12842 -12.96049 -12.63266 -12.52350 -12.24383 -12.20067 -11.81547 -11.57671 -11.48252 -11.40134 -11.36928 -10.98581 -10.87629 -10.80735 -10.70390 -10.38873 -10.33973 -10.29092 -10.20695 -10.10589 -9.91257 -9.25910 -9.13093 -8.69156 -8.35790 -7.98385 -7.78565 -7.41851 -5.95382 -4.04305 2.51631 2.60318 3.31973 3.37630 3.43585 3.64078 3.79394 4.45201 4.76793 4.95841 4.99531 5.00309 5.22505 5.27413 5.30047 5.45354 5.48545 5.75235 5.79528 5.82939 5.83851 5.86021 5.91616 5.94067 5.96301 6.03495 6.05276 6.11110 6.21142 6.33648 6.36805 6.40652 6.46175 6.50036 6.53611 6.61657 6.70717 6.73939 6.79836 7.15025 7.17385 7.27266 7.35199 7.49526 7.56498 7.70964 7.95603 8.07651 8.19300 8.20202 8.37917 8.92041 9.25442 9.58467 10.98750 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.005014 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.588716 B = 5583.412694 C = 6264.304558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 H 0.059 0.941 4 C -0.113 4.113 5 C -0.128 4.128 6 C 0.111 3.889 7 N -0.621 5.621 8 C 0.521 3.479 9 O -0.526 6.526 10 C -0.137 4.137 11 C 0.087 3.913 12 H 0.036 0.964 13 C -0.467 4.467 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.888 3.112 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.026 4.026 22 C -0.132 4.132 23 C -0.141 4.141 24 C -0.155 4.155 25 C -0.143 4.143 26 C -0.068 4.068 27 C 0.124 3.876 28 C -0.133 4.133 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.133 0.867 40 H 0.259 0.741 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.139 0.861 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 10.685 -2.885 11.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 H 0.077 0.923 4 C -0.151 4.151 5 C -0.166 4.166 6 C -0.012 4.012 7 N -0.357 5.357 8 C 0.311 3.689 9 O -0.400 6.400 10 C -0.177 4.177 11 C 0.068 3.932 12 H 0.054 0.946 13 C -0.505 4.505 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.529 5.529 17 Si 0.717 3.283 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.026 4.026 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.173 4.173 25 C -0.161 4.161 26 C -0.086 4.086 27 C -0.001 4.001 28 C -0.171 4.171 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.156 0.844 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.472 10.479 -2.430 10.857 hybrid contribution -1.269 -0.448 -0.019 1.346 sum 0.203 10.031 -2.449 10.327 Atomic orbital electron populations 1.21982 0.95963 1.01827 1.00941 1.20039 0.95428 0.99351 0.95449 0.92267 1.21129 0.95677 1.01952 0.96330 1.21728 0.95372 0.98997 1.00521 1.21890 0.96338 0.99707 0.83300 1.47835 1.64390 1.11149 1.12352 1.21193 0.77376 0.81141 0.89160 1.90600 1.51336 1.75710 1.22363 1.21963 0.99630 0.95288 1.00859 1.17650 0.95074 0.88682 0.91821 0.94562 1.20971 0.95061 1.39319 0.95123 0.92378 1.24844 0.98408 0.95614 0.94905 1.69672 1.33326 1.50236 0.99679 0.86624 0.85082 0.78735 0.77844 1.20885 1.21472 1.20055 1.20342 0.91292 0.96036 0.94963 1.20901 0.99039 0.96467 0.98654 1.20797 1.01838 0.99689 0.93649 1.20760 1.02145 0.99385 0.94992 1.21042 0.99361 0.97061 0.98675 1.21342 0.94684 0.99857 0.92760 1.21064 0.92273 0.93028 0.93685 1.21189 0.96734 1.02252 0.96953 0.92698 0.93142 0.93147 0.92324 0.90659 0.92170 0.91053 0.92821 0.89280 0.93193 0.84954 0.93024 0.87701 0.88133 0.88337 0.88123 0.84353 0.90491 0.92025 0.91791 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.88 37.16 0.33 -1.48 16 2 C -0.08 -1.08 2.16 -93.68 -0.20 -1.28 16 3 H 0.06 0.68 7.36 -51.93 -0.38 0.30 16 4 C -0.11 -1.53 4.93 -28.02 -0.14 -1.67 16 5 C -0.13 -1.50 5.71 -27.30 -0.16 -1.65 16 6 C 0.11 1.52 5.95 -2.94 -0.02 1.50 16 7 N -0.62 -10.48 2.25 -172.89 -0.39 -10.86 16 8 C 0.52 11.06 7.37 -10.99 -0.08 10.98 16 9 O -0.53 -13.02 14.41 5.55 0.08 -12.94 16 10 C -0.14 -2.93 2.40 -27.88 -0.07 -3.00 16 11 C 0.09 2.09 1.97 -92.92 -0.18 1.91 16 12 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 13 C -0.47 -12.53 7.27 -34.44 -0.25 -12.78 16 14 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 15 C 0.06 1.62 5.12 -17.82 -0.09 1.52 16 16 N -0.89 -22.37 7.99 55.43 0.44 -21.93 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C -0.03 -0.59 4.69 -104.63 -0.49 -1.08 16 22 C -0.13 -2.84 9.71 -39.58 -0.38 -3.23 16 23 C -0.14 -2.74 10.05 -39.58 -0.40 -3.13 16 24 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 25 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 26 C -0.07 -1.48 7.45 -39.58 -0.29 -1.78 16 27 C 0.12 1.87 5.34 -4.38 -0.02 1.84 16 28 C -0.13 -1.96 4.89 -28.88 -0.14 -2.10 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.56 8.07 -51.93 -0.42 0.14 16 31 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.06 0.73 7.81 -51.93 -0.41 0.32 16 33 H 0.07 1.30 7.48 -51.93 -0.39 0.91 16 34 H 0.06 0.63 7.32 -51.93 -0.38 0.25 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.32 5.82 -51.93 -0.30 1.01 16 38 H 0.05 0.96 8.03 -51.93 -0.42 0.54 16 39 H 0.13 2.96 3.98 -51.93 -0.21 2.75 16 40 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 41 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 42 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 44 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.14 3.06 5.18 -52.48 -0.27 2.79 16 46 H 0.08 1.28 7.30 -51.93 -0.38 0.90 16 47 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 48 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 49 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -28.40 370.85 -10.83 -39.23 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -8.15 Total: 6.35 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -3.38 Total: -21.97 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.05 Total: -32.79 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.40 -10.83 -39.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355283014.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.225 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds