Wall clock time and date at job start Tue Mar 31 2020 10:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 108.45195 * 2 1 4 4 C 1.52561 * 108.51339 * 242.30626 * 2 1 3 5 5 C 1.50881 * 109.35526 * 153.88727 * 4 2 1 6 6 C 1.53949 * 110.09351 * 91.88690 * 5 4 2 7 7 N 1.47604 * 112.14302 * 319.43608 * 6 5 4 8 8 C 1.34774 * 118.63966 * 137.87236 * 7 6 5 9 9 O 1.21285 * 119.99921 * 180.02562 * 8 7 6 10 10 C 1.50696 * 120.00250 * 359.97438 * 8 7 6 11 11 C 1.53005 * 109.47453 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47210 * 305.00865 * 11 10 8 13 13 C 1.50703 * 109.46588 * 65.00365 * 11 10 8 14 14 H 1.07998 * 120.00176 * 234.68149 * 13 11 10 15 15 C 1.37879 * 120.00071 * 54.67817 * 13 11 10 16 16 N 1.31520 * 120.00073 * 4.92195 * 15 13 11 17 17 Si 1.86794 * 120.00023 * 184.91506 * 15 13 11 18 18 H 1.48504 * 109.47205 * 90.00491 * 17 15 13 19 19 H 1.48504 * 109.47324 * 210.00035 * 17 15 13 20 20 H 1.48500 * 109.47300 * 330.00338 * 17 15 13 21 21 C 1.50698 * 109.47496 * 185.00101 * 11 10 8 22 22 C 1.38233 * 119.99847 * 151.46531 * 21 11 10 23 23 C 1.38234 * 119.99856 * 179.77039 * 22 21 11 24 24 C 1.38242 * 120.00044 * 0.50594 * 23 22 21 25 25 C 1.38237 * 119.99725 * 359.74678 * 24 23 22 26 26 C 1.38235 * 120.00044 * 0.02562 * 25 24 23 27 27 C 1.44576 * 122.71313 * 318.14519 * 7 6 5 28 28 C 1.47094 * 108.38508 * 117.61643 * 2 1 3 29 29 H 1.08995 * 109.47266 * 177.68602 * 1 2 3 30 30 H 1.08997 * 109.46974 * 297.69769 * 1 2 3 31 31 H 1.09005 * 109.46502 * 57.69271 * 1 2 3 32 32 H 1.08999 * 109.49139 * 33.92291 * 4 2 1 33 33 H 1.09004 * 109.49381 * 273.85257 * 4 2 1 34 34 H 1.09001 * 109.36361 * 331.69676 * 5 4 2 35 35 H 1.09000 * 109.36970 * 212.07810 * 5 4 2 36 36 H 1.09000 * 108.94105 * 198.75055 * 6 5 4 37 37 H 1.08998 * 108.87641 * 80.07821 * 6 5 4 38 38 H 1.09006 * 109.46617 * 60.00567 * 10 8 7 39 39 H 1.08994 * 109.47674 * 300.00821 * 10 8 7 40 40 H 0.96997 * 120.00295 * 179.97438 * 16 15 13 41 41 H 1.07999 * 120.00328 * 359.97438 * 22 21 11 42 42 H 1.07998 * 120.00082 * 180.22661 * 23 22 21 43 43 H 1.07994 * 119.99997 * 179.72246 * 24 23 22 44 44 H 1.08000 * 119.99812 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.00037 * 179.97438 * 26 25 24 46 46 H 1.09007 * 109.44763 * 210.48418 * 27 7 6 47 47 H 1.08998 * 109.45205 * 330.40808 * 27 7 6 48 48 H 1.08996 * 109.33497 * 304.23215 * 28 2 1 49 49 H 1.09003 * 109.32837 * 63.88378 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8750 1.0339 0.0000 4 6 2.0145 -0.6723 -1.2809 5 6 3.3853 -0.1493 -1.6326 6 6 4.4698 -1.0490 -1.0125 7 7 4.1213 -1.4777 0.3562 8 6 4.3562 -2.7562 0.7122 9 8 4.0789 -3.1350 1.8306 10 6 4.9623 -3.7153 -0.2795 11 6 5.1234 -5.0898 0.3732 12 1 5.7023 -4.9904 1.2913 13 6 3.7641 -5.6553 0.6951 14 1 3.5355 -5.9718 1.7020 15 6 2.8122 -5.7686 -0.2959 16 7 3.1202 -5.4746 -1.5403 17 14 1.0852 -6.3399 0.1287 18 1 0.2419 -5.1632 0.4597 19 1 0.5010 -7.0563 -1.0335 20 1 1.1397 -7.2543 1.2975 21 6 5.8408 -6.0154 -0.5753 22 6 6.6120 -7.0502 -0.0802 23 6 7.2662 -7.9022 -0.9503 24 6 7.1576 -7.7129 -2.3154 25 6 6.3905 -6.6749 -2.8104 26 6 5.7325 -5.8258 -1.9403 27 6 3.5331 -0.5843 1.3289 28 6 1.9940 -0.6471 1.2368 29 1 -0.3633 -1.0268 -0.0415 30 1 -0.3633 0.4777 0.9099 31 1 -0.3632 0.5493 -0.8686 32 1 1.3215 -0.4507 -2.0925 33 1 2.0645 -1.7506 -1.1293 34 1 3.4945 0.8651 -1.2490 35 1 3.5010 -0.1383 -2.7164 36 1 5.4108 -0.4996 -0.9826 37 1 4.5958 -1.9322 -1.6388 38 1 5.9388 -3.3455 -0.5924 39 1 4.3102 -3.7996 -1.1487 40 1 2.4507 -5.5546 -2.2376 41 1 6.7009 -7.1951 0.9863 42 1 7.8659 -8.7129 -0.5636 43 1 7.6723 -8.3758 -2.9951 44 1 6.3059 -6.5268 -3.8768 45 1 5.1335 -5.0145 -2.3270 46 1 3.8446 -0.8819 2.3302 47 1 3.8662 0.4350 1.1336 48 1 1.5588 -0.1369 2.0961 49 1 1.6781 -1.6903 1.2386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355283014.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:38 Heat of formation + Delta-G solvation = -33.129084 kcal Electronic energy + Delta-G solvation = -28023.794763 eV Core-core repulsion = 24528.583031 eV Total energy + Delta-G solvation = -3495.211732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.27394 -39.86738 -38.69916 -36.08166 -35.54300 -33.51681 -32.92452 -31.42971 -30.58663 -29.36103 -27.62841 -26.98217 -25.07915 -23.98362 -23.05083 -22.46639 -21.34306 -20.98983 -19.43377 -18.27950 -17.90285 -17.27272 -16.97347 -16.83127 -16.30283 -15.56423 -15.47280 -15.42824 -15.09617 -15.06197 -14.66715 -14.27258 -14.10505 -13.86789 -13.76996 -13.40133 -13.32277 -13.26690 -13.12260 -12.88220 -12.76670 -12.73499 -12.53741 -12.22201 -12.19755 -11.89362 -11.78821 -11.68693 -11.43620 -11.34335 -11.26292 -11.06369 -10.99199 -10.56912 -10.19705 -9.40319 -9.36721 -9.11311 -7.95447 -6.10111 0.89397 1.00788 1.31172 1.34076 1.42153 2.04285 2.37303 2.42667 3.18913 3.38120 3.69012 3.85968 3.95678 4.06066 4.20110 4.26506 4.34155 4.41822 4.43584 4.51760 4.55557 4.65101 4.70859 4.73923 4.76967 4.79160 4.85116 4.90793 4.91625 4.98173 5.07960 5.09020 5.13799 5.15613 5.25700 5.30679 5.38340 5.41579 5.42474 5.54424 5.58045 5.64065 5.68084 5.89857 5.95144 6.01290 6.09971 6.36481 6.42904 6.58468 6.65126 6.83252 7.51187 7.63846 8.93547 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.005014 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.588716 B = 5583.412694 C = 6264.304558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.091 0.909 4 C -0.113 4.113 5 C -0.119 4.119 6 C 0.102 3.898 7 N -0.612 5.612 8 C 0.513 3.487 9 O -0.575 6.575 10 C -0.124 4.124 11 C 0.088 3.912 12 H 0.010 0.990 13 C -0.489 4.489 14 H 0.023 0.977 15 C 0.040 3.960 16 N -0.880 5.880 17 Si 0.922 3.078 18 H -0.289 1.289 19 H -0.275 1.275 20 H -0.285 1.285 21 C -0.050 4.050 22 C -0.154 4.154 23 C -0.140 4.140 24 C -0.148 4.148 25 C -0.145 4.145 26 C -0.080 4.080 27 C 0.120 3.880 28 C -0.125 4.125 29 H 0.027 0.973 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.125 0.875 40 H 0.261 0.739 41 H 0.100 0.900 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.054 0.946 47 H 0.104 0.896 48 H 0.081 0.919 49 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 12.372 -5.496 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.110 0.890 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.020 4.020 7 N -0.346 5.346 8 C 0.303 3.697 9 O -0.454 6.454 10 C -0.163 4.163 11 C 0.068 3.932 12 H 0.029 0.971 13 C -0.527 4.527 14 H 0.042 0.958 15 C -0.160 4.160 16 N -0.519 5.519 17 Si 0.751 3.249 18 H -0.216 1.216 19 H -0.201 1.201 20 H -0.211 1.211 21 C -0.050 4.050 22 C -0.172 4.172 23 C -0.158 4.158 24 C -0.166 4.166 25 C -0.164 4.164 26 C -0.098 4.098 27 C -0.003 4.003 28 C -0.164 4.164 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.149 0.851 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.073 0.927 47 H 0.122 0.878 48 H 0.100 0.900 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.279 12.201 -5.089 13.415 hybrid contribution -1.475 -0.981 0.790 1.940 sum 0.804 11.220 -4.299 12.042 Atomic orbital electron populations 1.21965 0.95518 1.00546 1.02469 1.20056 0.95873 1.00479 0.93819 0.89037 1.21119 0.97613 0.99029 0.97279 1.21720 0.92879 0.99379 1.01743 1.22178 0.98646 1.00015 0.81148 1.47836 1.62945 1.09812 1.14007 1.21258 0.77311 0.82705 0.88423 1.90570 1.53615 1.77054 1.24170 1.21754 1.00349 0.94156 1.00089 1.17539 0.93485 0.90518 0.91608 0.97143 1.20902 0.97303 1.40753 0.93767 0.95845 1.25127 0.99727 0.95912 0.95188 1.69743 1.33382 1.49528 0.99282 0.86118 0.83183 0.77986 0.77645 1.21605 1.20061 1.21091 1.20285 0.92724 0.96633 0.95382 1.21073 0.99899 0.97062 0.99146 1.21149 1.01122 0.99619 0.93869 1.21200 1.01088 0.99062 0.95271 1.21368 0.98601 0.96588 0.99800 1.21295 0.95500 1.00518 0.92482 1.21240 0.92420 0.94408 0.92265 1.21138 0.96590 0.99463 0.99185 0.95422 0.92013 0.91192 0.90937 0.95454 0.89474 0.88959 0.89939 0.90791 0.91303 0.85774 0.92905 0.88146 0.85062 0.84559 0.85447 0.85227 0.92743 0.87814 0.90038 0.96356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.88 71.98 0.64 -2.72 16 2 C -0.08 -1.99 2.16 -12.77 -0.03 -2.02 16 3 H 0.09 1.67 7.36 -2.39 -0.02 1.65 16 4 C -0.11 -2.89 4.93 29.76 0.15 -2.74 16 5 C -0.12 -2.39 5.71 30.23 0.17 -2.22 16 6 C 0.10 2.62 5.95 86.49 0.51 3.13 16 7 N -0.61 -20.78 2.25 -819.30 -1.84 -22.62 16 8 C 0.51 22.95 7.37 87.66 0.65 23.60 16 9 O -0.58 -30.77 14.41 -3.05 -0.04 -30.81 16 10 C -0.12 -5.51 2.40 29.85 0.07 -5.43 16 11 C 0.09 4.48 1.97 -12.28 -0.02 4.45 16 12 H 0.01 0.55 7.91 -2.39 -0.02 0.53 16 13 C -0.49 -28.03 7.27 25.60 0.19 -27.84 16 14 H 0.02 1.45 7.82 -2.91 -0.02 1.43 16 15 C 0.04 2.18 5.12 84.65 0.43 2.62 16 16 N -0.88 -45.25 7.99 21.45 0.17 -45.08 16 17 Si 0.92 45.73 29.54 68.60 2.03 47.76 16 18 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 21 C -0.05 -2.33 4.69 -19.87 -0.09 -2.43 16 22 C -0.15 -6.68 9.71 22.27 0.22 -6.47 16 23 C -0.14 -5.12 10.05 22.27 0.22 -4.89 16 24 C -0.15 -5.09 10.05 22.27 0.22 -4.87 16 25 C -0.15 -5.41 10.05 22.27 0.22 -5.19 16 26 C -0.08 -3.44 7.45 22.27 0.17 -3.28 16 27 C 0.12 3.57 5.34 87.18 0.47 4.03 16 28 C -0.13 -3.71 4.89 29.20 0.14 -3.57 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 1.25 8.07 -2.39 -0.02 1.23 16 31 H 0.07 1.31 8.08 -2.38 -0.02 1.30 16 32 H 0.07 1.64 7.81 -2.39 -0.02 1.62 16 33 H 0.03 0.96 7.48 -2.38 -0.02 0.94 16 34 H 0.09 1.35 7.32 -2.39 -0.02 1.33 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 2.14 5.82 -2.39 -0.01 2.13 16 38 H 0.07 2.71 8.03 -2.38 -0.02 2.70 16 39 H 0.12 5.77 3.98 -2.39 -0.01 5.76 16 40 H 0.26 13.00 8.31 -92.71 -0.77 12.23 16 41 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 42 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 43 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 44 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 45 H 0.13 5.77 5.18 -2.91 -0.02 5.75 16 46 H 0.05 1.87 7.30 -2.38 -0.02 1.85 16 47 H 0.10 2.24 8.06 -2.39 -0.02 2.22 16 48 H 0.08 2.09 8.06 -2.39 -0.02 2.07 16 49 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -66.92 370.85 5.55 -61.37 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.91 Total: 25.22 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 4.33 Total: -35.83 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -1.67 Total: -67.70 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.04 Total: -30.81 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -66.92 5.55 -61.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355283014.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.237 kcal (2) G-P(sol) polarization free energy of solvation -66.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds