Wall clock time and date at job start Tue Mar 31 2020 10:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 108.31141 * 2 1 4 4 C 1.52567 * 108.51519 * 242.37983 * 2 1 3 5 5 C 1.50882 * 109.35511 * 153.72545 * 4 2 1 6 6 C 1.53948 * 110.09373 * 91.89388 * 5 4 2 7 7 N 1.47604 * 112.14108 * 319.43107 * 6 5 4 8 8 C 1.34777 * 118.64270 * 137.86710 * 7 6 5 9 9 O 1.21279 * 120.00192 * 180.02562 * 8 7 6 10 10 C 1.50705 * 120.00121 * 0.02562 * 8 7 6 11 11 C 1.52997 * 109.47018 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47189 * 55.00469 * 11 10 8 13 13 C 1.50698 * 109.47172 * 295.00160 * 11 10 8 14 14 H 1.07995 * 119.99785 * 121.36805 * 13 11 10 15 15 C 1.37876 * 119.99912 * 301.36730 * 13 11 10 16 16 N 1.31514 * 119.99995 * 6.17958 * 15 13 11 17 17 Si 1.86796 * 119.99781 * 186.18082 * 15 13 11 18 18 H 1.48494 * 109.47487 * 60.00149 * 17 15 13 19 19 H 1.48504 * 109.47343 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47175 * 299.99573 * 17 15 13 21 21 C 1.50702 * 109.46848 * 174.99982 * 11 10 8 22 22 C 1.38230 * 120.00394 * 211.36981 * 21 11 10 23 23 C 1.38228 * 120.00446 * 179.81163 * 22 21 11 24 24 C 1.38237 * 119.99724 * 0.42169 * 23 22 21 25 25 C 1.38225 * 120.00208 * 359.81042 * 24 23 22 26 26 C 1.38236 * 120.00014 * 31.64645 * 21 11 10 27 27 C 1.44664 * 122.54556 * 317.86371 * 7 6 5 28 28 C 1.47097 * 108.51362 * 117.61347 * 2 1 3 29 29 H 1.08995 * 109.47187 * 302.38495 * 1 2 3 30 30 H 1.08994 * 109.47378 * 62.38775 * 1 2 3 31 31 H 1.09009 * 109.46637 * 182.38553 * 1 2 3 32 32 H 1.08994 * 109.49147 * 273.69333 * 4 2 1 33 33 H 1.09004 * 109.48692 * 33.74393 * 4 2 1 34 34 H 1.08998 * 109.36798 * 212.08449 * 5 4 2 35 35 H 1.09000 * 109.36829 * 331.70305 * 5 4 2 36 36 H 1.09002 * 108.94777 * 80.12212 * 6 5 4 37 37 H 1.08996 * 108.94625 * 198.75251 * 6 5 4 38 38 H 1.08997 * 109.46826 * 300.00521 * 10 8 7 39 39 H 1.09001 * 109.46748 * 59.99998 * 10 8 7 40 40 H 0.97006 * 119.99990 * 180.02562 * 16 15 13 41 41 H 1.08001 * 119.99636 * 0.02562 * 22 21 11 42 42 H 1.08001 * 120.00573 * 180.20747 * 23 22 21 43 43 H 1.08008 * 119.99976 * 179.79168 * 24 23 22 44 44 H 1.08002 * 120.00111 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.00296 * 359.97438 * 26 21 11 46 46 H 1.09001 * 109.61120 * 330.83514 * 27 7 6 47 47 H 1.08997 * 109.32152 * 210.89616 * 27 7 6 48 48 H 1.09003 * 109.32534 * 304.31437 * 28 2 1 49 49 H 1.08994 * 109.32818 * 63.96793 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8725 1.0348 0.0000 4 6 2.0145 -0.6707 -1.2818 5 6 3.3837 -0.1443 -1.6350 6 6 4.4710 -1.0417 -1.0167 7 7 4.1253 -1.4718 0.3523 8 6 4.3635 -2.7499 0.7075 9 8 4.0885 -3.1298 1.8260 10 6 4.9715 -3.7070 -0.2851 11 6 5.1362 -5.0814 0.3668 12 1 4.1756 -5.4147 0.7595 13 6 6.1338 -4.9871 1.4924 14 1 5.8420 -5.2572 2.4965 15 6 7.4190 -4.5562 1.2402 16 7 7.7411 -4.1124 0.0449 17 14 8.7026 -4.6028 2.5965 18 1 8.8785 -6.0012 3.0639 19 1 9.9945 -4.0902 2.0732 20 1 8.2558 -3.7543 3.7304 21 6 5.6289 -6.0684 -0.6599 22 6 5.2646 -7.3988 -0.5703 23 6 5.7133 -8.3035 -1.5142 24 6 6.5336 -7.8794 -2.5429 25 6 6.9019 -6.5499 -2.6298 26 6 6.4499 -5.6445 -1.6881 27 6 3.5414 -0.5749 1.3257 28 6 1.9971 -0.6465 1.2360 29 1 -0.3633 0.5504 0.8678 30 1 -0.3634 0.4763 -0.9106 31 1 -0.3633 -1.0269 0.0428 32 1 2.0672 -1.7488 -1.1306 33 1 1.3197 -0.4506 -2.0924 34 1 3.4979 -0.1325 -2.7189 35 1 3.4910 0.8702 -1.2511 36 1 4.5998 -1.9244 -1.6431 37 1 5.4107 -0.4902 -0.9876 38 1 4.3191 -3.7924 -1.1540 39 1 5.9469 -3.3346 -0.5983 40 1 8.6454 -3.8095 -0.1326 41 1 4.6265 -7.7308 0.2354 42 1 5.4259 -9.3424 -1.4460 43 1 6.8869 -8.5869 -3.2785 44 1 7.5430 -6.2186 -3.4333 45 1 6.7379 -4.6058 -1.7559 46 1 3.8697 0.4452 1.1264 47 1 3.8611 -0.8698 2.3252 48 1 1.5618 -0.1376 2.0960 49 1 1.6836 -1.6904 1.2377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355283030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:44 Heat of formation + Delta-G solvation = -20.483001 kcal Electronic energy + Delta-G solvation = -27708.166487 eV Core-core repulsion = 24213.503131 eV Total energy + Delta-G solvation = -3494.663357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.83847 -38.31819 -37.29591 -34.33819 -34.17279 -32.35514 -31.04686 -29.83584 -29.18776 -27.92478 -25.93570 -25.78527 -23.67708 -22.43270 -21.56240 -21.11011 -20.06976 -19.64640 -17.92565 -16.60319 -16.17965 -15.76320 -15.47544 -15.22028 -14.78449 -14.41222 -14.10944 -13.92549 -13.74871 -13.44622 -13.20602 -12.99302 -12.68280 -12.51821 -12.33544 -12.21055 -11.89901 -11.64396 -11.59062 -11.38710 -11.23097 -11.03646 -10.87835 -10.77147 -10.74874 -10.45006 -10.41420 -10.38780 -10.24103 -10.15798 -9.92915 -9.28483 -9.15920 -8.60002 -8.38385 -7.95342 -7.79442 -7.42932 -5.97270 -4.04521 2.49352 2.58132 3.35075 3.37066 3.43308 3.71536 3.76428 4.45323 4.66888 4.86527 4.90581 4.97754 5.17186 5.25852 5.26627 5.41113 5.43403 5.66773 5.73079 5.77038 5.80133 5.81320 5.86150 5.88830 5.93290 5.99666 6.02170 6.09897 6.15392 6.25330 6.30278 6.35237 6.40757 6.42249 6.48829 6.56632 6.65573 6.74401 6.79160 7.15165 7.17369 7.28332 7.36034 7.50729 7.56529 7.71360 7.98507 8.08502 8.20271 8.21525 8.38746 8.92325 9.28472 9.58586 10.97552 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.004685 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.311005 B = 5975.719871 C = 7020.880214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 H 0.061 0.939 4 C -0.110 4.110 5 C -0.131 4.131 6 C 0.112 3.888 7 N -0.621 5.621 8 C 0.523 3.477 9 O -0.528 6.528 10 C -0.139 4.139 11 C 0.087 3.913 12 H 0.035 0.965 13 C -0.469 4.469 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.279 1.279 21 C -0.030 4.030 22 C -0.132 4.132 23 C -0.143 4.143 24 C -0.154 4.154 25 C -0.144 4.144 26 C -0.076 4.076 27 C 0.121 3.879 28 C -0.129 4.129 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.137 0.863 40 H 0.261 0.739 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.148 0.852 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.064 0.936 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 7.749 -6.384 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 H 0.079 0.921 4 C -0.147 4.147 5 C -0.169 4.169 6 C -0.011 4.011 7 N -0.357 5.357 8 C 0.314 3.686 9 O -0.402 6.402 10 C -0.178 4.178 11 C 0.068 3.932 12 H 0.053 0.947 13 C -0.506 4.506 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.031 4.031 22 C -0.150 4.150 23 C -0.161 4.161 24 C -0.172 4.172 25 C -0.163 4.163 26 C -0.094 4.094 27 C -0.003 4.003 28 C -0.168 4.168 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.154 0.846 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.166 0.834 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.394 7.625 -5.833 12.752 hybrid contribution 0.991 -0.028 0.694 1.210 sum -7.403 7.597 -5.139 11.787 Atomic orbital electron populations 1.21984 0.95896 1.01680 1.01092 1.20066 0.95378 0.99697 0.95389 0.92063 1.21115 0.95927 1.01270 0.96437 1.21768 0.95201 0.99378 1.00563 1.21859 0.96518 0.99570 0.83197 1.47821 1.64501 1.11191 1.12185 1.21178 0.76358 0.81603 0.89459 1.90592 1.51044 1.76468 1.22120 1.22040 1.02871 0.97588 0.95346 1.17643 0.95642 0.88245 0.91640 0.94676 1.20961 0.94666 1.41359 0.93605 0.92285 1.24849 0.98283 0.95205 0.95505 1.69523 1.19568 1.43630 1.20385 0.86644 0.80572 0.78415 0.82401 1.20396 1.21400 1.20441 1.20376 0.94994 0.94290 0.93433 1.20925 1.01723 0.93787 0.98549 1.20799 1.00441 0.98250 0.96592 1.20779 1.01223 0.95908 0.99289 1.21084 1.01494 0.93828 0.99863 1.21618 0.94219 1.01535 0.92032 1.21206 0.91888 0.93209 0.93958 1.21253 0.96842 1.01727 0.96961 0.93093 0.93077 0.92809 0.91388 0.92248 0.91018 0.91992 0.89557 0.92467 0.93367 0.84576 0.92858 0.87677 0.88098 0.88313 0.88077 0.83439 0.91931 0.90348 0.91722 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.92 37.16 0.33 -1.14 16 2 C -0.09 -0.96 2.15 -93.68 -0.20 -1.17 16 3 H 0.06 0.64 7.35 -51.93 -0.38 0.26 16 4 C -0.11 -1.24 4.93 -28.02 -0.14 -1.38 16 5 C -0.13 -1.41 5.70 -27.30 -0.16 -1.57 16 6 C 0.11 1.55 5.95 -2.94 -0.02 1.53 16 7 N -0.62 -10.55 2.24 -172.47 -0.39 -10.93 16 8 C 0.52 11.21 7.37 -10.98 -0.08 11.13 16 9 O -0.53 -13.18 14.43 5.56 0.08 -13.10 16 10 C -0.14 -2.98 2.55 -27.88 -0.07 -3.05 16 11 C 0.09 2.12 1.98 -92.92 -0.18 1.93 16 12 H 0.03 0.87 7.89 -51.93 -0.41 0.46 16 13 C -0.47 -12.64 7.27 -34.44 -0.25 -12.89 16 14 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 15 C 0.06 1.60 5.14 -17.82 -0.09 1.51 16 16 N -0.89 -22.56 7.74 55.43 0.43 -22.13 16 17 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.03 -0.69 4.68 -104.62 -0.49 -1.18 16 22 C -0.13 -2.82 9.70 -39.59 -0.38 -3.20 16 23 C -0.14 -2.75 10.05 -39.59 -0.40 -3.15 16 24 C -0.15 -2.89 10.05 -39.59 -0.40 -3.29 16 25 C -0.14 -2.86 10.05 -39.59 -0.40 -3.26 16 26 C -0.08 -1.66 7.56 -39.58 -0.30 -1.96 16 27 C 0.12 1.84 5.38 -4.04 -0.02 1.82 16 28 C -0.13 -1.71 4.91 -28.58 -0.14 -1.85 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.45 7.96 -51.93 -0.41 0.04 16 31 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.07 0.92 7.48 -51.93 -0.39 0.53 16 33 H 0.06 0.59 7.73 -51.93 -0.40 0.19 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.62 7.32 -51.93 -0.38 0.24 16 36 H 0.09 1.23 5.82 -51.93 -0.30 0.93 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.93 7.41 -51.93 -0.38 0.55 16 39 H 0.14 3.10 4.53 -51.93 -0.24 2.86 16 40 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 41 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 44 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 45 H 0.15 3.32 4.97 -52.48 -0.26 3.06 16 46 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 47 H 0.08 1.37 7.31 -51.93 -0.38 0.99 16 48 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 370.61 15.07 5.58 5.58 Total: -1.00 -28.57 370.61 -10.83 -39.40 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.13 Total: 5.79 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -3.39 Total: -21.16 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.04 Total: -33.07 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.57 -10.83 -39.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355283030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.916 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds