Wall clock time and date at job start Tue Mar 31 2020 10:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 108.31141 * 2 1 4 4 C 1.52567 * 108.51519 * 242.37983 * 2 1 3 5 5 C 1.50882 * 109.35511 * 153.72545 * 4 2 1 6 6 C 1.53948 * 110.09373 * 91.89388 * 5 4 2 7 7 N 1.47604 * 112.14108 * 319.43107 * 6 5 4 8 8 C 1.34777 * 118.64270 * 137.86710 * 7 6 5 9 9 O 1.21279 * 120.00192 * 180.02562 * 8 7 6 10 10 C 1.50705 * 120.00121 * 0.02562 * 8 7 6 11 11 C 1.52997 * 109.47018 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47189 * 55.00469 * 11 10 8 13 13 C 1.50698 * 109.47172 * 295.00160 * 11 10 8 14 14 H 1.07995 * 119.99785 * 121.36805 * 13 11 10 15 15 C 1.37876 * 119.99912 * 301.36730 * 13 11 10 16 16 N 1.31514 * 119.99995 * 6.17958 * 15 13 11 17 17 Si 1.86796 * 119.99781 * 186.18082 * 15 13 11 18 18 H 1.48494 * 109.47487 * 60.00149 * 17 15 13 19 19 H 1.48504 * 109.47343 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47175 * 299.99573 * 17 15 13 21 21 C 1.50702 * 109.46848 * 174.99982 * 11 10 8 22 22 C 1.38230 * 120.00394 * 211.36981 * 21 11 10 23 23 C 1.38228 * 120.00446 * 179.81163 * 22 21 11 24 24 C 1.38237 * 119.99724 * 0.42169 * 23 22 21 25 25 C 1.38225 * 120.00208 * 359.81042 * 24 23 22 26 26 C 1.38236 * 120.00014 * 31.64645 * 21 11 10 27 27 C 1.44664 * 122.54556 * 317.86371 * 7 6 5 28 28 C 1.47097 * 108.51362 * 117.61347 * 2 1 3 29 29 H 1.08995 * 109.47187 * 302.38495 * 1 2 3 30 30 H 1.08994 * 109.47378 * 62.38775 * 1 2 3 31 31 H 1.09009 * 109.46637 * 182.38553 * 1 2 3 32 32 H 1.08994 * 109.49147 * 273.69333 * 4 2 1 33 33 H 1.09004 * 109.48692 * 33.74393 * 4 2 1 34 34 H 1.08998 * 109.36798 * 212.08449 * 5 4 2 35 35 H 1.09000 * 109.36829 * 331.70305 * 5 4 2 36 36 H 1.09002 * 108.94777 * 80.12212 * 6 5 4 37 37 H 1.08996 * 108.94625 * 198.75251 * 6 5 4 38 38 H 1.08997 * 109.46826 * 300.00521 * 10 8 7 39 39 H 1.09001 * 109.46748 * 59.99998 * 10 8 7 40 40 H 0.97006 * 119.99990 * 180.02562 * 16 15 13 41 41 H 1.08001 * 119.99636 * 0.02562 * 22 21 11 42 42 H 1.08001 * 120.00573 * 180.20747 * 23 22 21 43 43 H 1.08008 * 119.99976 * 179.79168 * 24 23 22 44 44 H 1.08002 * 120.00111 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.00296 * 359.97438 * 26 21 11 46 46 H 1.09001 * 109.61120 * 330.83514 * 27 7 6 47 47 H 1.08997 * 109.32152 * 210.89616 * 27 7 6 48 48 H 1.09003 * 109.32534 * 304.31437 * 28 2 1 49 49 H 1.08994 * 109.32818 * 63.96793 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8725 1.0348 0.0000 4 6 2.0145 -0.6707 -1.2818 5 6 3.3837 -0.1443 -1.6350 6 6 4.4710 -1.0417 -1.0167 7 7 4.1253 -1.4718 0.3523 8 6 4.3635 -2.7499 0.7075 9 8 4.0885 -3.1298 1.8260 10 6 4.9715 -3.7070 -0.2851 11 6 5.1362 -5.0814 0.3668 12 1 4.1756 -5.4147 0.7595 13 6 6.1338 -4.9871 1.4924 14 1 5.8420 -5.2572 2.4965 15 6 7.4190 -4.5562 1.2402 16 7 7.7411 -4.1124 0.0449 17 14 8.7026 -4.6028 2.5965 18 1 8.8785 -6.0012 3.0639 19 1 9.9945 -4.0902 2.0732 20 1 8.2558 -3.7543 3.7304 21 6 5.6289 -6.0684 -0.6599 22 6 5.2646 -7.3988 -0.5703 23 6 5.7133 -8.3035 -1.5142 24 6 6.5336 -7.8794 -2.5429 25 6 6.9019 -6.5499 -2.6298 26 6 6.4499 -5.6445 -1.6881 27 6 3.5414 -0.5749 1.3257 28 6 1.9971 -0.6465 1.2360 29 1 -0.3633 0.5504 0.8678 30 1 -0.3634 0.4763 -0.9106 31 1 -0.3633 -1.0269 0.0428 32 1 2.0672 -1.7488 -1.1306 33 1 1.3197 -0.4506 -2.0924 34 1 3.4979 -0.1325 -2.7189 35 1 3.4910 0.8702 -1.2511 36 1 4.5998 -1.9244 -1.6431 37 1 5.4107 -0.4902 -0.9876 38 1 4.3191 -3.7924 -1.1540 39 1 5.9469 -3.3346 -0.5983 40 1 8.6454 -3.8095 -0.1326 41 1 4.6265 -7.7308 0.2354 42 1 5.4259 -9.3424 -1.4460 43 1 6.8869 -8.5869 -3.2785 44 1 7.5430 -6.2186 -3.4333 45 1 6.7379 -4.6058 -1.7559 46 1 3.8697 0.4452 1.1264 47 1 3.8611 -0.8698 2.3252 48 1 1.5618 -0.1376 2.0960 49 1 1.6836 -1.6904 1.2377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355283030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:43 Heat of formation + Delta-G solvation = -32.508965 kcal Electronic energy + Delta-G solvation = -27708.687972 eV Core-core repulsion = 24213.503131 eV Total energy + Delta-G solvation = -3495.184842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25562 -39.88321 -38.68249 -36.07779 -35.52800 -33.50371 -32.91531 -31.43063 -30.58028 -29.34377 -27.63225 -26.95781 -25.05487 -23.96353 -23.05476 -22.46973 -21.36364 -20.95794 -19.43978 -18.26632 -17.93063 -17.14583 -16.98031 -16.90388 -16.33974 -15.58058 -15.43737 -15.34118 -15.22838 -14.86318 -14.72314 -14.24581 -14.08212 -13.85834 -13.78203 -13.45256 -13.39660 -13.16125 -13.11048 -12.82686 -12.71696 -12.69547 -12.48969 -12.23495 -12.12492 -11.90248 -11.82455 -11.71756 -11.40284 -11.33286 -11.23927 -11.07751 -11.02055 -10.48244 -10.23000 -9.41187 -9.36794 -9.11606 -7.96326 -6.09752 0.87125 0.98572 1.37381 1.37628 1.45266 2.07749 2.34547 2.44854 3.19420 3.35771 3.70251 3.87188 3.97537 4.05877 4.20536 4.27450 4.33569 4.40523 4.43481 4.51075 4.55168 4.66657 4.70865 4.77377 4.79962 4.80196 4.87070 4.92229 4.95422 5.01620 5.07792 5.10329 5.14446 5.16398 5.27899 5.33244 5.40195 5.43130 5.45449 5.52624 5.58310 5.64283 5.68226 5.91936 5.94674 6.01111 6.10465 6.38012 6.42103 6.57281 6.66028 6.84201 7.51855 7.64602 8.93832 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.004685 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.311005 B = 5975.719871 C = 7020.880214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.081 0.919 4 C -0.110 4.110 5 C -0.121 4.121 6 C 0.103 3.897 7 N -0.612 5.612 8 C 0.515 3.485 9 O -0.577 6.577 10 C -0.124 4.124 11 C 0.088 3.912 12 H 0.007 0.993 13 C -0.493 4.493 14 H 0.025 0.975 15 C 0.036 3.964 16 N -0.884 5.884 17 Si 0.930 3.070 18 H -0.282 1.282 19 H -0.273 1.273 20 H -0.290 1.290 21 C -0.054 4.054 22 C -0.153 4.153 23 C -0.140 4.140 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.088 4.088 27 C 0.117 3.883 28 C -0.119 4.119 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.129 0.871 40 H 0.263 0.737 41 H 0.101 0.899 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.138 0.862 46 H 0.094 0.906 47 H 0.046 0.954 48 H 0.079 0.921 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 8.860 -9.146 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.100 0.900 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.018 4.018 7 N -0.346 5.346 8 C 0.306 3.694 9 O -0.456 6.456 10 C -0.163 4.163 11 C 0.069 3.931 12 H 0.026 0.974 13 C -0.530 4.530 14 H 0.043 0.957 15 C -0.163 4.163 16 N -0.523 5.523 17 Si 0.757 3.243 18 H -0.208 1.208 19 H -0.198 1.198 20 H -0.216 1.216 21 C -0.055 4.055 22 C -0.171 4.171 23 C -0.158 4.158 24 C -0.165 4.165 25 C -0.165 4.165 26 C -0.106 4.106 27 C -0.007 4.007 28 C -0.157 4.157 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.146 0.854 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.150 0.850 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.155 0.845 46 H 0.112 0.888 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.046 8.776 -8.646 14.714 hybrid contribution 0.854 -0.403 1.521 1.791 sum -7.191 8.372 -7.125 13.137 Atomic orbital electron populations 1.21944 0.94796 1.01191 1.02371 1.20063 0.96327 1.00236 0.93901 0.90026 1.21129 0.96956 0.99385 0.97284 1.21742 0.93259 0.99080 1.01761 1.22128 0.98343 1.00114 0.81254 1.47822 1.63080 1.09855 1.13838 1.21246 0.76295 0.83181 0.88713 1.90563 1.53395 1.77776 1.23869 1.21813 1.02683 0.96260 0.95590 1.17532 0.93610 0.90187 0.91767 0.97442 1.20895 0.96105 1.43018 0.93024 0.95677 1.25195 0.98886 0.95134 0.97088 1.69610 1.19645 1.42800 1.20211 0.86067 0.79710 0.77813 0.80660 1.20848 1.19776 1.21647 1.20317 0.96479 0.94638 0.94048 1.21095 1.02509 0.93898 0.99576 1.21157 0.99620 0.99338 0.95665 1.21219 0.99807 0.96122 0.99362 1.21401 1.01235 0.94076 0.99757 1.21545 0.94749 1.01663 0.92671 1.21374 0.93315 0.94003 0.91995 1.21171 0.95207 1.00126 0.99225 0.92326 0.91342 0.94176 0.94414 0.90127 0.88625 0.90250 0.90321 0.91771 0.91735 0.85361 0.92663 0.88069 0.84968 0.84487 0.85420 0.84450 0.88761 0.93525 0.90264 0.94964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.92 71.98 0.64 -1.94 16 2 C -0.09 -1.75 2.15 -12.77 -0.03 -1.78 16 3 H 0.08 1.38 7.35 -2.39 -0.02 1.36 16 4 C -0.11 -2.27 4.93 29.76 0.15 -2.12 16 5 C -0.12 -2.24 5.70 30.23 0.17 -2.07 16 6 C 0.10 2.76 5.95 86.49 0.51 3.28 16 7 N -0.61 -21.25 2.24 -817.97 -1.83 -23.08 16 8 C 0.51 23.36 7.37 87.66 0.65 24.01 16 9 O -0.58 -31.19 14.43 -3.03 -0.04 -31.24 16 10 C -0.12 -5.57 2.55 29.85 0.08 -5.49 16 11 C 0.09 4.53 1.98 -12.29 -0.02 4.51 16 12 H 0.01 0.39 7.89 -2.38 -0.02 0.37 16 13 C -0.49 -28.18 7.27 25.60 0.19 -27.99 16 14 H 0.02 1.55 7.82 -2.91 -0.02 1.53 16 15 C 0.04 1.97 5.14 84.65 0.44 2.40 16 16 N -0.88 -45.14 7.74 21.45 0.17 -44.98 16 17 Si 0.93 45.05 29.54 68.60 2.03 47.07 16 18 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 21 C -0.05 -2.55 4.68 -19.87 -0.09 -2.65 16 22 C -0.15 -6.62 9.70 22.27 0.22 -6.40 16 23 C -0.14 -5.10 10.05 22.27 0.22 -4.87 16 24 C -0.15 -5.04 10.05 22.27 0.22 -4.81 16 25 C -0.15 -5.46 10.05 22.27 0.22 -5.24 16 26 C -0.09 -3.83 7.56 22.27 0.17 -3.66 16 27 C 0.12 3.57 5.38 87.36 0.47 4.04 16 28 C -0.12 -3.14 4.91 29.39 0.14 -3.00 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.99 7.96 -2.39 -0.02 0.97 16 31 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.04 1.01 7.48 -2.39 -0.02 1.00 16 33 H 0.08 1.35 7.73 -2.38 -0.02 1.33 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.26 7.32 -2.39 -0.02 1.24 16 36 H 0.08 2.22 5.82 -2.39 -0.01 2.20 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 2.61 7.41 -2.39 -0.02 2.59 16 39 H 0.13 6.01 4.53 -2.39 -0.01 6.00 16 40 H 0.26 12.97 8.31 -92.70 -0.77 12.20 16 41 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 42 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 43 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 44 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.14 6.20 4.97 -2.91 -0.01 6.18 16 46 H 0.09 2.28 8.06 -2.39 -0.02 2.26 16 47 H 0.05 1.72 7.31 -2.39 -0.02 1.71 16 48 H 0.08 1.85 8.11 -2.39 -0.02 1.83 16 49 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -65.87 370.61 5.57 -60.30 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.91 Total: 25.71 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 4.34 Total: -33.79 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -1.67 Total: -68.06 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.04 Total: -31.24 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -65.87 5.57 -60.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355283030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.790 kcal (2) G-P(sol) polarization free energy of solvation -65.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds