Wall clock time and date at job start Tue Mar 31 2020 11:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00349 * 2 1 4 4 C 1.53001 * 109.47396 * 270.00931 * 3 2 1 5 5 C 1.54270 * 110.02965 * 292.90291 * 4 3 2 6 6 C 1.54963 * 104.16065 * 217.13771 * 5 4 3 7 7 C 1.54893 * 102.77676 * 37.88762 * 6 5 4 8 8 C 1.53871 * 110.03158 * 175.69068 * 4 3 2 9 9 C 1.34777 * 120.00092 * 180.02562 * 2 1 3 10 10 O 1.21283 * 120.00046 * 179.97438 * 9 2 1 11 11 C 1.50698 * 119.99686 * 359.97438 * 9 2 1 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 2 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.08998 * 109.46580 * 270.00058 * 1 2 3 29 29 H 1.09007 * 109.46909 * 29.99033 * 1 2 3 30 30 H 1.08999 * 109.47455 * 149.99624 * 1 2 3 31 31 H 1.08999 * 109.46865 * 30.00646 * 3 2 1 32 32 H 1.08999 * 109.47437 * 150.00296 * 3 2 1 33 33 H 1.08990 * 110.01837 * 54.29225 * 4 3 2 34 34 H 1.09003 * 110.48261 * 335.78530 * 5 4 3 35 35 H 1.09003 * 110.48659 * 98.42865 * 5 4 3 36 36 H 1.08995 * 110.71880 * 279.57387 * 6 5 4 37 37 H 1.09000 * 110.92150 * 156.29614 * 6 5 4 38 38 H 1.08991 * 110.48664 * 203.40415 * 7 6 5 39 39 H 1.09005 * 110.59698 * 80.81906 * 7 6 5 40 40 H 1.09005 * 110.02847 * 238.56638 * 8 4 3 41 41 H 1.09005 * 110.03536 * 359.94312 * 8 4 3 42 42 H 1.09000 * 109.47229 * 60.00363 * 11 9 2 43 43 H 1.09003 * 109.47630 * 300.00294 * 11 9 2 44 44 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 45 45 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 46 46 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 47 47 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 48 48 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 49 49 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.4307 0.7350 -2.1289 6 6 4.3063 1.6452 -3.0268 7 6 4.4907 2.9117 -2.1542 8 6 3.1258 3.0940 -1.4588 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3854 -2.4723 -0.0005 12 6 2.3796 -3.6352 -0.0005 13 1 3.0745 -3.5191 -0.8321 14 6 3.1457 -3.6412 1.2972 15 1 2.7013 -3.2233 2.1885 16 6 4.4137 -4.1801 1.3467 17 7 4.9034 -4.8063 0.2991 18 14 5.4333 -4.0274 2.9045 19 1 6.7466 -4.6907 2.7035 20 1 5.6467 -2.5916 3.2177 21 1 4.7171 -4.6787 4.0306 22 6 1.6319 -4.9353 -0.1485 23 6 0.7743 -5.3570 0.8503 24 6 0.0851 -6.5474 0.7126 25 6 0.2605 -7.3206 -0.4198 26 6 1.1221 -6.9014 -1.4163 27 6 1.8079 -5.7088 -1.2805 28 1 -0.3632 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6086 2.0283 0.5139 32 1 3.1500 1.1384 0.5138 33 1 1.5127 1.7461 -1.9934 34 1 4.0458 0.2263 -1.3866 35 1 2.8855 0.0112 -2.7347 36 1 3.7866 1.8872 -3.9538 37 1 5.2680 1.1767 -3.2357 38 1 4.7191 3.7752 -2.7787 39 1 5.2775 2.7573 -1.4157 40 1 2.5131 3.8008 -2.0184 41 1 3.2702 3.4511 -0.4391 42 1 0.7584 -2.5298 -0.8903 43 1 0.7589 -2.5302 0.8897 44 1 4.3461 -4.9566 -0.4805 45 1 0.6404 -4.7549 1.7370 46 1 -0.5882 -6.8747 1.4910 47 1 -0.2758 -8.2519 -0.5262 48 1 1.2588 -7.5052 -2.3012 49 1 2.4809 -5.3813 -2.0590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355374873.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:56 Heat of formation + Delta-G solvation = -32.653374 kcal Electronic energy + Delta-G solvation = -27186.838360 eV Core-core repulsion = 23691.647256 eV Total energy + Delta-G solvation = -3495.191104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.68365 -38.50286 -37.59173 -34.97595 -34.18889 -31.41423 -30.38748 -30.10189 -28.75055 -28.45147 -26.47191 -25.51027 -23.91568 -22.65601 -21.64806 -20.52920 -20.06179 -19.48129 -18.53064 -16.85178 -16.57215 -15.95293 -15.71989 -15.51929 -14.94271 -14.65830 -14.18119 -14.02945 -13.63887 -13.37006 -13.20744 -13.05520 -12.87901 -12.59436 -12.36812 -12.30191 -12.19387 -11.84474 -11.78955 -11.39034 -11.13589 -11.01104 -10.92823 -10.83014 -10.70433 -10.65643 -10.45597 -10.41607 -10.29458 -10.09223 -10.02621 -9.64600 -8.91393 -8.58167 -8.27636 -8.13733 -8.12783 -7.62612 -6.20087 -3.88757 2.19518 2.25271 3.46390 3.47727 3.51482 3.56650 3.72353 4.61718 4.68521 4.70250 4.76927 4.83148 5.14408 5.25467 5.37907 5.45363 5.52877 5.59303 5.60063 5.62162 5.64663 5.68599 5.75004 5.77157 5.79123 5.79274 5.87270 5.98893 6.01433 6.03389 6.11533 6.14331 6.19891 6.25042 6.32479 6.38472 6.43452 6.48699 6.68720 6.77638 6.80929 6.92270 7.01659 7.21988 7.24010 7.39123 7.74477 7.86350 7.93724 8.25249 8.53897 8.98704 9.04638 9.79775 11.19272 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.004377 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.369789 B = 6396.267105 C = 7387.125679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.634 5.634 3 C 0.125 3.875 4 C -0.105 4.105 5 C -0.124 4.124 6 C -0.125 4.125 7 C -0.123 4.123 8 C -0.116 4.116 9 C 0.516 3.484 10 O -0.492 6.492 11 C -0.114 4.114 12 C 0.073 3.927 13 H 0.049 0.951 14 C -0.565 4.565 15 H 0.044 0.956 16 C 0.033 3.967 17 N -0.906 5.906 18 Si 1.059 2.941 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.291 1.291 22 C -0.032 4.032 23 C -0.107 4.107 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.271 0.729 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 10.710 -3.966 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.371 5.371 3 C 0.002 3.998 4 C -0.125 4.125 5 C -0.162 4.162 6 C -0.163 4.163 7 C -0.161 4.161 8 C -0.155 4.155 9 C 0.304 3.696 10 O -0.363 6.363 11 C -0.154 4.154 12 C 0.054 3.946 13 H 0.067 0.933 14 C -0.602 4.602 15 H 0.062 0.938 16 C -0.173 4.173 17 N -0.542 5.542 18 Si 0.888 3.112 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.218 1.218 22 C -0.033 4.033 23 C -0.125 4.125 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.149 4.149 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.770 10.357 -3.304 13.363 hybrid contribution -1.732 0.265 -0.570 1.843 sum -9.503 10.623 -3.874 14.770 Atomic orbital electron populations 1.21646 0.80650 1.02447 1.01165 1.48027 1.06231 1.06093 1.76781 1.21502 0.97814 0.84848 0.95678 1.22172 0.98789 0.94801 0.96757 1.22639 0.97503 0.96822 0.99201 1.22504 0.99964 0.95967 0.97862 1.22330 0.97289 0.97683 0.98762 1.22125 0.96359 0.96418 1.00552 1.20813 0.88519 0.84703 0.75553 1.90685 1.13585 1.86343 1.45717 1.21677 0.99155 0.93457 1.01118 1.17870 0.91508 0.85154 1.00073 0.93276 1.21506 1.02360 1.42493 0.93887 0.93800 1.25541 0.95922 0.93253 1.02565 1.70732 1.39729 1.38190 1.05502 0.83703 0.76384 0.76242 0.74851 1.20973 1.21524 1.21782 1.20864 0.92201 0.98877 0.91325 1.20925 0.96787 0.96111 0.98654 1.21015 1.00573 0.95737 0.97505 1.20822 1.01068 0.99802 0.95398 1.20964 0.97849 0.96796 0.98676 1.21072 1.00081 0.95459 0.98242 0.93288 0.91999 0.91172 0.91690 0.89908 0.91712 0.88513 0.92731 0.92357 0.91801 0.92262 0.91573 0.92207 0.91822 0.91876 0.90467 0.91809 0.86731 0.87473 0.87602 0.87478 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.24 59.85 0.61 1.57 16 2 N -0.63 -9.72 2.82 -181.57 -0.51 -10.23 16 3 C 0.12 1.73 4.70 -4.04 -0.02 1.71 16 4 C -0.11 -1.34 3.15 -89.50 -0.28 -1.63 16 5 C -0.12 -1.91 5.36 -25.03 -0.13 -2.04 16 6 C -0.13 -1.62 6.91 -24.70 -0.17 -1.79 16 7 C -0.12 -1.40 6.83 -25.07 -0.17 -1.57 16 8 C -0.12 -1.26 6.46 -25.62 -0.17 -1.42 16 9 C 0.52 10.23 6.84 -10.99 -0.08 10.16 16 10 O -0.49 -11.86 12.05 5.55 0.07 -11.80 16 11 C -0.11 -2.22 3.51 -27.88 -0.10 -2.32 16 12 C 0.07 1.74 1.23 -92.92 -0.11 1.63 16 13 H 0.05 1.33 6.59 -51.93 -0.34 0.99 16 14 C -0.56 -15.34 6.35 -34.44 -0.22 -15.56 16 15 H 0.04 1.20 7.82 -52.48 -0.41 0.79 16 16 C 0.03 0.94 5.45 -17.83 -0.10 0.85 16 17 N -0.91 -27.69 13.56 55.43 0.75 -26.94 16 18 Si 1.06 26.36 29.91 -169.99 -5.08 21.28 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.03 -0.71 4.53 -104.62 -0.47 -1.18 16 23 C -0.11 -2.19 8.90 -39.58 -0.35 -2.54 16 24 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 25 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 26 C -0.12 -2.30 10.05 -39.58 -0.40 -2.69 16 27 C -0.13 -2.73 9.18 -39.58 -0.36 -3.09 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 30 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 31 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.08 1.35 7.30 -51.93 -0.38 0.97 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.84 5.47 -51.93 -0.28 1.56 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 42 H 0.06 1.09 7.40 -51.93 -0.38 0.71 16 43 H 0.08 1.43 7.93 -51.93 -0.41 1.02 16 44 H 0.27 8.15 6.24 -40.82 -0.25 7.89 16 45 H 0.11 2.30 7.85 -52.48 -0.41 1.89 16 46 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 48 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.28 7.95 -52.49 -0.42 1.86 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -32.21 383.56 -10.63 -42.83 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -8.31 Total: 4.80 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -3.32 Total: -25.73 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.24 Total: -37.17 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.07 Total: -11.80 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -5.08 Total: 21.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.21 -10.63 -42.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355374873.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.179 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds