Wall clock time and date at job start Tue Mar 31 2020 11:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00349 * 2 1 4 4 C 1.53001 * 109.47396 * 270.00931 * 3 2 1 5 5 C 1.54270 * 110.02965 * 292.90291 * 4 3 2 6 6 C 1.54963 * 104.16065 * 217.13771 * 5 4 3 7 7 C 1.54893 * 102.77676 * 37.88762 * 6 5 4 8 8 C 1.53871 * 110.03158 * 175.69068 * 4 3 2 9 9 C 1.34777 * 120.00092 * 180.02562 * 2 1 3 10 10 O 1.21283 * 120.00046 * 179.97438 * 9 2 1 11 11 C 1.50698 * 119.99686 * 359.97438 * 9 2 1 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 2 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.08998 * 109.46580 * 270.00058 * 1 2 3 29 29 H 1.09007 * 109.46909 * 29.99033 * 1 2 3 30 30 H 1.08999 * 109.47455 * 149.99624 * 1 2 3 31 31 H 1.08999 * 109.46865 * 30.00646 * 3 2 1 32 32 H 1.08999 * 109.47437 * 150.00296 * 3 2 1 33 33 H 1.08990 * 110.01837 * 54.29225 * 4 3 2 34 34 H 1.09003 * 110.48261 * 335.78530 * 5 4 3 35 35 H 1.09003 * 110.48659 * 98.42865 * 5 4 3 36 36 H 1.08995 * 110.71880 * 279.57387 * 6 5 4 37 37 H 1.09000 * 110.92150 * 156.29614 * 6 5 4 38 38 H 1.08991 * 110.48664 * 203.40415 * 7 6 5 39 39 H 1.09005 * 110.59698 * 80.81906 * 7 6 5 40 40 H 1.09005 * 110.02847 * 238.56638 * 8 4 3 41 41 H 1.09005 * 110.03536 * 359.94312 * 8 4 3 42 42 H 1.09000 * 109.47229 * 60.00363 * 11 9 2 43 43 H 1.09003 * 109.47630 * 300.00294 * 11 9 2 44 44 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 45 45 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 46 46 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 47 47 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 48 48 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 49 49 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.4307 0.7350 -2.1289 6 6 4.3063 1.6452 -3.0268 7 6 4.4907 2.9117 -2.1542 8 6 3.1258 3.0940 -1.4588 9 6 2.1389 -1.1672 -0.0005 10 8 3.3517 -1.1672 -0.0010 11 6 1.3854 -2.4723 -0.0005 12 6 2.3796 -3.6352 -0.0005 13 1 3.0745 -3.5191 -0.8321 14 6 3.1457 -3.6412 1.2972 15 1 2.7013 -3.2233 2.1885 16 6 4.4137 -4.1801 1.3467 17 7 4.9034 -4.8063 0.2991 18 14 5.4333 -4.0274 2.9045 19 1 6.7466 -4.6907 2.7035 20 1 5.6467 -2.5916 3.2177 21 1 4.7171 -4.6787 4.0306 22 6 1.6319 -4.9353 -0.1485 23 6 0.7743 -5.3570 0.8503 24 6 0.0851 -6.5474 0.7126 25 6 0.2605 -7.3206 -0.4198 26 6 1.1221 -6.9014 -1.4163 27 6 1.8079 -5.7088 -1.2805 28 1 -0.3632 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6086 2.0283 0.5139 32 1 3.1500 1.1384 0.5138 33 1 1.5127 1.7461 -1.9934 34 1 4.0458 0.2263 -1.3866 35 1 2.8855 0.0112 -2.7347 36 1 3.7866 1.8872 -3.9538 37 1 5.2680 1.1767 -3.2357 38 1 4.7191 3.7752 -2.7787 39 1 5.2775 2.7573 -1.4157 40 1 2.5131 3.8008 -2.0184 41 1 3.2702 3.4511 -0.4391 42 1 0.7584 -2.5298 -0.8903 43 1 0.7589 -2.5302 0.8897 44 1 4.3461 -4.9566 -0.4805 45 1 0.6404 -4.7549 1.7370 46 1 -0.5882 -6.8747 1.4910 47 1 -0.2758 -8.2519 -0.5262 48 1 1.2588 -7.5052 -2.3012 49 1 2.4809 -5.3813 -2.0590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355374873.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:55 Heat of formation + Delta-G solvation = -48.936641 kcal Electronic energy + Delta-G solvation = -27187.544455 eV Core-core repulsion = 23691.647256 eV Total energy + Delta-G solvation = -3495.897199 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -41.10596 -39.99877 -38.81573 -36.39242 -35.95151 -33.33058 -31.65633 -31.57916 -30.16779 -29.53610 -27.54636 -27.23995 -25.53515 -24.23417 -23.18936 -21.72143 -21.53538 -20.61411 -19.96656 -18.74098 -18.08830 -17.32292 -17.07097 -16.81302 -16.15872 -16.08785 -15.68099 -15.65536 -15.39960 -14.78501 -14.46788 -14.27329 -14.21435 -14.04021 -13.99134 -13.70019 -13.44816 -13.30508 -13.17622 -12.88971 -12.65284 -12.59897 -12.11829 -12.08280 -11.98536 -11.96929 -11.92618 -11.79125 -11.72751 -11.55563 -11.48745 -11.28926 -10.68816 -10.51746 -10.28552 -9.65575 -9.42214 -9.27867 -8.44763 -6.11161 0.66389 0.72748 1.45787 1.56263 1.72084 1.93318 2.22871 2.60953 3.09602 3.35555 3.64418 3.74316 3.80437 3.94173 4.12331 4.26228 4.28070 4.30313 4.33940 4.42066 4.43639 4.47021 4.54235 4.58373 4.60844 4.70088 4.71997 4.79205 4.81083 4.84885 4.87551 4.91947 4.95079 5.04241 5.06370 5.11629 5.20895 5.22889 5.34106 5.39498 5.42295 5.47038 5.55132 5.73292 5.80039 5.82848 5.94320 6.23561 6.30050 6.39432 6.58075 6.77682 7.54893 7.63806 8.95308 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.004377 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.369789 B = 6396.267105 C = 7387.125679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.626 5.626 3 C 0.122 3.878 4 C -0.097 4.097 5 C -0.127 4.127 6 C -0.124 4.124 7 C -0.122 4.122 8 C -0.110 4.110 9 C 0.508 3.492 10 O -0.549 6.549 11 C -0.106 4.106 12 C 0.077 3.923 13 H 0.001 0.999 14 C -0.553 4.553 15 H 0.036 0.964 16 C -0.024 4.024 17 N -0.943 5.943 18 Si 1.095 2.905 19 H -0.289 1.289 20 H -0.287 1.287 21 H -0.266 1.266 22 C -0.055 4.055 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.153 4.153 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.260 0.740 45 H 0.112 0.888 46 H 0.143 0.857 47 H 0.148 0.852 48 H 0.135 0.865 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.341 11.549 -3.494 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.361 5.361 3 C 0.000 4.000 4 C -0.117 4.117 5 C -0.165 4.165 6 C -0.162 4.162 7 C -0.159 4.159 8 C -0.148 4.148 9 C 0.297 3.703 10 O -0.425 6.425 11 C -0.146 4.146 12 C 0.057 3.943 13 H 0.020 0.980 14 C -0.591 4.591 15 H 0.055 0.945 16 C -0.222 4.222 17 N -0.582 5.582 18 Si 0.920 3.080 19 H -0.214 1.214 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.056 4.056 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.162 4.162 26 C -0.143 4.143 27 C -0.172 4.172 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.130 0.870 46 H 0.161 0.839 47 H 0.165 0.835 48 H 0.153 0.847 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.225 11.230 -2.822 16.126 hybrid contribution -0.804 -0.002 -0.783 1.122 sum -12.029 11.228 -3.605 16.845 Atomic orbital electron populations 1.21961 0.77634 1.04275 1.02695 1.48026 1.08107 1.05237 1.74750 1.21648 0.96897 0.84816 0.96656 1.22127 0.98813 0.95136 0.95600 1.22534 0.98006 0.97380 0.98585 1.22509 0.98969 0.96232 0.98478 1.22337 0.97588 0.97477 0.98527 1.22120 0.95848 0.95325 1.01495 1.20912 0.87932 0.86131 0.75306 1.90679 1.15903 1.87280 1.48653 1.21540 0.98312 0.92054 1.02658 1.17670 0.91781 0.88213 0.96594 0.98034 1.21735 1.02390 1.40191 0.94762 0.94546 1.26691 0.97841 0.93424 1.04293 1.70814 1.40000 1.41152 1.06198 0.83228 0.75343 0.76364 0.73050 1.21445 1.21310 1.19147 1.20632 0.93852 0.98122 0.92958 1.20999 0.97382 0.97602 0.98079 1.21410 0.99889 0.94327 0.98555 1.21310 0.99911 1.00779 0.94166 1.21298 0.97101 0.95700 1.00162 1.21115 1.00996 0.97014 0.98060 0.91819 0.88693 0.90934 0.87881 0.93317 0.90021 0.92998 0.94814 0.90543 0.93192 0.89808 0.92963 0.89526 0.90962 0.89726 0.89126 0.92994 0.86953 0.83892 0.83474 0.84713 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.53 10.24 127.77 1.31 2.84 16 2 N -0.63 -18.94 2.82 -846.75 -2.39 -21.33 16 3 C 0.12 3.30 4.70 86.38 0.41 3.71 16 4 C -0.10 -2.37 3.15 -10.07 -0.03 -2.41 16 5 C -0.13 -4.15 5.36 31.70 0.17 -3.98 16 6 C -0.12 -3.27 6.91 31.91 0.22 -3.05 16 7 C -0.12 -2.64 6.83 31.67 0.22 -2.42 16 8 C -0.11 -2.10 6.46 31.32 0.20 -1.90 16 9 C 0.51 21.12 6.84 87.66 0.60 21.72 16 10 O -0.55 -28.71 12.05 -3.04 -0.04 -28.75 16 11 C -0.11 -4.26 3.51 29.85 0.10 -4.16 16 12 C 0.08 3.88 1.23 -12.28 -0.02 3.86 16 13 H 0.00 0.08 6.59 -2.39 -0.02 0.07 16 14 C -0.55 -31.45 6.35 25.60 0.16 -31.29 16 15 H 0.04 2.06 7.82 -2.91 -0.02 2.04 16 16 C -0.02 -1.46 5.45 84.65 0.46 -1.00 16 17 N -0.94 -61.19 13.56 21.44 0.29 -60.90 16 18 Si 1.10 55.05 29.91 68.60 2.05 57.11 16 19 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 C -0.06 -2.51 4.53 -19.87 -0.09 -2.60 16 23 C -0.12 -4.94 8.90 22.27 0.20 -4.74 16 24 C -0.12 -4.11 10.05 22.27 0.22 -3.88 16 25 C -0.14 -4.50 10.05 22.27 0.22 -4.27 16 26 C -0.12 -4.40 10.05 22.27 0.22 -4.17 16 27 C -0.15 -6.64 9.18 22.27 0.20 -6.43 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.32 8.07 -2.38 -0.02 1.30 16 30 H 0.07 1.44 6.44 -2.39 -0.02 1.42 16 31 H 0.10 2.01 8.07 -2.39 -0.02 1.99 16 32 H 0.05 1.67 7.30 -2.39 -0.02 1.65 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 2.19 5.47 -2.39 -0.01 2.18 16 35 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.07 1.28 7.67 -2.38 -0.02 1.26 16 42 H 0.08 2.98 7.40 -2.39 -0.02 2.96 16 43 H 0.09 3.36 7.93 -2.39 -0.02 3.35 16 44 H 0.26 16.88 6.24 -92.70 -0.58 16.30 16 45 H 0.11 4.47 7.85 -2.91 -0.02 4.45 16 46 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 47 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 48 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 49 H 0.09 4.20 7.95 -2.91 -0.02 4.18 16 Total: -1.00 -77.51 383.56 5.80 -71.71 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 1.09 Total: 26.34 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 4.79 Total: -44.18 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -2.10 Total: -82.23 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.04 Total: -28.75 kcal Atomic # 14 Polarization: 55.05 SS G_CDS: 2.05 Total: 57.11 kcal Total: -77.51 5.80 -71.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355374873.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.775 kcal (2) G-P(sol) polarization free energy of solvation -77.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds