Wall clock time and date at job start Tue Mar 31 2020 10:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.69829 * 2 1 4 4 C 1.52755 * 109.50909 * 239.87954 * 2 1 3 5 5 C 1.53042 * 109.38584 * 185.70589 * 4 2 1 6 6 C 1.53041 * 109.53462 * 61.23922 * 5 4 2 7 7 C 1.53187 * 109.31377 * 298.63784 * 6 5 4 8 8 H 1.09004 * 109.58977 * 294.84694 * 7 6 5 9 9 C 1.53005 * 109.70286 * 174.49614 * 7 6 5 10 10 N 1.46922 * 109.58437 * 120.35131 * 2 1 3 11 11 C 1.34774 * 120.63228 * 353.42168 * 10 2 1 12 12 O 1.21288 * 119.99715 * 175.87101 * 11 10 2 13 13 C 1.50698 * 120.00339 * 355.86504 * 11 10 2 14 14 C 1.52997 * 109.47569 * 170.62821 * 13 11 10 15 15 H 1.09000 * 109.47048 * 305.00732 * 14 13 11 16 16 C 1.50706 * 109.46425 * 65.00424 * 14 13 11 17 17 H 1.08000 * 119.99657 * 244.25625 * 16 14 13 18 18 C 1.37869 * 120.00323 * 64.26135 * 16 14 13 19 19 N 1.31518 * 119.99693 * 354.19301 * 18 16 14 20 20 Si 1.86798 * 120.00217 * 174.47415 * 18 16 14 21 21 H 1.48496 * 109.47025 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47255 * 120.00090 * 20 18 16 23 23 H 1.48500 * 109.47022 * 239.99527 * 20 18 16 24 24 C 1.50696 * 109.47203 * 185.00243 * 14 13 11 25 25 C 1.38233 * 120.00006 * 334.32238 * 24 14 13 26 26 C 1.38234 * 119.99897 * 179.79160 * 25 24 14 27 27 C 1.38233 * 120.00052 * 0.43593 * 26 25 24 28 28 C 1.38243 * 119.99801 * 359.82019 * 27 26 25 29 29 C 1.38227 * 120.00067 * 359.97309 * 28 27 26 30 30 H 1.09005 * 109.46937 * 293.27163 * 1 2 3 31 31 H 1.09000 * 109.46737 * 53.26608 * 1 2 3 32 32 H 1.09001 * 109.47178 * 173.26987 * 1 2 3 33 33 H 1.09009 * 109.56523 * 65.67259 * 4 2 1 34 34 H 1.09001 * 109.38894 * 305.63500 * 4 2 1 35 35 H 1.09006 * 109.45723 * 301.22198 * 5 4 2 36 36 H 1.08994 * 109.46374 * 181.26221 * 5 4 2 37 37 H 1.09001 * 109.49403 * 178.68583 * 6 5 4 38 38 H 1.08997 * 109.49719 * 58.59139 * 6 5 4 39 39 H 1.08999 * 109.46439 * 297.53150 * 9 7 6 40 40 H 1.08992 * 109.47301 * 57.53724 * 9 7 6 41 41 H 1.08999 * 109.47140 * 177.54004 * 9 7 6 42 42 H 1.09008 * 109.46617 * 50.63473 * 13 11 10 43 43 H 1.08999 * 109.47100 * 290.63867 * 13 11 10 44 44 H 0.97000 * 119.99872 * 180.02562 * 19 18 16 45 45 H 1.08004 * 120.00300 * 0.02562 * 25 24 14 46 46 H 1.07995 * 120.00024 * 180.27955 * 26 25 24 47 47 H 1.07998 * 120.00386 * 179.83665 * 27 26 25 48 48 H 1.08000 * 119.99488 * 179.97438 * 28 27 26 49 49 H 1.07999 * 120.00028 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2454 5 6 3.5639 -0.8462 -1.1726 6 6 3.9523 -1.6687 0.0582 7 6 3.4644 -0.9519 1.3211 8 1 3.9929 -0.0049 1.4310 9 6 3.7258 -1.8303 2.5463 10 7 2.0225 -0.6995 1.1945 11 6 1.1673 -1.1069 2.1532 12 8 1.5762 -1.7486 3.0977 13 6 -0.2969 -0.7650 2.0517 14 6 -1.0751 -1.5315 3.1230 15 1 -0.8701 -2.5978 3.0278 16 6 -0.6489 -1.0579 4.4887 17 1 -0.1536 -1.7380 5.1658 18 6 -0.8913 0.2436 4.8738 19 7 -1.3898 1.1024 4.0115 20 14 -0.5043 0.7891 6.6179 21 1 0.0494 -0.3565 7.3835 22 1 0.4923 1.8895 6.5828 23 1 -1.7474 1.2679 7.2741 24 6 -2.5511 -1.2857 2.9440 25 6 -2.9895 -0.1269 2.3310 26 6 -4.3432 0.0965 2.1630 27 6 -5.2589 -0.8347 2.6161 28 6 -4.8206 -1.9911 3.2339 29 6 -3.4668 -2.2165 3.3980 30 1 -0.3633 0.4060 0.9441 31 1 -0.3633 0.6147 -0.8236 32 1 -0.3633 -1.0206 -0.1204 33 1 1.7633 -0.1566 -2.1350 34 1 1.5964 -1.7169 -1.2942 35 1 4.0058 0.1475 -1.0996 36 1 3.9314 -1.3417 -2.0712 37 1 5.0363 -1.7761 0.0966 38 1 3.4905 -2.6541 -0.0022 39 1 3.1568 -2.7557 2.4578 40 1 4.7891 -2.0618 2.6072 41 1 3.4175 -1.2989 3.4467 42 1 -0.6673 -1.0430 1.0649 43 1 -0.4311 0.3063 2.2017 44 1 -1.5600 2.0182 4.2823 45 1 -2.2742 0.6022 1.9799 46 1 -4.6856 0.9997 1.6800 47 1 -6.3167 -0.6589 2.4872 48 1 -5.5361 -2.7184 3.5882 49 1 -3.1244 -3.1197 3.8811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355667710.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:43 Heat of formation + Delta-G solvation = 72.437169 kcal Electronic energy + Delta-G solvation = -28409.694672 eV Core-core repulsion = 24919.060637 eV Total energy + Delta-G solvation = -3490.634036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 4.16 seconds Orbital eigenvalues (eV) -40.42813 -38.26408 -36.82597 -35.26861 -33.50295 -32.30282 -30.98877 -29.88178 -28.99371 -28.32542 -26.75880 -25.17263 -23.34947 -21.96296 -21.47063 -21.23550 -20.65957 -19.45494 -18.58345 -16.40840 -16.16027 -15.68053 -15.34155 -14.85051 -14.67985 -14.10307 -14.00258 -13.87528 -13.74047 -13.60051 -13.29130 -13.05499 -12.54890 -12.35301 -12.28965 -11.99094 -11.75661 -11.68751 -11.56683 -11.42717 -11.35787 -10.92081 -10.89422 -10.80979 -10.64363 -10.62342 -10.42521 -10.27546 -9.97017 -9.81858 -9.50760 -9.11032 -8.77624 -8.24155 -7.92938 -7.90472 -7.74466 -7.40160 -5.91840 -3.97908 2.53004 2.61608 3.33463 3.41595 3.48067 3.59357 3.73752 4.49703 4.84844 4.89328 4.91881 5.00508 5.13926 5.31948 5.38466 5.43849 5.52825 5.65549 5.71718 5.80540 5.83963 5.90371 5.92774 5.96584 5.99338 6.03899 6.06501 6.14404 6.20685 6.24686 6.37080 6.43380 6.49542 6.58437 6.66090 6.71244 6.78049 6.84686 6.91246 7.16517 7.18375 7.24762 7.32136 7.47765 7.55826 7.70754 7.98886 8.09397 8.20123 8.27389 8.42283 8.98215 9.30290 9.63448 11.03360 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.005493 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.406581 B = 5095.948090 C = 6293.523148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.149 3.851 3 H 0.065 0.935 4 C -0.131 4.131 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.146 3.854 8 H 0.058 0.942 9 C -0.132 4.132 10 N -0.622 5.622 11 C 0.524 3.476 12 O -0.515 6.515 13 C -0.179 4.179 14 C 0.078 3.922 15 H 0.033 0.967 16 C -0.464 4.464 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.887 3.113 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.287 1.287 24 C -0.023 4.023 25 C -0.060 4.060 26 C -0.145 4.145 27 C -0.153 4.153 28 C -0.144 4.144 29 C -0.129 4.129 30 H 0.135 0.865 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.029 0.971 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.137 0.863 44 H 0.258 0.742 45 H 0.132 0.868 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.100 0.900 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 -1.103 -11.631 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C 0.045 3.955 3 H 0.083 0.917 4 C -0.170 4.170 5 C -0.156 4.156 6 C -0.169 4.169 7 C 0.042 3.958 8 H 0.076 0.924 9 C -0.189 4.189 10 N -0.360 5.360 11 C 0.315 3.685 12 O -0.390 6.390 13 C -0.217 4.217 14 C 0.059 3.941 15 H 0.051 0.949 16 C -0.502 4.502 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.716 3.284 21 H -0.199 1.199 22 H -0.214 1.214 23 H -0.213 1.213 24 C -0.024 4.024 25 C -0.079 4.079 26 C -0.164 4.164 27 C -0.171 4.171 28 C -0.162 4.162 29 C -0.148 4.148 30 H 0.152 0.848 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.153 0.847 44 H 0.069 0.931 45 H 0.150 0.850 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.118 0.882 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.374 -1.276 -11.064 11.966 hybrid contribution 0.190 0.650 1.041 1.242 sum 4.564 -0.626 -10.023 11.031 Atomic orbital electron populations 1.24297 0.94154 1.02214 1.07045 1.20900 0.95078 0.95065 0.84458 0.91720 1.21951 0.95797 1.01393 0.97815 1.21506 0.96062 1.00218 0.97795 1.22009 1.00494 0.99579 0.94807 1.21095 0.81614 0.97818 0.95270 0.92394 1.22195 0.97999 1.01131 0.97599 1.48443 1.06202 1.60115 1.21287 1.21128 0.88935 0.77830 0.80627 1.90663 1.77789 1.38408 1.32092 1.23971 0.90554 1.05350 1.01795 1.17825 0.86834 0.94667 0.94738 0.94896 1.21015 1.34388 0.95711 0.99071 0.92205 1.24850 0.95333 0.96729 0.97100 1.69710 1.45741 1.04197 1.33487 0.86584 0.77614 0.78470 0.85694 1.19928 1.21438 1.21313 1.20244 0.97028 0.92853 0.92254 1.21171 0.94196 0.95954 0.96548 1.21009 0.94348 0.98543 1.02457 1.20744 0.97978 0.95800 1.02592 1.20786 0.95499 0.97728 1.02182 1.20881 0.92712 0.99873 1.01295 0.84797 0.92877 0.90888 0.91260 0.91624 0.92108 0.92217 0.91553 0.91682 0.91252 0.95253 0.90340 0.87958 0.84679 0.93137 0.84987 0.88170 0.88403 0.88209 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.10 7.14 37.16 0.27 -2.83 16 2 C 0.15 2.05 3.47 -67.82 -0.24 1.82 16 3 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.48 5.34 -26.83 -0.14 -1.63 16 5 C -0.12 -1.25 5.89 -26.69 -0.16 -1.41 16 6 C -0.13 -1.59 5.38 -26.61 -0.14 -1.73 16 7 C 0.15 2.21 3.49 -67.60 -0.24 1.97 16 8 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 9 C -0.13 -2.23 7.60 37.16 0.28 -1.95 16 10 N -0.62 -10.47 2.98 -157.98 -0.47 -10.94 16 11 C 0.52 10.84 7.37 -10.99 -0.08 10.76 16 12 O -0.52 -12.20 10.23 5.55 0.06 -12.14 16 13 C -0.18 -3.65 1.74 -27.89 -0.05 -3.70 16 14 C 0.08 1.84 1.98 -92.92 -0.18 1.66 16 15 H 0.03 0.79 8.06 -51.93 -0.42 0.37 16 16 C -0.46 -12.34 7.03 -34.44 -0.24 -12.59 16 17 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 18 C 0.06 1.56 5.12 -17.82 -0.09 1.47 16 19 N -0.89 -22.69 8.15 55.43 0.45 -22.24 16 20 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 21 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C -0.02 -0.52 4.50 -104.63 -0.47 -0.99 16 25 C -0.06 -1.27 7.19 -39.58 -0.28 -1.56 16 26 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 27 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 28 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 29 C -0.13 -2.76 9.72 -39.59 -0.38 -3.14 16 30 H 0.13 2.24 3.07 -97.26 -0.30 1.94 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.04 6.23 -51.93 -0.32 0.71 16 33 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.29 6.85 -51.93 -0.36 0.94 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 1.57 6.64 -51.93 -0.35 1.22 16 42 H 0.10 1.84 3.49 -92.29 -0.32 1.51 16 43 H 0.14 2.98 3.45 -51.93 -0.18 2.80 16 44 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 45 H 0.13 2.81 5.04 -52.48 -0.26 2.55 16 46 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 47 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 48 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 49 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -28.00 357.94 -10.91 -38.91 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.97 Total: 7.83 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -3.35 Total: -23.50 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: -0.02 Total: -33.19 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.06 Total: -12.14 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.00 -10.91 -38.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355667710.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.348 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.16 seconds