Wall clock time and date at job start Tue Mar 31 2020 10:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.69829 * 2 1 4 4 C 1.52755 * 109.50909 * 239.87954 * 2 1 3 5 5 C 1.53042 * 109.38584 * 185.70589 * 4 2 1 6 6 C 1.53041 * 109.53462 * 61.23922 * 5 4 2 7 7 C 1.53187 * 109.31377 * 298.63784 * 6 5 4 8 8 H 1.09004 * 109.58977 * 294.84694 * 7 6 5 9 9 C 1.53005 * 109.70286 * 174.49614 * 7 6 5 10 10 N 1.46922 * 109.58437 * 120.35131 * 2 1 3 11 11 C 1.34774 * 120.63228 * 353.42168 * 10 2 1 12 12 O 1.21288 * 119.99715 * 175.87101 * 11 10 2 13 13 C 1.50698 * 120.00339 * 355.86504 * 11 10 2 14 14 C 1.52997 * 109.47569 * 170.62821 * 13 11 10 15 15 H 1.09000 * 109.47048 * 305.00732 * 14 13 11 16 16 C 1.50706 * 109.46425 * 65.00424 * 14 13 11 17 17 H 1.08000 * 119.99657 * 244.25625 * 16 14 13 18 18 C 1.37869 * 120.00323 * 64.26135 * 16 14 13 19 19 N 1.31518 * 119.99693 * 354.19301 * 18 16 14 20 20 Si 1.86798 * 120.00217 * 174.47415 * 18 16 14 21 21 H 1.48496 * 109.47025 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47255 * 120.00090 * 20 18 16 23 23 H 1.48500 * 109.47022 * 239.99527 * 20 18 16 24 24 C 1.50696 * 109.47203 * 185.00243 * 14 13 11 25 25 C 1.38233 * 120.00006 * 334.32238 * 24 14 13 26 26 C 1.38234 * 119.99897 * 179.79160 * 25 24 14 27 27 C 1.38233 * 120.00052 * 0.43593 * 26 25 24 28 28 C 1.38243 * 119.99801 * 359.82019 * 27 26 25 29 29 C 1.38227 * 120.00067 * 359.97309 * 28 27 26 30 30 H 1.09005 * 109.46937 * 293.27163 * 1 2 3 31 31 H 1.09000 * 109.46737 * 53.26608 * 1 2 3 32 32 H 1.09001 * 109.47178 * 173.26987 * 1 2 3 33 33 H 1.09009 * 109.56523 * 65.67259 * 4 2 1 34 34 H 1.09001 * 109.38894 * 305.63500 * 4 2 1 35 35 H 1.09006 * 109.45723 * 301.22198 * 5 4 2 36 36 H 1.08994 * 109.46374 * 181.26221 * 5 4 2 37 37 H 1.09001 * 109.49403 * 178.68583 * 6 5 4 38 38 H 1.08997 * 109.49719 * 58.59139 * 6 5 4 39 39 H 1.08999 * 109.46439 * 297.53150 * 9 7 6 40 40 H 1.08992 * 109.47301 * 57.53724 * 9 7 6 41 41 H 1.08999 * 109.47140 * 177.54004 * 9 7 6 42 42 H 1.09008 * 109.46617 * 50.63473 * 13 11 10 43 43 H 1.08999 * 109.47100 * 290.63867 * 13 11 10 44 44 H 0.97000 * 119.99872 * 180.02562 * 19 18 16 45 45 H 1.08004 * 120.00300 * 0.02562 * 25 24 14 46 46 H 1.07995 * 120.00024 * 180.27955 * 26 25 24 47 47 H 1.07998 * 120.00386 * 179.83665 * 27 26 25 48 48 H 1.08000 * 119.99488 * 179.97438 * 28 27 26 49 49 H 1.07999 * 120.00028 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2454 5 6 3.5639 -0.8462 -1.1726 6 6 3.9523 -1.6687 0.0582 7 6 3.4644 -0.9519 1.3211 8 1 3.9929 -0.0049 1.4310 9 6 3.7258 -1.8303 2.5463 10 7 2.0225 -0.6995 1.1945 11 6 1.1673 -1.1069 2.1532 12 8 1.5762 -1.7486 3.0977 13 6 -0.2969 -0.7650 2.0517 14 6 -1.0751 -1.5315 3.1230 15 1 -0.8701 -2.5978 3.0278 16 6 -0.6489 -1.0579 4.4887 17 1 -0.1536 -1.7380 5.1658 18 6 -0.8913 0.2436 4.8738 19 7 -1.3898 1.1024 4.0115 20 14 -0.5043 0.7891 6.6179 21 1 0.0494 -0.3565 7.3835 22 1 0.4923 1.8895 6.5828 23 1 -1.7474 1.2679 7.2741 24 6 -2.5511 -1.2857 2.9440 25 6 -2.9895 -0.1269 2.3310 26 6 -4.3432 0.0965 2.1630 27 6 -5.2589 -0.8347 2.6161 28 6 -4.8206 -1.9911 3.2339 29 6 -3.4668 -2.2165 3.3980 30 1 -0.3633 0.4060 0.9441 31 1 -0.3633 0.6147 -0.8236 32 1 -0.3633 -1.0206 -0.1204 33 1 1.7633 -0.1566 -2.1350 34 1 1.5964 -1.7169 -1.2942 35 1 4.0058 0.1475 -1.0996 36 1 3.9314 -1.3417 -2.0712 37 1 5.0363 -1.7761 0.0966 38 1 3.4905 -2.6541 -0.0022 39 1 3.1568 -2.7557 2.4578 40 1 4.7891 -2.0618 2.6072 41 1 3.4175 -1.2989 3.4467 42 1 -0.6673 -1.0430 1.0649 43 1 -0.4311 0.3063 2.2017 44 1 -1.5600 2.0182 4.2823 45 1 -2.2742 0.6022 1.9799 46 1 -4.6856 0.9997 1.6800 47 1 -6.3167 -0.6589 2.4872 48 1 -5.5361 -2.7184 3.5882 49 1 -3.1244 -3.1197 3.8811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355667710.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:40 Heat of formation + Delta-G solvation = 60.052626 kcal Electronic energy + Delta-G solvation = -28410.231706 eV Core-core repulsion = 24919.060637 eV Total energy + Delta-G solvation = -3491.171070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = -0.07 seconds Orbital eigenvalues (eV) -41.82568 -39.82759 -38.21723 -36.75578 -35.07102 -33.50491 -32.79556 -31.43721 -30.41555 -29.71231 -28.37029 -26.50996 -24.99390 -23.41378 -22.91846 -22.47377 -21.84788 -21.06802 -19.96579 -18.25525 -17.72454 -17.07257 -16.76347 -16.59323 -16.12732 -15.49683 -15.43439 -15.25512 -15.05877 -14.85921 -14.74156 -14.45142 -14.04299 -13.87152 -13.73168 -13.51576 -13.27056 -13.16051 -13.03671 -12.87587 -12.81060 -12.64874 -12.59065 -12.13482 -12.08401 -11.84608 -11.72201 -11.59144 -11.45995 -11.36985 -11.20374 -10.81640 -10.52086 -9.97191 -9.53082 -9.34799 -9.24041 -9.07507 -7.90463 -6.02000 0.92719 1.04289 1.33021 1.37052 1.46663 2.14216 2.29050 2.47022 3.25061 3.40467 3.77634 3.90201 3.92954 4.04132 4.24620 4.33139 4.35566 4.38011 4.43681 4.47666 4.55934 4.59088 4.69757 4.78241 4.79614 4.84958 4.91075 4.96305 5.03831 5.09398 5.11636 5.15363 5.19586 5.20811 5.28192 5.29765 5.41064 5.50134 5.51865 5.55134 5.57986 5.65080 5.74173 5.92181 5.97807 5.98870 6.12827 6.42057 6.47674 6.61740 6.80250 6.90137 7.57102 7.74613 8.98741 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.005493 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.406581 B = 5095.948090 C = 6293.523148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.141 3.859 3 H 0.076 0.924 4 C -0.126 4.126 5 C -0.114 4.114 6 C -0.123 4.123 7 C 0.138 3.862 8 H 0.069 0.931 9 C -0.122 4.122 10 N -0.619 5.619 11 C 0.512 3.488 12 O -0.559 6.559 13 C -0.163 4.163 14 C 0.078 3.922 15 H 0.006 0.994 16 C -0.481 4.481 17 H 0.022 0.978 18 C 0.033 3.967 19 N -0.884 5.884 20 Si 0.923 3.077 21 H -0.289 1.289 22 H -0.284 1.284 23 H -0.281 1.281 24 C -0.045 4.045 25 C -0.068 4.068 26 C -0.148 4.148 27 C -0.148 4.148 28 C -0.143 4.143 29 C -0.152 4.152 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.259 0.741 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.134 0.866 48 H 0.128 0.872 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 0.321 -14.490 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C 0.038 3.962 3 H 0.094 0.906 4 C -0.164 4.164 5 C -0.152 4.152 6 C -0.161 4.161 7 C 0.035 3.965 8 H 0.087 0.913 9 C -0.179 4.179 10 N -0.356 5.356 11 C 0.303 3.697 12 O -0.437 6.437 13 C -0.201 4.201 14 C 0.059 3.941 15 H 0.025 0.975 16 C -0.519 4.519 17 H 0.041 0.959 18 C -0.166 4.166 19 N -0.524 5.524 20 Si 0.752 3.248 21 H -0.215 1.215 22 H -0.211 1.211 23 H -0.207 1.207 24 C -0.046 4.046 25 C -0.087 4.087 26 C -0.166 4.166 27 C -0.166 4.166 28 C -0.161 4.161 29 C -0.170 4.170 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.069 0.931 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.152 0.848 48 H 0.146 0.854 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.746 0.176 -13.970 14.465 hybrid contribution 0.371 0.182 1.914 1.958 sum 4.117 0.358 -12.057 12.745 Atomic orbital electron populations 1.24003 0.94432 1.02099 1.06628 1.21215 0.94989 0.95715 0.84261 0.90607 1.21924 0.96375 1.00928 0.97137 1.21515 0.95390 1.00694 0.97576 1.21948 1.01621 0.98730 0.93815 1.21296 0.80771 0.98297 0.96107 0.91342 1.21971 0.99098 0.99820 0.97034 1.48495 1.06648 1.59148 1.21297 1.21302 0.89645 0.77827 0.80927 1.90662 1.78515 1.40529 1.34029 1.23993 0.90336 1.03909 1.01845 1.17758 0.88635 0.93389 0.94323 0.97547 1.20931 1.35084 0.95643 1.00226 0.95937 1.25161 0.95749 0.96760 0.98897 1.69789 1.45347 1.03897 1.33338 0.86047 0.77501 0.77564 0.83681 1.21490 1.21071 1.20708 1.20195 0.96211 0.94165 0.94025 1.21160 0.95299 0.95329 0.96896 1.21344 0.93559 0.99698 1.02002 1.21171 0.99754 0.94793 1.00879 1.21117 0.94848 0.98707 1.01466 1.21045 0.94037 0.99866 1.02055 0.87697 0.89769 0.91401 0.88443 0.92498 0.90991 0.89899 0.89355 0.92954 0.93793 0.92434 0.94348 0.85377 0.85862 0.93144 0.85450 0.85481 0.84797 0.85375 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.72 7.14 71.98 0.51 -5.21 16 2 C 0.14 3.62 3.47 44.83 0.16 3.78 16 3 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.13 -2.43 5.34 30.53 0.16 -2.27 16 5 C -0.11 -1.98 5.89 30.62 0.18 -1.80 16 6 C -0.12 -2.72 5.38 30.67 0.16 -2.55 16 7 C 0.14 4.13 3.49 44.97 0.16 4.29 16 8 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 9 C -0.12 -4.31 7.60 71.98 0.55 -3.76 16 10 N -0.62 -20.96 2.98 -772.12 -2.30 -23.26 16 11 C 0.51 22.33 7.37 87.66 0.65 22.97 16 12 O -0.56 -28.70 10.23 -3.05 -0.03 -28.73 16 13 C -0.16 -6.94 1.74 29.85 0.05 -6.89 16 14 C 0.08 3.89 1.98 -12.29 -0.02 3.87 16 15 H 0.01 0.32 8.06 -2.39 -0.02 0.31 16 16 C -0.48 -27.25 7.03 25.60 0.18 -27.07 16 17 H 0.02 1.39 7.82 -2.91 -0.02 1.37 16 18 C 0.03 1.82 5.12 84.65 0.43 2.25 16 19 N -0.88 -45.66 8.15 21.44 0.17 -45.48 16 20 Si 0.92 45.78 29.54 68.60 2.03 47.81 16 21 H -0.29 -14.91 7.11 99.48 0.71 -14.21 16 22 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 24 C -0.05 -2.09 4.50 -19.87 -0.09 -2.18 16 25 C -0.07 -2.87 7.19 22.27 0.16 -2.71 16 26 C -0.15 -5.41 10.05 22.27 0.22 -5.18 16 27 C -0.15 -5.07 10.05 22.27 0.22 -4.85 16 28 C -0.14 -5.26 10.05 22.27 0.22 -5.04 16 29 C -0.15 -6.57 9.72 22.27 0.22 -6.36 16 30 H 0.11 3.49 3.07 -44.97 -0.14 3.35 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.87 6.23 -2.39 -0.01 1.85 16 33 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.04 1.75 6.85 -2.39 -0.02 1.73 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.04 1.64 6.64 -2.39 -0.02 1.62 16 42 H 0.13 4.72 3.49 -40.30 -0.14 4.58 16 43 H 0.12 5.61 3.45 -2.39 -0.01 5.60 16 44 H 0.26 13.00 8.31 -92.71 -0.77 12.23 16 45 H 0.13 5.42 5.04 -2.91 -0.01 5.40 16 46 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 47 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 48 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 49 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -65.01 357.94 4.67 -60.34 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.67 Total: 28.05 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 4.13 Total: -38.72 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -2.12 Total: -68.74 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.03 Total: -28.73 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -65.01 4.67 -60.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355667710.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.390 kcal (2) G-P(sol) polarization free energy of solvation -65.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.07 seconds