Wall clock time and date at job start Tue Mar 31 2020 10:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.70255 * 2 1 4 4 C 1.52766 * 109.51133 * 239.88397 * 2 1 3 5 5 C 1.53037 * 109.38054 * 185.70857 * 4 2 1 6 6 C 1.53037 * 109.54331 * 61.23514 * 5 4 2 7 7 C 1.53193 * 109.31305 * 298.63620 * 6 5 4 8 8 H 1.08991 * 109.58380 * 294.84271 * 7 6 5 9 9 C 1.53003 * 109.70100 * 174.48709 * 7 6 5 10 10 N 1.46924 * 109.58412 * 120.35477 * 2 1 3 11 11 C 1.34774 * 120.63223 * 353.42081 * 10 2 1 12 12 O 1.21283 * 120.00104 * 157.63836 * 11 10 2 13 13 C 1.50700 * 119.99898 * 337.63742 * 11 10 2 14 14 C 1.52999 * 109.47404 * 192.64679 * 13 11 10 15 15 H 1.09002 * 109.47161 * 54.99319 * 14 13 11 16 16 C 1.50705 * 109.47038 * 295.00411 * 14 13 11 17 17 H 1.08005 * 119.99593 * 334.35296 * 16 14 13 18 18 C 1.37869 * 120.00186 * 154.35535 * 16 14 13 19 19 N 1.31510 * 120.00432 * 5.02122 * 18 16 14 20 20 Si 1.86805 * 120.00179 * 185.01625 * 18 16 14 21 21 H 1.48498 * 109.46848 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.46952 * 120.00056 * 20 18 16 23 23 H 1.48493 * 109.47282 * 240.00401 * 20 18 16 24 24 C 1.50696 * 109.47741 * 175.00143 * 14 13 11 25 25 C 1.38232 * 119.99709 * 56.09170 * 24 14 13 26 26 C 1.38240 * 119.99998 * 180.26382 * 25 24 14 27 27 C 1.38233 * 119.99707 * 359.50585 * 26 25 24 28 28 C 1.38235 * 120.00104 * 0.28779 * 27 26 25 29 29 C 1.38231 * 120.00326 * 235.88997 * 24 14 13 30 30 H 1.08998 * 109.47248 * 309.15474 * 1 2 3 31 31 H 1.09007 * 109.46822 * 69.15218 * 1 2 3 32 32 H 1.09000 * 109.47131 * 189.14778 * 1 2 3 33 33 H 1.09001 * 109.56150 * 65.67015 * 4 2 1 34 34 H 1.08999 * 109.38487 * 305.63362 * 4 2 1 35 35 H 1.09007 * 109.45787 * 301.21414 * 5 4 2 36 36 H 1.09006 * 109.45796 * 181.25865 * 5 4 2 37 37 H 1.08997 * 109.50032 * 178.68044 * 6 5 4 38 38 H 1.09002 * 109.49281 * 58.58899 * 6 5 4 39 39 H 1.08998 * 109.47169 * 302.06787 * 9 7 6 40 40 H 1.08998 * 109.46976 * 62.07138 * 9 7 6 41 41 H 1.08998 * 109.47011 * 182.06935 * 9 7 6 42 42 H 1.09003 * 109.47170 * 72.64407 * 13 11 10 43 43 H 1.09000 * 109.47206 * 312.64679 * 13 11 10 44 44 H 0.97003 * 120.00758 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.00757 * 0.04774 * 25 24 14 46 46 H 1.08002 * 120.00411 * 179.78882 * 26 25 24 47 47 H 1.08002 * 120.00419 * 180.25692 * 27 26 25 48 48 H 1.07999 * 120.00018 * 179.97438 * 28 27 26 49 49 H 1.08002 * 119.99636 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2456 5 6 3.5639 -0.8461 -1.1726 6 6 3.9523 -1.6685 0.0582 7 6 3.4644 -0.9518 1.3211 8 1 3.9928 -0.0049 1.4310 9 6 3.7257 -1.8302 2.5463 10 7 2.0225 -0.6995 1.1945 11 6 1.1673 -1.1070 2.1531 12 8 1.4827 -2.0042 2.9058 13 6 -0.1809 -0.4477 2.2899 14 6 -0.8181 -0.8603 3.6183 15 1 -0.1358 -0.6283 4.4361 16 6 -1.0980 -2.3410 3.6027 17 1 -1.2488 -2.8521 2.6632 18 6 -1.1618 -3.0431 4.7875 19 7 -1.0769 -2.4060 5.9348 20 14 -1.3689 -4.8995 4.7632 21 1 -1.4380 -5.3714 3.3569 22 1 -0.2114 -5.5355 5.4419 23 1 -2.6212 -5.2672 5.4713 24 6 -2.1088 -0.1070 3.8119 25 6 -3.1020 -0.1799 2.8531 26 6 -4.2839 0.5154 3.0281 27 6 -4.4767 1.2754 4.1666 28 6 -3.4852 1.3448 5.1273 29 6 -2.3014 0.6534 4.9501 30 1 -0.3633 0.6489 0.7969 31 1 -0.3633 0.3658 -0.9605 32 1 -0.3633 -1.0146 0.1634 33 1 1.7633 -0.1565 -2.1350 34 1 1.5964 -1.7168 -1.2943 35 1 4.0057 0.1477 -1.0995 36 1 3.9314 -1.3416 -2.0712 37 1 5.0363 -1.7760 0.0967 38 1 3.4906 -2.6540 -0.0023 39 1 3.2213 -2.7883 2.4207 40 1 4.7978 -1.9952 2.6531 41 1 3.3441 -1.3329 3.4380 42 1 -0.8232 -0.7598 1.4664 43 1 -0.0599 0.6353 2.2659 44 1 -1.1221 -2.8999 6.7685 45 1 -2.9533 -0.7772 1.9657 46 1 -5.0585 0.4613 2.2774 47 1 -5.4017 1.8153 4.3053 48 1 -3.6357 1.9388 6.0166 49 1 -1.5269 0.7073 5.7008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355667714.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:03 Heat of formation + Delta-G solvation = 27.319654 kcal Electronic energy + Delta-G solvation = -27978.488260 eV Core-core repulsion = 24485.897782 eV Total energy + Delta-G solvation = -3492.590478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.37846 -38.32349 -36.94955 -34.93532 -33.44259 -32.43169 -31.30016 -29.94106 -29.01930 -28.52756 -26.54460 -25.29522 -23.48822 -22.10090 -21.57467 -21.32387 -20.78612 -19.46751 -18.53755 -16.73284 -15.94081 -15.80601 -15.56922 -14.98983 -14.52865 -14.18542 -14.10438 -14.02396 -13.88422 -13.57760 -13.47600 -13.06731 -12.57904 -12.46205 -12.41849 -12.02255 -11.88466 -11.70831 -11.57425 -11.53626 -11.46212 -11.30949 -10.84727 -10.82604 -10.76230 -10.62482 -10.47377 -10.29769 -10.18755 -10.02826 -9.96637 -9.20498 -8.81780 -8.45854 -8.21622 -7.97869 -7.93152 -7.51112 -5.88352 -3.85637 2.36083 2.42558 3.40286 3.45051 3.47876 3.49007 3.51109 4.56688 4.75655 4.79205 4.83036 4.86691 5.06380 5.24845 5.33423 5.40452 5.47221 5.54761 5.62078 5.71609 5.72071 5.77641 5.81279 5.87896 5.90302 5.91373 5.99633 6.05457 6.11682 6.13286 6.15328 6.28595 6.33220 6.35945 6.38069 6.48565 6.55154 6.61607 6.80846 6.87955 6.99454 7.09954 7.21721 7.38078 7.48300 7.61252 7.92437 8.01486 8.06469 8.14835 8.42796 9.09958 9.12869 9.74099 11.21296 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011899 B = 0.005352 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.623857 B = 5230.813248 C = 6658.130198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.150 3.850 3 H 0.065 0.935 4 C -0.131 4.131 5 C -0.117 4.117 6 C -0.132 4.132 7 C 0.150 3.850 8 H 0.060 0.940 9 C -0.142 4.142 10 N -0.634 5.634 11 C 0.518 3.482 12 O -0.479 6.479 13 C -0.148 4.148 14 C 0.078 3.922 15 H 0.058 0.942 16 C -0.475 4.475 17 H 0.050 0.950 18 C 0.072 3.928 19 N -0.886 5.886 20 Si 0.887 3.113 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.289 1.289 24 C -0.016 4.016 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.157 4.157 28 C -0.129 4.129 29 C -0.109 4.109 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.257 0.743 45 H 0.110 0.890 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 7.820 -12.489 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.046 3.954 3 H 0.083 0.917 4 C -0.169 4.169 5 C -0.155 4.155 6 C -0.170 4.170 7 C 0.046 3.954 8 H 0.078 0.922 9 C -0.199 4.199 10 N -0.374 5.374 11 C 0.307 3.693 12 O -0.350 6.350 13 C -0.187 4.187 14 C 0.059 3.941 15 H 0.076 0.924 16 C -0.513 4.513 17 H 0.069 0.931 18 C -0.130 4.130 19 N -0.524 5.524 20 Si 0.716 3.284 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.216 1.216 24 C -0.017 4.017 25 C -0.139 4.139 26 C -0.151 4.151 27 C -0.175 4.175 28 C -0.147 4.147 29 C -0.127 4.127 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.128 0.872 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.223 7.258 -11.828 14.828 hybrid contribution -0.179 -1.100 0.065 1.116 sum 5.044 6.158 -11.763 14.203 Atomic orbital electron populations 1.23351 0.94271 1.04001 1.03303 1.20863 0.94636 0.95139 0.84773 0.91735 1.21916 0.95986 1.01541 0.97455 1.21494 0.95881 1.00192 0.97920 1.22012 1.00553 0.99770 0.94679 1.21059 0.81213 0.97673 0.95417 0.92209 1.22209 0.98897 1.01965 0.96811 1.48380 1.06305 1.61299 1.21408 1.20832 0.86392 0.82732 0.79322 1.90767 1.74914 1.25924 1.43393 1.23091 0.94260 0.98091 1.03294 1.17898 0.89472 0.94664 0.92084 0.92422 1.20684 1.47466 0.90872 0.92241 0.93143 1.24797 0.94861 0.97640 0.95701 1.69927 1.50374 1.35045 0.97032 0.86622 0.77144 0.86800 0.77852 1.20035 1.21186 1.21566 1.20663 0.98362 0.90567 0.92125 1.20893 0.93625 0.99406 0.99969 1.20930 0.97446 0.99025 0.97656 1.20769 0.98746 1.02277 0.95741 1.20986 0.94665 1.00665 0.98416 1.21051 0.97164 0.96679 0.97793 0.88694 0.92248 0.90608 0.91234 0.91497 0.92109 0.92154 0.91522 0.91476 0.90088 0.94422 0.91449 0.87549 0.91603 0.93342 0.87184 0.87808 0.87958 0.87799 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 7.08 37.16 0.26 -2.07 16 2 C 0.15 1.83 3.43 -67.82 -0.23 1.60 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.13 -1.38 5.33 -26.83 -0.14 -1.52 16 5 C -0.12 -1.17 5.88 -26.69 -0.16 -1.32 16 6 C -0.13 -1.55 5.38 -26.61 -0.14 -1.70 16 7 C 0.15 2.13 3.49 -67.60 -0.24 1.89 16 8 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 9 C -0.14 -2.34 7.64 37.16 0.28 -2.05 16 10 N -0.63 -9.87 2.98 -157.98 -0.47 -10.34 16 11 C 0.52 10.20 6.66 -10.99 -0.07 10.12 16 12 O -0.48 -11.42 10.69 5.55 0.06 -11.36 16 13 C -0.15 -2.81 2.46 -27.88 -0.07 -2.88 16 14 C 0.08 1.84 1.58 -92.92 -0.15 1.69 16 15 H 0.06 1.57 7.40 -51.93 -0.38 1.18 16 16 C -0.47 -12.72 6.29 -34.44 -0.22 -12.93 16 17 H 0.05 1.37 7.82 -52.48 -0.41 0.96 16 18 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 19 N -0.89 -25.86 13.00 55.43 0.72 -25.14 16 20 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 C -0.02 -0.36 4.77 -104.63 -0.50 -0.86 16 25 C -0.12 -2.41 8.93 -39.58 -0.35 -2.77 16 26 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 27 C -0.16 -2.78 10.05 -39.58 -0.40 -3.18 16 28 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 29 C -0.11 -2.35 9.67 -39.59 -0.38 -2.74 16 30 H 0.09 1.22 4.59 -51.93 -0.24 0.98 16 31 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 32 H 0.08 1.06 6.00 -51.93 -0.31 0.75 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.55 6.68 -51.93 -0.35 1.20 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 1.29 6.90 -51.93 -0.36 0.93 16 42 H 0.11 1.87 3.67 -51.93 -0.19 1.68 16 43 H 0.07 1.12 6.68 -51.93 -0.35 0.78 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.11 2.07 7.42 -52.49 -0.39 1.68 16 46 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 48 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 49 H 0.11 2.56 7.95 -52.49 -0.42 2.14 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -30.77 370.71 -10.55 -41.32 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -8.02 Total: 4.82 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -3.40 Total: -22.41 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.25 Total: -35.48 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.06 Total: -11.36 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.77 -10.55 -41.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355667714.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.636 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds