Wall clock time and date at job start Tue Mar 31 2020 10:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.70255 * 2 1 4 4 C 1.52766 * 109.51133 * 239.88397 * 2 1 3 5 5 C 1.53037 * 109.38054 * 185.70857 * 4 2 1 6 6 C 1.53037 * 109.54331 * 61.23514 * 5 4 2 7 7 C 1.53193 * 109.31305 * 298.63620 * 6 5 4 8 8 H 1.08991 * 109.58380 * 294.84271 * 7 6 5 9 9 C 1.53003 * 109.70100 * 174.48709 * 7 6 5 10 10 N 1.46924 * 109.58412 * 120.35477 * 2 1 3 11 11 C 1.34774 * 120.63223 * 353.42081 * 10 2 1 12 12 O 1.21283 * 120.00104 * 157.63836 * 11 10 2 13 13 C 1.50700 * 119.99898 * 337.63742 * 11 10 2 14 14 C 1.52999 * 109.47404 * 192.64679 * 13 11 10 15 15 H 1.09002 * 109.47161 * 54.99319 * 14 13 11 16 16 C 1.50705 * 109.47038 * 295.00411 * 14 13 11 17 17 H 1.08005 * 119.99593 * 334.35296 * 16 14 13 18 18 C 1.37869 * 120.00186 * 154.35535 * 16 14 13 19 19 N 1.31510 * 120.00432 * 5.02122 * 18 16 14 20 20 Si 1.86805 * 120.00179 * 185.01625 * 18 16 14 21 21 H 1.48498 * 109.46848 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.46952 * 120.00056 * 20 18 16 23 23 H 1.48493 * 109.47282 * 240.00401 * 20 18 16 24 24 C 1.50696 * 109.47741 * 175.00143 * 14 13 11 25 25 C 1.38232 * 119.99709 * 56.09170 * 24 14 13 26 26 C 1.38240 * 119.99998 * 180.26382 * 25 24 14 27 27 C 1.38233 * 119.99707 * 359.50585 * 26 25 24 28 28 C 1.38235 * 120.00104 * 0.28779 * 27 26 25 29 29 C 1.38231 * 120.00326 * 235.88997 * 24 14 13 30 30 H 1.08998 * 109.47248 * 309.15474 * 1 2 3 31 31 H 1.09007 * 109.46822 * 69.15218 * 1 2 3 32 32 H 1.09000 * 109.47131 * 189.14778 * 1 2 3 33 33 H 1.09001 * 109.56150 * 65.67015 * 4 2 1 34 34 H 1.08999 * 109.38487 * 305.63362 * 4 2 1 35 35 H 1.09007 * 109.45787 * 301.21414 * 5 4 2 36 36 H 1.09006 * 109.45796 * 181.25865 * 5 4 2 37 37 H 1.08997 * 109.50032 * 178.68044 * 6 5 4 38 38 H 1.09002 * 109.49281 * 58.58899 * 6 5 4 39 39 H 1.08998 * 109.47169 * 302.06787 * 9 7 6 40 40 H 1.08998 * 109.46976 * 62.07138 * 9 7 6 41 41 H 1.08998 * 109.47011 * 182.06935 * 9 7 6 42 42 H 1.09003 * 109.47170 * 72.64407 * 13 11 10 43 43 H 1.09000 * 109.47206 * 312.64679 * 13 11 10 44 44 H 0.97003 * 120.00758 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.00757 * 0.04774 * 25 24 14 46 46 H 1.08002 * 120.00411 * 179.78882 * 26 25 24 47 47 H 1.08002 * 120.00419 * 180.25692 * 27 26 25 48 48 H 1.07999 * 120.00018 * 179.97438 * 28 27 26 49 49 H 1.08002 * 119.99636 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7225 -1.2456 5 6 3.5639 -0.8461 -1.1726 6 6 3.9523 -1.6685 0.0582 7 6 3.4644 -0.9518 1.3211 8 1 3.9928 -0.0049 1.4310 9 6 3.7257 -1.8302 2.5463 10 7 2.0225 -0.6995 1.1945 11 6 1.1673 -1.1070 2.1531 12 8 1.4827 -2.0042 2.9058 13 6 -0.1809 -0.4477 2.2899 14 6 -0.8181 -0.8603 3.6183 15 1 -0.1358 -0.6283 4.4361 16 6 -1.0980 -2.3410 3.6027 17 1 -1.2488 -2.8521 2.6632 18 6 -1.1618 -3.0431 4.7875 19 7 -1.0769 -2.4060 5.9348 20 14 -1.3689 -4.8995 4.7632 21 1 -1.4380 -5.3714 3.3569 22 1 -0.2114 -5.5355 5.4419 23 1 -2.6212 -5.2672 5.4713 24 6 -2.1088 -0.1070 3.8119 25 6 -3.1020 -0.1799 2.8531 26 6 -4.2839 0.5154 3.0281 27 6 -4.4767 1.2754 4.1666 28 6 -3.4852 1.3448 5.1273 29 6 -2.3014 0.6534 4.9501 30 1 -0.3633 0.6489 0.7969 31 1 -0.3633 0.3658 -0.9605 32 1 -0.3633 -1.0146 0.1634 33 1 1.7633 -0.1565 -2.1350 34 1 1.5964 -1.7168 -1.2943 35 1 4.0057 0.1477 -1.0995 36 1 3.9314 -1.3416 -2.0712 37 1 5.0363 -1.7760 0.0967 38 1 3.4906 -2.6540 -0.0023 39 1 3.2213 -2.7883 2.4207 40 1 4.7978 -1.9952 2.6531 41 1 3.3441 -1.3329 3.4380 42 1 -0.8232 -0.7598 1.4664 43 1 -0.0599 0.6353 2.2659 44 1 -1.1221 -2.8999 6.7685 45 1 -2.9533 -0.7772 1.9657 46 1 -5.0585 0.4613 2.2774 47 1 -5.4017 1.8153 4.3053 48 1 -3.6357 1.9388 6.0166 49 1 -1.5269 0.7073 5.7008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355667714.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:02 Heat of formation + Delta-G solvation = 11.636651 kcal Electronic energy + Delta-G solvation = -27979.168326 eV Core-core repulsion = 24485.897782 eV Total energy + Delta-G solvation = -3493.270544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.70346 -39.85410 -38.28705 -36.36965 -35.02009 -33.58082 -33.16256 -31.46669 -30.41986 -29.77943 -28.09061 -26.70469 -25.11363 -23.47301 -23.06280 -22.44320 -21.86215 -21.08864 -19.86048 -18.60284 -17.39999 -17.25593 -16.90621 -16.45729 -16.32910 -15.63303 -15.52432 -15.19183 -14.94984 -14.84436 -14.79070 -14.67249 -13.98764 -13.89289 -13.76826 -13.44850 -13.39258 -13.30379 -13.14797 -12.88653 -12.84343 -12.72786 -12.57320 -12.34586 -12.04973 -11.84499 -11.73040 -11.65053 -11.59949 -11.48298 -11.41197 -10.97501 -10.50626 -10.48090 -9.85680 -9.49981 -9.24710 -9.12058 -8.02261 -6.02592 0.81912 0.88897 1.32416 1.36486 1.44202 1.95674 2.23565 2.46134 3.22105 3.37427 3.72707 3.87761 3.91188 4.05008 4.19404 4.24495 4.33215 4.35209 4.37995 4.43495 4.46026 4.55970 4.58812 4.66774 4.74614 4.77974 4.80254 4.91383 4.94934 4.96536 5.02528 5.04804 5.10294 5.16233 5.24187 5.26597 5.29707 5.34750 5.42185 5.44758 5.55075 5.56593 5.65861 5.81427 5.87098 5.97118 6.00496 6.22800 6.43214 6.49734 6.74543 7.00801 7.57226 7.64389 9.06320 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011899 B = 0.005352 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.623857 B = 5230.813248 C = 6658.130198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.126 4.126 7 C 0.144 3.856 8 H 0.082 0.918 9 C -0.132 4.132 10 N -0.629 5.629 11 C 0.512 3.488 12 O -0.537 6.537 13 C -0.137 4.137 14 C 0.082 3.918 15 H 0.006 0.994 16 C -0.465 4.465 17 H 0.042 0.958 18 C 0.018 3.982 19 N -0.918 5.918 20 Si 0.933 3.067 21 H -0.270 1.270 22 H -0.294 1.294 23 H -0.282 1.282 24 C -0.040 4.040 25 C -0.129 4.129 26 C -0.125 4.125 27 C -0.149 4.149 28 C -0.131 4.131 29 C -0.135 4.135 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.126 0.874 43 H 0.086 0.914 44 H 0.252 0.748 45 H 0.117 0.883 46 H 0.142 0.858 47 H 0.142 0.858 48 H 0.127 0.873 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.056 9.790 -15.931 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.039 3.961 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.150 4.150 6 C -0.165 4.165 7 C 0.042 3.958 8 H 0.100 0.900 9 C -0.190 4.190 10 N -0.368 5.368 11 C 0.301 3.699 12 O -0.412 6.412 13 C -0.176 4.176 14 C 0.063 3.937 15 H 0.024 0.976 16 C -0.503 4.503 17 H 0.060 0.940 18 C -0.180 4.180 19 N -0.558 5.558 20 Si 0.761 3.239 21 H -0.195 1.195 22 H -0.221 1.221 23 H -0.208 1.208 24 C -0.040 4.040 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.167 4.167 28 C -0.149 4.149 29 C -0.153 4.153 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.143 0.857 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.135 0.865 46 H 0.160 0.840 47 H 0.160 0.840 48 H 0.145 0.855 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.223 9.255 -15.332 18.400 hybrid contribution 0.151 -1.608 1.076 1.941 sum 4.374 7.646 -14.255 16.757 Atomic orbital electron populations 1.23218 0.94268 1.02361 1.04851 1.21241 0.94819 0.96170 0.83889 0.89364 1.21916 0.96399 1.00744 0.97442 1.21502 0.95388 1.00863 0.97276 1.21962 1.01561 0.98615 0.94314 1.21253 0.80629 0.98429 0.95537 0.89969 1.22011 0.99800 1.00385 0.96760 1.48425 1.06546 1.60376 1.21413 1.21012 0.87038 0.82267 0.79545 1.90761 1.76165 1.28477 1.45779 1.23103 0.94205 0.99140 1.01150 1.17697 0.89908 0.93370 0.92744 0.97563 1.20921 1.45200 0.92814 0.91352 0.94008 1.25434 0.95868 1.00789 0.95880 1.70061 1.52789 1.35807 0.97192 0.85888 0.76819 0.83339 0.77849 1.19465 1.22068 1.20837 1.20483 0.98100 0.91986 0.93457 1.21015 0.94003 1.00053 0.99682 1.21348 0.97130 0.97361 0.98456 1.21234 0.99436 1.01375 0.94638 1.21257 0.93771 1.00103 0.99807 1.21006 0.98190 0.98677 0.97461 0.89578 0.88906 0.93020 0.88129 0.93351 0.90305 0.90334 0.89440 0.93779 0.93494 0.91789 0.95134 0.85688 0.89603 0.93946 0.86450 0.83993 0.84004 0.85514 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.21 7.08 71.98 0.51 -3.70 16 2 C 0.14 3.10 3.43 44.83 0.15 3.25 16 3 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 4 C -0.13 -2.25 5.33 30.53 0.16 -2.09 16 5 C -0.11 -1.82 5.88 30.62 0.18 -1.64 16 6 C -0.13 -2.75 5.38 30.67 0.16 -2.59 16 7 C 0.14 4.01 3.49 44.98 0.16 4.17 16 8 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 9 C -0.13 -4.61 7.64 71.98 0.55 -4.06 16 10 N -0.63 -19.51 2.98 -772.11 -2.30 -21.81 16 11 C 0.51 21.15 6.66 87.66 0.58 21.74 16 12 O -0.54 -27.68 10.69 -3.04 -0.03 -27.72 16 13 C -0.14 -5.37 2.46 29.85 0.07 -5.30 16 14 C 0.08 4.10 1.58 -12.29 -0.02 4.08 16 15 H 0.01 0.36 7.40 -2.39 -0.02 0.34 16 16 C -0.46 -26.17 6.29 25.60 0.16 -26.01 16 17 H 0.04 2.36 7.82 -2.91 -0.02 2.34 16 18 C 0.02 1.07 5.45 84.65 0.46 1.53 16 19 N -0.92 -57.04 13.00 21.44 0.28 -56.76 16 20 Si 0.93 48.24 29.54 68.60 2.03 50.27 16 21 H -0.27 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.29 -15.44 7.11 99.48 0.71 -14.73 16 23 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 24 C -0.04 -1.80 4.77 -19.87 -0.09 -1.90 16 25 C -0.13 -5.03 8.93 22.27 0.20 -4.83 16 26 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 27 C -0.15 -4.75 10.05 22.27 0.22 -4.53 16 28 C -0.13 -4.83 10.05 22.27 0.22 -4.60 16 29 C -0.13 -6.06 9.67 22.27 0.22 -5.84 16 30 H 0.09 2.05 4.59 -2.39 -0.01 2.04 16 31 H 0.09 1.45 8.12 -2.38 -0.02 1.43 16 32 H 0.05 1.40 6.00 -2.39 -0.01 1.39 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 39 H 0.05 1.94 6.68 -2.39 -0.02 1.92 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.03 1.25 6.90 -2.39 -0.02 1.24 16 42 H 0.13 4.44 3.67 -2.39 -0.01 4.43 16 43 H 0.09 2.97 6.68 -2.39 -0.02 2.96 16 44 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 45 H 0.12 4.28 7.42 -2.91 -0.02 4.26 16 46 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 47 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 48 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 49 H 0.09 4.25 7.95 -2.91 -0.02 4.22 16 Total: -1.00 -74.04 370.71 5.02 -69.02 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.92 Total: 23.15 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: 4.13 Total: -36.15 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -2.02 Total: -78.57 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.03 Total: -27.72 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -74.04 5.02 -69.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355667714.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.655 kcal (2) G-P(sol) polarization free energy of solvation -74.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds