Wall clock time and date at job start Tue Mar 31 2020 10:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.88099 * 2 1 4 4 C 1.55132 * 110.90474 * 124.09264 * 2 1 3 5 5 N 1.47428 * 104.71893 * 155.27616 * 4 2 1 6 6 C 1.34772 * 125.64691 * 155.81609 * 5 4 2 7 7 O 1.21281 * 120.00189 * 179.69142 * 6 5 4 8 8 C 1.50706 * 119.99930 * 359.69294 * 6 5 4 9 9 C 1.52998 * 109.47057 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47085 * 54.99997 * 9 8 6 11 11 C 1.50698 * 109.47188 * 295.00200 * 9 8 6 12 12 H 1.08001 * 120.00205 * 334.71652 * 11 9 8 13 13 C 1.37875 * 120.00449 * 154.72459 * 11 9 8 14 14 N 1.31514 * 120.00717 * 184.85457 * 13 11 9 15 15 Si 1.86805 * 119.99666 * 4.85060 * 13 11 9 16 16 H 1.48498 * 109.47064 * 84.63920 * 15 13 11 17 17 H 1.48504 * 109.47032 * 204.63890 * 15 13 11 18 18 H 1.48500 * 109.47268 * 324.63551 * 15 13 11 19 19 C 1.50694 * 109.47345 * 175.00061 * 9 8 6 20 20 C 1.38235 * 120.00031 * 55.27342 * 19 9 8 21 21 C 1.38235 * 120.00119 * 179.81076 * 20 19 9 22 22 C 1.38237 * 119.99905 * 0.40113 * 21 20 19 23 23 C 1.38234 * 119.99989 * 359.85321 * 22 21 20 24 24 C 1.38237 * 119.99950 * 235.55179 * 19 9 8 25 25 C 1.47020 * 108.70093 * 335.55441 * 5 4 2 26 26 C 1.53000 * 109.88466 * 120.70603 * 25 5 4 27 27 C 1.53005 * 109.87821 * 241.86707 * 25 5 4 28 28 C 1.54323 * 107.27601 * 1.28404 * 25 5 4 29 29 H 1.09003 * 109.46888 * 183.88515 * 1 2 3 30 30 H 1.08999 * 109.46762 * 303.88113 * 1 2 3 31 31 H 1.08991 * 109.47106 * 63.88133 * 1 2 3 32 32 H 1.09001 * 110.49839 * 36.43574 * 4 2 1 33 33 H 1.08995 * 110.34220 * 274.03794 * 4 2 1 34 34 H 1.08996 * 109.47099 * 60.00045 * 8 6 5 35 35 H 1.08995 * 109.47038 * 300.00030 * 8 6 5 36 36 H 0.96997 * 120.00575 * 179.97438 * 14 13 11 37 37 H 1.08004 * 119.99882 * 0.02562 * 20 19 9 38 38 H 1.08000 * 120.00060 * 180.23310 * 21 20 19 39 39 H 1.08001 * 120.00052 * 179.82999 * 22 21 20 40 40 H 1.07998 * 120.00360 * 179.97438 * 23 22 21 41 41 H 1.07995 * 120.00319 * 359.97438 * 24 19 9 42 42 H 1.09001 * 109.46691 * 61.44908 * 26 25 5 43 43 H 1.08998 * 109.47251 * 181.44769 * 26 25 5 44 44 H 1.09000 * 109.47039 * 301.45264 * 26 25 5 45 45 H 1.09000 * 109.46888 * 58.54877 * 27 25 5 46 46 H 1.09007 * 109.46826 * 178.54641 * 27 25 5 47 47 H 1.08999 * 109.47686 * 298.54897 * 27 25 5 48 48 H 1.08997 * 110.71641 * 140.55567 * 28 25 5 49 49 H 1.08995 * 110.72252 * 263.65593 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8123 1.2001 5 7 3.4272 -1.2433 0.7729 6 6 4.4477 -1.5621 1.5935 7 8 5.5127 -1.9106 1.1296 8 6 4.2654 -1.4855 3.0875 9 6 5.5655 -1.8964 3.7816 10 1 6.3853 -1.2806 3.4116 11 6 5.8546 -3.3462 3.4890 12 1 5.0464 -4.0192 3.2437 13 6 7.1509 -3.8136 3.5346 14 7 7.4155 -5.0540 3.1868 15 14 8.5317 -2.6847 4.0904 16 1 8.6168 -2.6997 5.5728 17 1 9.8176 -3.1556 3.5159 18 1 8.2583 -1.3016 3.6241 19 6 5.4236 -1.7029 5.2693 20 6 4.3836 -2.3089 5.9491 21 6 4.2557 -2.1345 7.3144 22 6 5.1630 -1.3474 7.9987 23 6 6.2000 -0.7371 7.3181 24 6 6.3301 -0.9146 5.9533 25 6 3.4675 -1.2738 -0.6964 26 6 4.5555 -0.3270 -1.2070 27 6 3.7449 -2.6987 -1.1798 28 6 2.0861 -0.8075 -1.2025 29 1 -0.3633 -1.0253 0.0696 30 1 -0.3633 0.5729 0.8532 31 1 -0.3633 0.4524 -0.9226 32 1 1.4525 -1.6787 1.3982 33 1 2.1516 -0.1809 2.0859 34 1 3.4636 -2.1587 3.3907 35 1 4.0091 -0.4646 3.3704 36 1 8.3275 -5.3827 3.2186 37 1 3.6730 -2.9214 5.4140 38 1 3.4454 -2.6110 7.8461 39 1 5.0615 -1.2089 9.0650 40 1 6.9086 -0.1218 7.8525 41 1 7.1403 -0.4379 5.4216 42 1 5.5262 -0.6549 -0.8350 43 1 4.5623 -0.3354 -2.2969 44 1 4.3531 0.6837 -0.8526 45 1 2.9687 -3.3667 -0.8062 46 1 3.7477 -2.7186 -2.2697 47 1 4.7158 -3.0261 -0.8079 48 1 2.1922 -0.1692 -2.0797 49 1 1.4479 -1.6627 -1.4245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356267627.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:20 Heat of formation + Delta-G solvation = -19.074909 kcal Electronic energy + Delta-G solvation = -27471.146367 eV Core-core repulsion = 23976.544070 eV Total energy + Delta-G solvation = -3494.602297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.15026 -38.68650 -37.29284 -34.17970 -33.24606 -32.28743 -31.53588 -30.23554 -28.82076 -27.08883 -27.00844 -25.94260 -25.22700 -22.71806 -21.95023 -21.10278 -20.43743 -19.23668 -17.85699 -16.95729 -16.41839 -16.17044 -15.78873 -14.78498 -14.54633 -14.33670 -14.08898 -13.85012 -13.78061 -13.55003 -13.05848 -13.01391 -12.81149 -12.69182 -12.56650 -12.35997 -12.27537 -12.12601 -11.93850 -11.77331 -11.62205 -11.39736 -11.19137 -10.98169 -10.81603 -10.69955 -10.63745 -10.56308 -10.33295 -10.31396 -9.83903 -9.56939 -9.13928 -8.80831 -8.43042 -8.21158 -8.14237 -7.78956 -5.96035 -3.91724 2.07940 2.14639 3.41295 3.43288 3.46163 3.47357 3.52016 4.43794 4.51230 4.55975 4.57527 4.75517 5.13770 5.26721 5.29512 5.30452 5.38477 5.45567 5.51354 5.53985 5.56855 5.59759 5.68285 5.77275 5.77738 5.85179 5.86658 5.91269 5.94246 5.96435 6.01568 6.06585 6.14063 6.20212 6.22122 6.24487 6.33248 6.49018 6.58621 6.65802 6.70531 6.81291 6.97832 7.07304 7.13668 7.26193 7.60576 7.72201 7.82683 8.12514 8.55423 9.02791 9.06938 9.67289 11.17152 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.004779 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.234526 B = 5857.824327 C = 7181.854285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.082 0.918 4 C 0.107 3.893 5 N -0.626 5.626 6 C 0.532 3.468 7 O -0.494 6.494 8 C -0.109 4.109 9 C 0.048 3.952 10 H 0.054 0.946 11 C -0.479 4.479 12 H 0.071 0.929 13 C 0.083 3.917 14 N -0.898 5.898 15 Si 0.868 3.132 16 H -0.273 1.273 17 H -0.293 1.293 18 H -0.263 1.263 19 C -0.037 4.037 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.151 4.151 23 C -0.122 4.122 24 C -0.142 4.142 25 C 0.163 3.837 26 C -0.155 4.155 27 C -0.156 4.156 28 C -0.119 4.119 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.261 0.739 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.316 11.520 -3.522 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 H 0.100 0.900 4 C -0.016 4.016 5 N -0.364 5.364 6 C 0.321 3.679 7 O -0.365 6.365 8 C -0.150 4.150 9 C 0.029 3.971 10 H 0.072 0.928 11 C -0.516 4.516 12 H 0.089 0.911 13 C -0.119 4.119 14 N -0.536 5.536 15 Si 0.696 3.304 16 H -0.198 1.198 17 H -0.220 1.220 18 H -0.188 1.188 19 C -0.038 4.038 20 C -0.125 4.125 21 C -0.142 4.142 22 C -0.169 4.169 23 C -0.140 4.140 24 C -0.160 4.160 25 C 0.079 3.921 26 C -0.213 4.213 27 C -0.214 4.214 28 C -0.157 4.157 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.093 0.907 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.455 11.137 -3.731 17.120 hybrid contribution 0.832 0.338 0.421 0.992 sum -11.624 11.475 -3.310 16.666 Atomic orbital electron populations 1.21699 0.94099 1.02156 1.01834 1.22379 0.95763 0.99320 0.95061 0.89973 1.22316 0.84325 0.97782 0.97223 1.48791 1.12251 1.69898 1.05492 1.20483 0.82509 0.76219 0.88724 1.90720 1.25543 1.43343 1.76896 1.21593 1.01616 1.00824 0.90917 1.18273 0.93420 0.99314 0.86100 0.92811 1.20586 0.94094 0.91202 1.45713 0.91113 1.24857 0.98322 0.94658 0.94076 1.69883 1.20070 1.15685 1.47955 0.87058 0.82027 0.82065 0.79224 1.19845 1.22000 1.18804 1.20780 0.92423 0.91587 0.99018 1.20926 0.98769 0.99261 0.93576 1.21042 0.99187 0.99243 0.94746 1.20851 0.96735 1.00458 0.98868 1.20961 0.98116 1.00420 0.94503 1.21083 1.00044 1.00484 0.94390 1.20835 0.94722 0.95667 0.80919 1.22133 1.00416 0.98607 1.00146 1.22142 1.03834 0.95359 1.00114 1.22819 0.95280 0.99909 0.97717 0.92323 0.92384 0.92411 0.91795 0.90903 0.89977 0.91511 0.92877 0.86410 0.87148 0.87363 0.87331 0.87286 0.90684 0.92497 0.93037 0.92837 0.92600 0.90427 0.90553 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.31 37.16 0.35 -0.68 16 2 C -0.11 -1.00 3.65 -88.35 -0.32 -1.32 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.11 1.27 6.16 -2.41 -0.01 1.25 16 5 N -0.63 -9.87 2.82 -155.67 -0.44 -10.31 16 6 C 0.53 10.71 7.17 -10.98 -0.08 10.63 16 7 O -0.49 -12.15 12.59 5.56 0.07 -12.08 16 8 C -0.11 -2.10 3.84 -27.88 -0.11 -2.21 16 9 C 0.05 1.12 1.24 -92.93 -0.12 1.01 16 10 H 0.05 1.36 5.26 -51.93 -0.27 1.08 16 11 C -0.48 -13.34 7.19 -34.44 -0.25 -13.59 16 12 H 0.07 2.14 8.05 -52.49 -0.42 1.72 16 13 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 14 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 15 Si 0.87 22.85 24.76 -169.99 -4.21 18.64 16 16 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 18 H -0.26 -6.64 5.95 56.52 0.34 -6.31 16 19 C -0.04 -0.80 4.30 -104.63 -0.45 -1.25 16 20 C -0.11 -2.08 8.94 -39.58 -0.35 -2.43 16 21 C -0.12 -2.12 10.05 -39.58 -0.40 -2.51 16 22 C -0.15 -2.50 10.05 -39.58 -0.40 -2.90 16 23 C -0.12 -2.16 10.05 -39.58 -0.40 -2.56 16 24 C -0.14 -2.89 8.15 -39.58 -0.32 -3.21 16 25 C 0.16 2.29 0.83 -130.84 -0.11 2.18 16 26 C -0.15 -2.18 8.37 37.16 0.31 -1.87 16 27 C -0.16 -2.39 8.42 37.16 0.31 -2.08 16 28 C -0.12 -1.22 5.48 -24.90 -0.14 -1.36 16 29 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.73 7.99 -51.93 -0.41 0.31 16 33 H 0.07 0.80 7.48 -51.93 -0.39 0.41 16 34 H 0.08 1.49 7.33 -51.93 -0.38 1.11 16 35 H 0.07 1.10 7.85 -51.93 -0.41 0.70 16 36 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 37 H 0.12 2.20 7.37 -52.48 -0.39 1.82 16 38 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.11 2.22 6.76 -52.49 -0.35 1.86 16 42 H 0.07 1.31 6.74 -51.93 -0.35 0.96 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 47 H 0.08 1.50 6.88 -51.93 -0.36 1.14 16 48 H 0.08 0.68 7.83 -51.93 -0.41 0.27 16 49 H 0.07 0.73 7.75 -51.93 -0.40 0.33 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -33.36 377.81 -9.08 -42.44 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.39 Total: 3.73 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -2.58 Total: -20.53 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.33 Total: -37.90 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.21 Total: 18.64 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.36 -9.08 -42.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356267627.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.365 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds