Wall clock time and date at job start Tue Mar 31 2020 10:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.88099 * 2 1 4 4 C 1.55132 * 110.90474 * 124.09264 * 2 1 3 5 5 N 1.47428 * 104.71893 * 155.27616 * 4 2 1 6 6 C 1.34772 * 125.64691 * 155.81609 * 5 4 2 7 7 O 1.21281 * 120.00189 * 179.69142 * 6 5 4 8 8 C 1.50706 * 119.99930 * 359.69294 * 6 5 4 9 9 C 1.52998 * 109.47057 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47085 * 54.99997 * 9 8 6 11 11 C 1.50698 * 109.47188 * 295.00200 * 9 8 6 12 12 H 1.08001 * 120.00205 * 334.71652 * 11 9 8 13 13 C 1.37875 * 120.00449 * 154.72459 * 11 9 8 14 14 N 1.31514 * 120.00717 * 184.85457 * 13 11 9 15 15 Si 1.86805 * 119.99666 * 4.85060 * 13 11 9 16 16 H 1.48498 * 109.47064 * 84.63920 * 15 13 11 17 17 H 1.48504 * 109.47032 * 204.63890 * 15 13 11 18 18 H 1.48500 * 109.47268 * 324.63551 * 15 13 11 19 19 C 1.50694 * 109.47345 * 175.00061 * 9 8 6 20 20 C 1.38235 * 120.00031 * 55.27342 * 19 9 8 21 21 C 1.38235 * 120.00119 * 179.81076 * 20 19 9 22 22 C 1.38237 * 119.99905 * 0.40113 * 21 20 19 23 23 C 1.38234 * 119.99989 * 359.85321 * 22 21 20 24 24 C 1.38237 * 119.99950 * 235.55179 * 19 9 8 25 25 C 1.47020 * 108.70093 * 335.55441 * 5 4 2 26 26 C 1.53000 * 109.88466 * 120.70603 * 25 5 4 27 27 C 1.53005 * 109.87821 * 241.86707 * 25 5 4 28 28 C 1.54323 * 107.27601 * 1.28404 * 25 5 4 29 29 H 1.09003 * 109.46888 * 183.88515 * 1 2 3 30 30 H 1.08999 * 109.46762 * 303.88113 * 1 2 3 31 31 H 1.08991 * 109.47106 * 63.88133 * 1 2 3 32 32 H 1.09001 * 110.49839 * 36.43574 * 4 2 1 33 33 H 1.08995 * 110.34220 * 274.03794 * 4 2 1 34 34 H 1.08996 * 109.47099 * 60.00045 * 8 6 5 35 35 H 1.08995 * 109.47038 * 300.00030 * 8 6 5 36 36 H 0.96997 * 120.00575 * 179.97438 * 14 13 11 37 37 H 1.08004 * 119.99882 * 0.02562 * 20 19 9 38 38 H 1.08000 * 120.00060 * 180.23310 * 21 20 19 39 39 H 1.08001 * 120.00052 * 179.82999 * 22 21 20 40 40 H 1.07998 * 120.00360 * 179.97438 * 23 22 21 41 41 H 1.07995 * 120.00319 * 359.97438 * 24 19 9 42 42 H 1.09001 * 109.46691 * 61.44908 * 26 25 5 43 43 H 1.08998 * 109.47251 * 181.44769 * 26 25 5 44 44 H 1.09000 * 109.47039 * 301.45264 * 26 25 5 45 45 H 1.09000 * 109.46888 * 58.54877 * 27 25 5 46 46 H 1.09007 * 109.46826 * 178.54641 * 27 25 5 47 47 H 1.08999 * 109.47686 * 298.54897 * 27 25 5 48 48 H 1.08997 * 110.71641 * 140.55567 * 28 25 5 49 49 H 1.08995 * 110.72252 * 263.65593 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8123 1.2001 5 7 3.4272 -1.2433 0.7729 6 6 4.4477 -1.5621 1.5935 7 8 5.5127 -1.9106 1.1296 8 6 4.2654 -1.4855 3.0875 9 6 5.5655 -1.8964 3.7816 10 1 6.3853 -1.2806 3.4116 11 6 5.8546 -3.3462 3.4890 12 1 5.0464 -4.0192 3.2437 13 6 7.1509 -3.8136 3.5346 14 7 7.4155 -5.0540 3.1868 15 14 8.5317 -2.6847 4.0904 16 1 8.6168 -2.6997 5.5728 17 1 9.8176 -3.1556 3.5159 18 1 8.2583 -1.3016 3.6241 19 6 5.4236 -1.7029 5.2693 20 6 4.3836 -2.3089 5.9491 21 6 4.2557 -2.1345 7.3144 22 6 5.1630 -1.3474 7.9987 23 6 6.2000 -0.7371 7.3181 24 6 6.3301 -0.9146 5.9533 25 6 3.4675 -1.2738 -0.6964 26 6 4.5555 -0.3270 -1.2070 27 6 3.7449 -2.6987 -1.1798 28 6 2.0861 -0.8075 -1.2025 29 1 -0.3633 -1.0253 0.0696 30 1 -0.3633 0.5729 0.8532 31 1 -0.3633 0.4524 -0.9226 32 1 1.4525 -1.6787 1.3982 33 1 2.1516 -0.1809 2.0859 34 1 3.4636 -2.1587 3.3907 35 1 4.0091 -0.4646 3.3704 36 1 8.3275 -5.3827 3.2186 37 1 3.6730 -2.9214 5.4140 38 1 3.4454 -2.6110 7.8461 39 1 5.0615 -1.2089 9.0650 40 1 6.9086 -0.1218 7.8525 41 1 7.1403 -0.4379 5.4216 42 1 5.5262 -0.6549 -0.8350 43 1 4.5623 -0.3354 -2.2969 44 1 4.3531 0.6837 -0.8526 45 1 2.9687 -3.3667 -0.8062 46 1 3.7477 -2.7186 -2.2697 47 1 4.7158 -3.0261 -0.8079 48 1 2.1922 -0.1692 -2.0797 49 1 1.4479 -1.6627 -1.4245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356267627.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:19 Heat of formation + Delta-G solvation = -38.589570 kcal Electronic energy + Delta-G solvation = -27471.992586 eV Core-core repulsion = 23976.544070 eV Total energy + Delta-G solvation = -3495.448516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.42598 -40.14319 -38.70791 -35.90736 -34.32168 -33.84481 -33.29053 -31.66078 -30.30545 -28.28647 -28.09730 -27.55520 -26.33650 -24.43921 -23.38540 -22.38536 -21.37590 -20.76491 -19.27875 -19.03143 -17.86461 -17.23374 -17.14967 -16.58579 -16.01281 -15.86515 -15.57462 -15.25375 -14.83343 -14.79607 -14.61017 -14.37177 -14.25562 -14.01938 -13.93670 -13.61840 -13.53894 -13.35303 -13.27152 -13.13359 -12.90343 -12.69596 -12.59329 -12.46918 -12.25208 -12.15033 -11.92023 -11.84629 -11.62387 -11.49858 -11.47417 -11.30026 -11.09833 -10.73250 -10.34082 -9.65503 -9.47170 -9.32793 -8.25108 -6.20885 0.63574 0.69889 1.26496 1.30204 1.35663 1.94616 2.17273 2.35474 3.04409 3.17782 3.54954 3.58941 3.93304 4.05324 4.08431 4.14259 4.20888 4.27446 4.28274 4.37916 4.42544 4.46437 4.53197 4.57912 4.66502 4.69647 4.77757 4.78384 4.81715 4.84540 4.90542 4.94271 5.00357 5.01500 5.07783 5.18116 5.19033 5.26375 5.34851 5.35749 5.36879 5.43570 5.54698 5.66609 5.73081 5.76353 5.81063 5.98553 6.30036 6.31513 6.74840 6.77569 7.40299 7.54948 8.92305 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.004779 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.234526 B = 5857.824327 C = 7181.854285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.088 0.912 4 C 0.095 3.905 5 N -0.623 5.623 6 C 0.522 3.478 7 O -0.554 6.554 8 C -0.103 4.103 9 C 0.052 3.948 10 H 0.030 0.970 11 C -0.457 4.457 12 H 0.031 0.969 13 C 0.020 3.980 14 N -0.952 5.952 15 Si 0.921 3.079 16 H -0.259 1.259 17 H -0.300 1.300 18 H -0.254 1.254 19 C -0.062 4.062 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.140 4.140 23 C -0.123 4.123 24 C -0.162 4.162 25 C 0.152 3.848 26 C -0.149 4.149 27 C -0.152 4.152 28 C -0.108 4.108 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.258 0.742 37 H 0.114 0.886 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.101 0.899 42 H 0.029 0.971 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.082 0.918 47 H 0.024 0.976 48 H 0.099 0.901 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.143 14.417 -1.975 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.107 0.893 4 C -0.027 4.027 5 N -0.359 5.359 6 C 0.312 3.688 7 O -0.431 6.431 8 C -0.143 4.143 9 C 0.033 3.967 10 H 0.048 0.952 11 C -0.495 4.495 12 H 0.049 0.951 13 C -0.176 4.176 14 N -0.594 5.594 15 Si 0.748 3.252 16 H -0.184 1.184 17 H -0.228 1.228 18 H -0.178 1.178 19 C -0.063 4.063 20 C -0.139 4.139 21 C -0.137 4.137 22 C -0.158 4.158 23 C -0.141 4.141 24 C -0.180 4.180 25 C 0.068 3.932 26 C -0.207 4.207 27 C -0.210 4.210 28 C -0.146 4.146 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.067 0.933 37 H 0.132 0.868 38 H 0.162 0.838 39 H 0.167 0.833 40 H 0.157 0.843 41 H 0.119 0.881 42 H 0.049 0.951 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.044 0.956 48 H 0.118 0.882 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.357 14.083 -2.179 20.951 hybrid contribution 1.550 -0.531 -0.038 1.639 sum -13.807 13.552 -2.217 19.473 Atomic orbital electron populations 1.21671 0.91949 1.02562 1.03065 1.22363 0.97291 0.98830 0.92862 0.89332 1.22682 0.82154 0.98724 0.99106 1.48781 1.12773 1.67996 1.06306 1.20682 0.82711 0.75898 0.89526 1.90701 1.28132 1.46359 1.77861 1.21500 0.99767 1.02688 0.90305 1.18080 0.94585 0.95487 0.88538 0.95228 1.20766 0.92531 0.93062 1.43124 0.95109 1.25603 1.00976 0.95857 0.95197 1.70034 1.20249 1.17754 1.51392 0.86192 0.78870 0.80719 0.79383 1.18372 1.22766 1.17820 1.20491 0.94440 0.94127 0.97246 1.21020 0.98448 0.99395 0.95068 1.21429 1.00039 0.98631 0.93624 1.21353 0.95186 0.98432 1.00807 1.21332 0.99003 1.00381 0.93374 1.21180 0.99786 1.01151 0.95933 1.21131 0.97405 0.94772 0.79930 1.22072 0.98115 0.98889 1.01654 1.22094 1.00703 0.96458 1.01747 1.22801 0.92310 1.00765 0.98744 0.92319 0.91489 0.90935 0.91174 0.89801 0.89136 0.88351 0.93276 0.86767 0.83788 0.83314 0.84334 0.88109 0.95134 0.89974 0.91937 0.93030 0.89882 0.95628 0.88204 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.31 71.98 0.67 -0.76 16 2 C -0.09 -1.46 3.65 -9.32 -0.03 -1.50 16 3 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 4 C 0.10 2.08 6.16 86.93 0.54 2.61 16 5 N -0.62 -19.77 2.82 -764.81 -2.15 -21.92 16 6 C 0.52 22.07 7.17 87.66 0.63 22.70 16 7 O -0.55 -29.49 12.59 -3.03 -0.04 -29.53 16 8 C -0.10 -4.03 3.84 29.85 0.11 -3.92 16 9 C 0.05 2.53 1.24 -12.29 -0.02 2.51 16 10 H 0.03 1.56 5.26 -2.39 -0.01 1.55 16 11 C -0.46 -27.01 7.19 25.60 0.18 -26.82 16 12 H 0.03 2.01 8.05 -2.91 -0.02 1.98 16 13 C 0.02 1.24 5.47 84.65 0.46 1.70 16 14 N -0.95 -64.02 13.96 21.45 0.30 -63.73 16 15 Si 0.92 49.37 24.76 68.60 1.70 51.07 16 16 H -0.26 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.30 -16.22 7.11 99.48 0.71 -15.52 16 18 H -0.25 -13.01 5.95 99.48 0.59 -12.42 16 19 C -0.06 -2.65 4.30 -19.87 -0.09 -2.74 16 20 C -0.12 -4.56 8.94 22.27 0.20 -4.36 16 21 C -0.12 -3.65 10.05 22.27 0.22 -3.42 16 22 C -0.14 -3.98 10.05 22.27 0.22 -3.75 16 23 C -0.12 -3.94 10.05 22.27 0.22 -3.71 16 24 C -0.16 -6.40 8.15 22.27 0.18 -6.22 16 25 C 0.15 4.20 0.83 3.96 0.00 4.21 16 26 C -0.15 -4.21 8.37 71.98 0.60 -3.61 16 27 C -0.15 -4.82 8.42 71.98 0.61 -4.22 16 28 C -0.11 -1.89 5.48 31.78 0.17 -1.72 16 29 H 0.06 0.64 8.07 -2.39 -0.02 0.63 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 1.47 7.99 -2.39 -0.02 1.45 16 33 H 0.08 1.65 7.48 -2.39 -0.02 1.63 16 34 H 0.09 3.35 7.33 -2.39 -0.02 3.34 16 35 H 0.10 3.19 7.85 -2.39 -0.02 3.17 16 36 H 0.26 16.53 8.31 -92.71 -0.77 15.76 16 37 H 0.11 4.26 7.37 -2.91 -0.02 4.24 16 38 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 39 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 40 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 41 H 0.10 4.05 6.76 -2.91 -0.02 4.03 16 42 H 0.03 1.13 6.74 -2.39 -0.02 1.11 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 47 H 0.02 1.06 6.88 -2.39 -0.02 1.04 16 48 H 0.10 1.35 7.83 -2.39 -0.02 1.33 16 49 H 0.08 1.36 7.75 -2.39 -0.02 1.35 16 Total: -1.00 -80.86 377.81 5.49 -75.37 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.79 Total: 21.76 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 4.90 Total: -33.02 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -1.86 Total: -85.65 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.04 Total: -29.53 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.70 Total: 51.07 kcal Total: -80.86 5.49 -75.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356267627.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.780 kcal (2) G-P(sol) polarization free energy of solvation -80.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds