Wall clock time and date at job start Tue Mar 31 2020 11:13:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30996 * 1
3 3 C 1.50707 * 119.99801 * 2 1
4 4 C 1.53000 * 109.47263 * 124.99702 * 3 2 1
5 5 C 1.52995 * 109.46921 * 180.02562 * 4 3 2
6 6 C 1.53007 * 109.47113 * 180.02562 * 5 4 3
7 7 H 1.09000 * 109.46687 * 54.99721 * 6 5 4
8 8 C 1.52998 * 109.47021 * 175.00231 * 6 5 4
9 9 N 1.46504 * 109.46833 * 295.00054 * 6 5 4
10 10 C 1.34774 * 119.99467 * 154.99695 * 9 6 5
11 11 O 1.21275 * 120.00685 * 0.02562 * 10 9 6
12 12 C 1.50709 * 119.99677 * 180.02562 * 10 9 6
13 13 C 1.53000 * 109.47062 * 180.02562 * 12 10 9
14 14 H 1.09007 * 109.46937 * 54.99862 * 13 12 10
15 15 C 1.50696 * 109.47104 * 295.00043 * 13 12 10
16 16 H 1.07997 * 119.99861 * 325.12457 * 15 13 12
17 17 C 1.37875 * 120.00142 * 145.12968 * 15 13 12
18 18 N 1.31512 * 120.00061 * 184.98976 * 17 15 13
19 19 Si 1.86803 * 119.99825 * 4.98409 * 17 15 13
20 20 H 1.48493 * 109.47055 * 84.73570 * 19 17 15
21 21 H 1.48504 * 109.46957 * 204.73265 * 19 17 15
22 22 H 1.48494 * 109.47278 * 324.72908 * 19 17 15
23 23 C 1.50703 * 109.47054 * 174.99815 * 13 12 10
24 24 C 1.38231 * 119.99571 * 64.69161 * 23 13 12
25 25 C 1.38240 * 119.99566 * 179.79074 * 24 23 13
26 26 C 1.38234 * 120.00054 * 0.43596 * 25 24 23
27 27 C 1.38238 * 120.00087 * 359.81774 * 26 25 24
28 28 C 1.38234 * 119.99894 * 244.96820 * 23 13 12
29 29 H 1.08001 * 119.99620 * 179.97438 * 1 2 3
30 30 H 1.07996 * 120.00615 * 0.02562 * 1 2 3
31 31 H 1.07996 * 120.00615 * 179.97438 * 2 1 3
32 32 H 1.09009 * 109.47082 * 4.99809 * 3 2 1
33 33 H 1.08998 * 109.47259 * 245.00391 * 3 2 1
34 34 H 1.08999 * 109.46770 * 60.00552 * 4 3 2
35 35 H 1.09005 * 109.47066 * 300.00067 * 4 3 2
36 36 H 1.08999 * 109.47079 * 60.00580 * 5 4 3
37 37 H 1.09003 * 109.47602 * 300.00134 * 5 4 3
38 38 H 1.09005 * 109.47004 * 299.99344 * 8 6 5
39 39 H 1.08991 * 109.47628 * 60.00052 * 8 6 5
40 40 H 1.09007 * 109.46591 * 180.02562 * 8 6 5
41 41 H 0.96993 * 119.99844 * 334.99743 * 9 6 5
42 42 H 1.09004 * 109.46715 * 300.00121 * 12 10 9
43 43 H 1.08993 * 109.47153 * 60.00265 * 12 10 9
44 44 H 0.97003 * 119.99759 * 180.02562 * 18 17 15
45 45 H 1.07997 * 120.00741 * 359.97438 * 24 23 13
46 46 H 1.07995 * 120.00130 * 180.27877 * 25 24 23
47 47 H 1.07999 * 120.00426 * 179.83590 * 26 25 24
48 48 H 1.07995 * 120.00283 * 179.97438 * 27 26 25
49 49 H 1.08000 * 120.00477 * 359.97400 * 28 23 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3052 0.0000
4 6 3.0349 1.3333 1.1817
5 6 3.7994 2.6586 1.1820
6 6 4.7714 2.6864 2.3633
7 1 5.4193 1.8109 2.3213
8 6 5.6233 3.9553 2.2929
9 7 4.0153 2.6748 3.6181
10 6 4.5847 2.1996 4.7434
11 8 5.7230 1.7821 4.7175
12 6 3.8068 2.1871 6.0342
13 6 4.6773 1.6031 7.1486
14 1 5.6118 2.1609 7.2097
15 6 4.9745 0.1566 6.8482
16 1 4.2316 -0.4573 6.3607
17 6 6.1947 -0.3831 7.1957
18 7 6.4918 -1.6158 6.8468
19 14 7.4258 0.6366 8.1621
20 1 7.1222 0.5358 9.6121
21 1 8.7978 0.1286 7.9072
22 1 7.3364 2.0560 7.7350
23 6 3.9456 1.7033 8.4623
24 6 2.7759 0.9932 8.6577
25 6 2.1070 1.0817 9.8643
26 6 2.6030 1.8874 10.8721
27 6 3.7700 2.6016 10.6747
28 6 4.4412 2.5098 9.4697
29 1 -0.5399 -0.9354 -0.0004
30 1 -0.5401 0.9352 -0.0004
31 1 1.8500 -0.9352 0.0004
32 1 1.3584 2.1318 0.0895
33 1 2.6212 1.4028 -0.9314
34 1 3.7399 0.5068 1.0920
35 1 2.4771 1.2358 2.1131
36 1 3.0941 3.4848 1.2718
37 1 4.3572 2.7566 0.2506
38 1 6.1859 3.9640 1.3593
39 1 4.9754 4.8308 2.3349
40 1 6.3160 3.9749 3.1343
41 1 3.1050 3.0090 3.6389
42 1 3.5186 3.2056 6.2945
43 1 2.9124 1.5760 5.9134
44 1 7.3502 -1.9956 7.0916
45 1 2.3860 0.3669 7.8690
46 1 1.1955 0.5234 10.0186
47 1 2.0791 1.9587 11.8138
48 1 4.1574 3.2314 11.4619
49 1 5.3529 3.0678 9.3155
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000356623698.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:13:34
Heat of formation + Delta-G solvation = -18.744443 kcal
Electronic energy + Delta-G solvation = -26192.681789 eV
Core-core repulsion = 22698.093822 eV
Total energy + Delta-G solvation = -3494.587967 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-39.35040 -38.47223 -36.82979 -35.10254 -33.95712 -32.01833 -31.58384 -30.30775
-30.18173 -28.69310 -26.41885 -25.80641 -22.80613 -22.10275 -21.82815 -20.92356
-20.10685 -19.78992 -19.12003 -16.92013 -16.58144 -15.94457 -15.90694 -15.51055
-14.58244 -14.51500 -14.31794 -14.20143 -13.92160 -13.80029 -13.24911 -13.06779
-12.98349 -12.72405 -12.52056 -12.50467 -12.16970 -11.98953 -11.87258 -11.78366
-11.64594 -11.36354 -11.13422 -10.85023 -10.77691 -10.76698 -10.51739 -10.48802
-10.34086 -9.83030 -9.57954 -9.42565 -9.05066 -8.88006 -8.52296 -8.37882
-8.22589 -7.80665 -5.95032 -3.91208 2.08826 2.14866 2.16814 3.43733
3.47993 3.49155 3.56676 3.75308 4.52784 4.57251 4.59085 4.87140
4.89216 5.08219 5.21580 5.32089 5.35905 5.48712 5.51642 5.55438
5.58070 5.58193 5.67710 5.71199 5.75457 5.76171 5.84424 5.91244
5.97097 6.05058 6.07049 6.10507 6.24508 6.29178 6.31397 6.34275
6.40078 6.52082 6.64873 6.65598 6.71050 6.84480 7.02618 7.07726
7.13964 7.27138 7.60293 7.74090 7.85170 8.14507 8.56585 9.03740
9.12026 9.69853 11.18297
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.011473 B = 0.003651 C = 0.003339
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2440.003266 B = 7666.763475 C = 8384.846702
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.150 4.150
3 C -0.094 4.094
4 C -0.117 4.117
5 C -0.123 4.123
6 C 0.142 3.858
7 H 0.087 0.913
8 C -0.162 4.162
9 N -0.743 5.743
10 C 0.514 3.486
11 O -0.500 6.500
12 C -0.116 4.116
13 C 0.046 3.954
14 H 0.057 0.943
15 C -0.483 4.483
16 H 0.070 0.930
17 C 0.087 3.913
18 N -0.899 5.899
19 Si 0.870 3.130
20 H -0.277 1.277
21 H -0.292 1.292
22 H -0.261 1.261
23 C -0.039 4.039
24 C -0.102 4.102
25 C -0.126 4.126
26 C -0.150 4.150
27 C -0.124 4.124
28 C -0.141 4.141
29 H 0.095 0.905
30 H 0.094 0.906
31 H 0.108 0.892
32 H 0.064 0.936
33 H 0.069 0.931
34 H 0.066 0.934
35 H 0.068 0.932
36 H 0.064 0.936
37 H 0.072 0.928
38 H 0.058 0.942
39 H 0.051 0.949
40 H 0.061 0.939
41 H 0.391 0.609
42 H 0.066 0.934
43 H 0.082 0.918
44 H 0.261 0.739
45 H 0.120 0.880
46 H 0.110 0.890
47 H 0.108 0.892
48 H 0.108 0.892
49 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.406 10.429 -8.613 17.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.168 4.168
3 C -0.131 4.131
4 C -0.154 4.154
5 C -0.161 4.161
6 C 0.037 3.963
7 H 0.105 0.895
8 C -0.220 4.220
9 N -0.398 5.398
10 C 0.300 3.700
11 O -0.371 6.371
12 C -0.156 4.156
13 C 0.027 3.973
14 H 0.075 0.925
15 C -0.520 4.520
16 H 0.088 0.912
17 C -0.115 4.115
18 N -0.537 5.537
19 Si 0.699 3.301
20 H -0.203 1.203
21 H -0.218 1.218
22 H -0.187 1.187
23 C -0.039 4.039
24 C -0.120 4.120
25 C -0.144 4.144
26 C -0.168 4.168
27 C -0.142 4.142
28 C -0.159 4.159
29 H 0.113 0.887
30 H 0.112 0.888
31 H 0.126 0.874
32 H 0.083 0.917
33 H 0.088 0.912
34 H 0.085 0.915
35 H 0.087 0.913
36 H 0.083 0.917
37 H 0.091 0.909
38 H 0.077 0.923
39 H 0.070 0.930
40 H 0.080 0.920
41 H 0.224 0.776
42 H 0.084 0.916
43 H 0.100 0.900
44 H 0.071 0.929
45 H 0.138 0.862
46 H 0.128 0.872
47 H 0.126 0.874
48 H 0.126 0.874
49 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -9.376 9.947 -8.615 16.157
hybrid contribution 0.293 0.412 0.633 0.810
sum -9.082 10.358 -7.982 15.921
Atomic orbital electron populations
1.23816 0.95989 1.01647 1.02315 1.23032 0.96073 0.98818 0.98851
1.20795 0.98184 0.95126 0.98991 1.21554 0.97970 0.97671 0.98245
1.21883 0.98271 0.97857 0.98106 1.20828 0.93191 0.98954 0.83366
0.89505 1.22171 1.00125 0.97586 1.02123 1.46218 1.17465 1.67230
1.08855 1.20776 0.87844 0.76444 0.84895 1.90736 1.18215 1.42990
1.85166 1.21635 0.99802 1.00669 0.93499 1.18304 0.93971 0.98770
0.86265 0.92478 1.20572 1.00864 0.92272 1.38273 0.91152 1.24853
0.97423 0.94502 0.94757 1.69885 1.22927 1.14706 1.46137 0.86972
0.80983 0.81681 0.80503 1.20305 1.21848 1.18666 1.20813 0.93301
0.91829 0.98005 1.20974 0.95373 0.98662 0.96956 1.21065 0.99923
0.99287 0.94158 1.20860 0.97463 0.99730 0.98789 1.20962 0.96026
1.00202 0.97058 1.21085 1.00214 1.00426 0.94204 0.88689 0.88782
0.87374 0.91749 0.91216 0.91510 0.91319 0.91745 0.90898 0.92314
0.92963 0.91978 0.77628 0.91559 0.89987 0.92907 0.86212 0.87172
0.87407 0.87350 0.87323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.82 14.32 29.02 0.42 -1.41 16
2 C -0.15 -1.46 9.52 -36.02 -0.34 -1.80 16
3 C -0.09 -0.84 5.66 -27.88 -0.16 -1.00 16
4 C -0.12 -1.24 5.08 -26.73 -0.14 -1.37 16
5 C -0.12 -1.20 4.75 -26.73 -0.13 -1.33 16
6 C 0.14 1.87 2.57 -67.93 -0.17 1.70 16
7 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16
8 C -0.16 -1.99 9.48 37.16 0.35 -1.63 16
9 N -0.74 -10.66 4.53 -53.80 -0.24 -10.90 16
10 C 0.51 9.99 7.54 -10.98 -0.08 9.90 16
11 O -0.50 -12.28 14.65 5.56 0.08 -12.20 16
12 C -0.12 -2.16 4.96 -27.88 -0.14 -2.30 16
13 C 0.05 1.06 1.21 -92.92 -0.11 0.95 16
14 H 0.06 1.42 4.70 -51.93 -0.24 1.18 16
15 C -0.48 -13.30 6.87 -34.44 -0.24 -13.53 16
16 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16
17 C 0.09 2.57 5.47 -17.82 -0.10 2.47 16
18 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16
19 Si 0.87 22.97 27.15 -169.99 -4.62 18.36 16
20 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16
21 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16
22 H -0.26 -6.67 6.06 56.52 0.34 -6.32 16
23 C -0.04 -0.82 4.55 -104.62 -0.48 -1.29 16
24 C -0.10 -1.98 8.87 -39.58 -0.35 -2.33 16
25 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16
26 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16
27 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16
28 C -0.14 -2.78 9.43 -39.58 -0.37 -3.15 16
29 H 0.09 0.79 8.06 -52.49 -0.42 0.37 16
30 H 0.09 0.77 7.84 -52.49 -0.41 0.35 16
31 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16
32 H 0.06 0.53 7.79 -51.92 -0.40 0.12 16
33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
35 H 0.07 0.81 7.75 -51.93 -0.40 0.40 16
36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
41 H 0.39 4.42 8.60 -40.82 -0.35 4.07 16
42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
43 H 0.08 1.43 7.86 -51.93 -0.41 1.02 16
44 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16
45 H 0.12 2.30 7.80 -52.49 -0.41 1.89 16
46 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16
47 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16
48 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16
49 H 0.11 2.08 7.95 -52.49 -0.42 1.66 16
LS Contribution 400.66 15.07 6.04 6.04
Total: -1.00 -33.43 400.66 -9.75 -43.19
By element:
Atomic # 1 Polarization: 15.63 SS G_CDS: -8.56 Total: 7.08 kcal
Atomic # 6 Polarization: -20.83 SS G_CDS: -3.23 Total: -24.07 kcal
Atomic # 7 Polarization: -38.92 SS G_CDS: 0.53 Total: -38.39 kcal
Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal
Atomic # 14 Polarization: 22.97 SS G_CDS: -4.62 Total: 18.36 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -33.43 -9.75 -43.19 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356623698.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.441 kcal
(2) G-P(sol) polarization free energy of solvation -33.432 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.991 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.744 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds