Wall clock time and date at job start Tue Mar 31 2020 11:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 119.99801 * 2 1 4 4 C 1.53000 * 109.47263 * 124.99702 * 3 2 1 5 5 C 1.52995 * 109.46921 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.47113 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46687 * 54.99721 * 6 5 4 8 8 C 1.52998 * 109.47021 * 175.00231 * 6 5 4 9 9 N 1.46504 * 109.46833 * 295.00054 * 6 5 4 10 10 C 1.34774 * 119.99467 * 154.99695 * 9 6 5 11 11 O 1.21275 * 120.00685 * 0.02562 * 10 9 6 12 12 C 1.50709 * 119.99677 * 180.02562 * 10 9 6 13 13 C 1.53000 * 109.47062 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.46937 * 54.99862 * 13 12 10 15 15 C 1.50696 * 109.47104 * 295.00043 * 13 12 10 16 16 H 1.07997 * 119.99861 * 325.12457 * 15 13 12 17 17 C 1.37875 * 120.00142 * 145.12968 * 15 13 12 18 18 N 1.31512 * 120.00061 * 184.98976 * 17 15 13 19 19 Si 1.86803 * 119.99825 * 4.98409 * 17 15 13 20 20 H 1.48493 * 109.47055 * 84.73570 * 19 17 15 21 21 H 1.48504 * 109.46957 * 204.73265 * 19 17 15 22 22 H 1.48494 * 109.47278 * 324.72908 * 19 17 15 23 23 C 1.50703 * 109.47054 * 174.99815 * 13 12 10 24 24 C 1.38231 * 119.99571 * 64.69161 * 23 13 12 25 25 C 1.38240 * 119.99566 * 179.79074 * 24 23 13 26 26 C 1.38234 * 120.00054 * 0.43596 * 25 24 23 27 27 C 1.38238 * 120.00087 * 359.81774 * 26 25 24 28 28 C 1.38234 * 119.99894 * 244.96820 * 23 13 12 29 29 H 1.08001 * 119.99620 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00615 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.00615 * 179.97438 * 2 1 3 32 32 H 1.09009 * 109.47082 * 4.99809 * 3 2 1 33 33 H 1.08998 * 109.47259 * 245.00391 * 3 2 1 34 34 H 1.08999 * 109.46770 * 60.00552 * 4 3 2 35 35 H 1.09005 * 109.47066 * 300.00067 * 4 3 2 36 36 H 1.08999 * 109.47079 * 60.00580 * 5 4 3 37 37 H 1.09003 * 109.47602 * 300.00134 * 5 4 3 38 38 H 1.09005 * 109.47004 * 299.99344 * 8 6 5 39 39 H 1.08991 * 109.47628 * 60.00052 * 8 6 5 40 40 H 1.09007 * 109.46591 * 180.02562 * 8 6 5 41 41 H 0.96993 * 119.99844 * 334.99743 * 9 6 5 42 42 H 1.09004 * 109.46715 * 300.00121 * 12 10 9 43 43 H 1.08993 * 109.47153 * 60.00265 * 12 10 9 44 44 H 0.97003 * 119.99759 * 180.02562 * 18 17 15 45 45 H 1.07997 * 120.00741 * 359.97438 * 24 23 13 46 46 H 1.07995 * 120.00130 * 180.27877 * 25 24 23 47 47 H 1.07999 * 120.00426 * 179.83590 * 26 25 24 48 48 H 1.07995 * 120.00283 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00477 * 359.97400 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3333 1.1817 5 6 3.7994 2.6586 1.1820 6 6 4.7714 2.6864 2.3633 7 1 5.4193 1.8109 2.3213 8 6 5.6233 3.9553 2.2929 9 7 4.0153 2.6748 3.6181 10 6 4.5847 2.1996 4.7434 11 8 5.7230 1.7821 4.7175 12 6 3.8068 2.1871 6.0342 13 6 4.6773 1.6031 7.1486 14 1 5.6118 2.1609 7.2097 15 6 4.9745 0.1566 6.8482 16 1 4.2316 -0.4573 6.3607 17 6 6.1947 -0.3831 7.1957 18 7 6.4918 -1.6158 6.8468 19 14 7.4258 0.6366 8.1621 20 1 7.1222 0.5358 9.6121 21 1 8.7978 0.1286 7.9072 22 1 7.3364 2.0560 7.7350 23 6 3.9456 1.7033 8.4623 24 6 2.7759 0.9932 8.6577 25 6 2.1070 1.0817 9.8643 26 6 2.6030 1.8874 10.8721 27 6 3.7700 2.6016 10.6747 28 6 4.4412 2.5098 9.4697 29 1 -0.5399 -0.9354 -0.0004 30 1 -0.5401 0.9352 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3584 2.1318 0.0895 33 1 2.6212 1.4028 -0.9314 34 1 3.7399 0.5068 1.0920 35 1 2.4771 1.2358 2.1131 36 1 3.0941 3.4848 1.2718 37 1 4.3572 2.7566 0.2506 38 1 6.1859 3.9640 1.3593 39 1 4.9754 4.8308 2.3349 40 1 6.3160 3.9749 3.1343 41 1 3.1050 3.0090 3.6389 42 1 3.5186 3.2056 6.2945 43 1 2.9124 1.5760 5.9134 44 1 7.3502 -1.9956 7.0916 45 1 2.3860 0.3669 7.8690 46 1 1.1955 0.5234 10.0186 47 1 2.0791 1.9587 11.8138 48 1 4.1574 3.2314 11.4619 49 1 5.3529 3.0678 9.3155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356623698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:34 Heat of formation + Delta-G solvation = -18.744443 kcal Electronic energy + Delta-G solvation = -26192.681789 eV Core-core repulsion = 22698.093822 eV Total energy + Delta-G solvation = -3494.587967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.35040 -38.47223 -36.82979 -35.10254 -33.95712 -32.01833 -31.58384 -30.30775 -30.18173 -28.69310 -26.41885 -25.80641 -22.80613 -22.10275 -21.82815 -20.92356 -20.10685 -19.78992 -19.12003 -16.92013 -16.58144 -15.94457 -15.90694 -15.51055 -14.58244 -14.51500 -14.31794 -14.20143 -13.92160 -13.80029 -13.24911 -13.06779 -12.98349 -12.72405 -12.52056 -12.50467 -12.16970 -11.98953 -11.87258 -11.78366 -11.64594 -11.36354 -11.13422 -10.85023 -10.77691 -10.76698 -10.51739 -10.48802 -10.34086 -9.83030 -9.57954 -9.42565 -9.05066 -8.88006 -8.52296 -8.37882 -8.22589 -7.80665 -5.95032 -3.91208 2.08826 2.14866 2.16814 3.43733 3.47993 3.49155 3.56676 3.75308 4.52784 4.57251 4.59085 4.87140 4.89216 5.08219 5.21580 5.32089 5.35905 5.48712 5.51642 5.55438 5.58070 5.58193 5.67710 5.71199 5.75457 5.76171 5.84424 5.91244 5.97097 6.05058 6.07049 6.10507 6.24508 6.29178 6.31397 6.34275 6.40078 6.52082 6.64873 6.65598 6.71050 6.84480 7.02618 7.07726 7.13964 7.27138 7.60293 7.74090 7.85170 8.14507 8.56585 9.03740 9.12026 9.69853 11.18297 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.003651 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.003266 B = 7666.763475 C = 8384.846702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.094 4.094 4 C -0.117 4.117 5 C -0.123 4.123 6 C 0.142 3.858 7 H 0.087 0.913 8 C -0.162 4.162 9 N -0.743 5.743 10 C 0.514 3.486 11 O -0.500 6.500 12 C -0.116 4.116 13 C 0.046 3.954 14 H 0.057 0.943 15 C -0.483 4.483 16 H 0.070 0.930 17 C 0.087 3.913 18 N -0.899 5.899 19 Si 0.870 3.130 20 H -0.277 1.277 21 H -0.292 1.292 22 H -0.261 1.261 23 C -0.039 4.039 24 C -0.102 4.102 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.124 4.124 28 C -0.141 4.141 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.391 0.609 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.261 0.739 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.406 10.429 -8.613 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.168 4.168 3 C -0.131 4.131 4 C -0.154 4.154 5 C -0.161 4.161 6 C 0.037 3.963 7 H 0.105 0.895 8 C -0.220 4.220 9 N -0.398 5.398 10 C 0.300 3.700 11 O -0.371 6.371 12 C -0.156 4.156 13 C 0.027 3.973 14 H 0.075 0.925 15 C -0.520 4.520 16 H 0.088 0.912 17 C -0.115 4.115 18 N -0.537 5.537 19 Si 0.699 3.301 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.187 1.187 23 C -0.039 4.039 24 C -0.120 4.120 25 C -0.144 4.144 26 C -0.168 4.168 27 C -0.142 4.142 28 C -0.159 4.159 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.224 0.776 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.138 0.862 46 H 0.128 0.872 47 H 0.126 0.874 48 H 0.126 0.874 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.376 9.947 -8.615 16.157 hybrid contribution 0.293 0.412 0.633 0.810 sum -9.082 10.358 -7.982 15.921 Atomic orbital electron populations 1.23816 0.95989 1.01647 1.02315 1.23032 0.96073 0.98818 0.98851 1.20795 0.98184 0.95126 0.98991 1.21554 0.97970 0.97671 0.98245 1.21883 0.98271 0.97857 0.98106 1.20828 0.93191 0.98954 0.83366 0.89505 1.22171 1.00125 0.97586 1.02123 1.46218 1.17465 1.67230 1.08855 1.20776 0.87844 0.76444 0.84895 1.90736 1.18215 1.42990 1.85166 1.21635 0.99802 1.00669 0.93499 1.18304 0.93971 0.98770 0.86265 0.92478 1.20572 1.00864 0.92272 1.38273 0.91152 1.24853 0.97423 0.94502 0.94757 1.69885 1.22927 1.14706 1.46137 0.86972 0.80983 0.81681 0.80503 1.20305 1.21848 1.18666 1.20813 0.93301 0.91829 0.98005 1.20974 0.95373 0.98662 0.96956 1.21065 0.99923 0.99287 0.94158 1.20860 0.97463 0.99730 0.98789 1.20962 0.96026 1.00202 0.97058 1.21085 1.00214 1.00426 0.94204 0.88689 0.88782 0.87374 0.91749 0.91216 0.91510 0.91319 0.91745 0.90898 0.92314 0.92963 0.91978 0.77628 0.91559 0.89987 0.92907 0.86212 0.87172 0.87407 0.87350 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 14.32 29.02 0.42 -1.41 16 2 C -0.15 -1.46 9.52 -36.02 -0.34 -1.80 16 3 C -0.09 -0.84 5.66 -27.88 -0.16 -1.00 16 4 C -0.12 -1.24 5.08 -26.73 -0.14 -1.37 16 5 C -0.12 -1.20 4.75 -26.73 -0.13 -1.33 16 6 C 0.14 1.87 2.57 -67.93 -0.17 1.70 16 7 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 8 C -0.16 -1.99 9.48 37.16 0.35 -1.63 16 9 N -0.74 -10.66 4.53 -53.80 -0.24 -10.90 16 10 C 0.51 9.99 7.54 -10.98 -0.08 9.90 16 11 O -0.50 -12.28 14.65 5.56 0.08 -12.20 16 12 C -0.12 -2.16 4.96 -27.88 -0.14 -2.30 16 13 C 0.05 1.06 1.21 -92.92 -0.11 0.95 16 14 H 0.06 1.42 4.70 -51.93 -0.24 1.18 16 15 C -0.48 -13.30 6.87 -34.44 -0.24 -13.53 16 16 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 17 C 0.09 2.57 5.47 -17.82 -0.10 2.47 16 18 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 19 Si 0.87 22.97 27.15 -169.99 -4.62 18.36 16 20 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 22 H -0.26 -6.67 6.06 56.52 0.34 -6.32 16 23 C -0.04 -0.82 4.55 -104.62 -0.48 -1.29 16 24 C -0.10 -1.98 8.87 -39.58 -0.35 -2.33 16 25 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 26 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 27 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 28 C -0.14 -2.78 9.43 -39.58 -0.37 -3.15 16 29 H 0.09 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.09 0.77 7.84 -52.49 -0.41 0.35 16 31 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.06 0.53 7.79 -51.92 -0.40 0.12 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.81 7.75 -51.93 -0.40 0.40 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.39 4.42 8.60 -40.82 -0.35 4.07 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.08 1.43 7.86 -51.93 -0.41 1.02 16 44 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 45 H 0.12 2.30 7.80 -52.49 -0.41 1.89 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 48 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 49 H 0.11 2.08 7.95 -52.49 -0.42 1.66 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -33.43 400.66 -9.75 -43.19 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.56 Total: 7.08 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -3.23 Total: -24.07 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.53 Total: -38.39 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.62 Total: 18.36 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.43 -9.75 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356623698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.441 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds