Wall clock time and date at job start Tue Mar 31 2020 11:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50707 * 119.99801 * 2 1 4 4 C 1.53000 * 109.47263 * 124.99702 * 3 2 1 5 5 C 1.52995 * 109.46921 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.47113 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46687 * 54.99721 * 6 5 4 8 8 C 1.52998 * 109.47021 * 175.00231 * 6 5 4 9 9 N 1.46504 * 109.46833 * 295.00054 * 6 5 4 10 10 C 1.34774 * 119.99467 * 154.99695 * 9 6 5 11 11 O 1.21275 * 120.00685 * 0.02562 * 10 9 6 12 12 C 1.50709 * 119.99677 * 180.02562 * 10 9 6 13 13 C 1.53000 * 109.47062 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.46937 * 54.99862 * 13 12 10 15 15 C 1.50696 * 109.47104 * 295.00043 * 13 12 10 16 16 H 1.07997 * 119.99861 * 325.12457 * 15 13 12 17 17 C 1.37875 * 120.00142 * 145.12968 * 15 13 12 18 18 N 1.31512 * 120.00061 * 184.98976 * 17 15 13 19 19 Si 1.86803 * 119.99825 * 4.98409 * 17 15 13 20 20 H 1.48493 * 109.47055 * 84.73570 * 19 17 15 21 21 H 1.48504 * 109.46957 * 204.73265 * 19 17 15 22 22 H 1.48494 * 109.47278 * 324.72908 * 19 17 15 23 23 C 1.50703 * 109.47054 * 174.99815 * 13 12 10 24 24 C 1.38231 * 119.99571 * 64.69161 * 23 13 12 25 25 C 1.38240 * 119.99566 * 179.79074 * 24 23 13 26 26 C 1.38234 * 120.00054 * 0.43596 * 25 24 23 27 27 C 1.38238 * 120.00087 * 359.81774 * 26 25 24 28 28 C 1.38234 * 119.99894 * 244.96820 * 23 13 12 29 29 H 1.08001 * 119.99620 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00615 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.00615 * 179.97438 * 2 1 3 32 32 H 1.09009 * 109.47082 * 4.99809 * 3 2 1 33 33 H 1.08998 * 109.47259 * 245.00391 * 3 2 1 34 34 H 1.08999 * 109.46770 * 60.00552 * 4 3 2 35 35 H 1.09005 * 109.47066 * 300.00067 * 4 3 2 36 36 H 1.08999 * 109.47079 * 60.00580 * 5 4 3 37 37 H 1.09003 * 109.47602 * 300.00134 * 5 4 3 38 38 H 1.09005 * 109.47004 * 299.99344 * 8 6 5 39 39 H 1.08991 * 109.47628 * 60.00052 * 8 6 5 40 40 H 1.09007 * 109.46591 * 180.02562 * 8 6 5 41 41 H 0.96993 * 119.99844 * 334.99743 * 9 6 5 42 42 H 1.09004 * 109.46715 * 300.00121 * 12 10 9 43 43 H 1.08993 * 109.47153 * 60.00265 * 12 10 9 44 44 H 0.97003 * 119.99759 * 180.02562 * 18 17 15 45 45 H 1.07997 * 120.00741 * 359.97438 * 24 23 13 46 46 H 1.07995 * 120.00130 * 180.27877 * 25 24 23 47 47 H 1.07999 * 120.00426 * 179.83590 * 26 25 24 48 48 H 1.07995 * 120.00283 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00477 * 359.97400 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3333 1.1817 5 6 3.7994 2.6586 1.1820 6 6 4.7714 2.6864 2.3633 7 1 5.4193 1.8109 2.3213 8 6 5.6233 3.9553 2.2929 9 7 4.0153 2.6748 3.6181 10 6 4.5847 2.1996 4.7434 11 8 5.7230 1.7821 4.7175 12 6 3.8068 2.1871 6.0342 13 6 4.6773 1.6031 7.1486 14 1 5.6118 2.1609 7.2097 15 6 4.9745 0.1566 6.8482 16 1 4.2316 -0.4573 6.3607 17 6 6.1947 -0.3831 7.1957 18 7 6.4918 -1.6158 6.8468 19 14 7.4258 0.6366 8.1621 20 1 7.1222 0.5358 9.6121 21 1 8.7978 0.1286 7.9072 22 1 7.3364 2.0560 7.7350 23 6 3.9456 1.7033 8.4623 24 6 2.7759 0.9932 8.6577 25 6 2.1070 1.0817 9.8643 26 6 2.6030 1.8874 10.8721 27 6 3.7700 2.6016 10.6747 28 6 4.4412 2.5098 9.4697 29 1 -0.5399 -0.9354 -0.0004 30 1 -0.5401 0.9352 -0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.3584 2.1318 0.0895 33 1 2.6212 1.4028 -0.9314 34 1 3.7399 0.5068 1.0920 35 1 2.4771 1.2358 2.1131 36 1 3.0941 3.4848 1.2718 37 1 4.3572 2.7566 0.2506 38 1 6.1859 3.9640 1.3593 39 1 4.9754 4.8308 2.3349 40 1 6.3160 3.9749 3.1343 41 1 3.1050 3.0090 3.6389 42 1 3.5186 3.2056 6.2945 43 1 2.9124 1.5760 5.9134 44 1 7.3502 -1.9956 7.0916 45 1 2.3860 0.3669 7.8690 46 1 1.1955 0.5234 10.0186 47 1 2.0791 1.9587 11.8138 48 1 4.1574 3.2314 11.4619 49 1 5.3529 3.0678 9.3155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356623698.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:31 Heat of formation + Delta-G solvation = -37.802962 kcal Electronic energy + Delta-G solvation = -26193.508228 eV Core-core repulsion = 22698.093822 eV Total energy + Delta-G solvation = -3495.414406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.84105 -39.88709 -37.92276 -36.17786 -35.65810 -33.76253 -33.03013 -31.61564 -31.36581 -30.11999 -27.76748 -27.18843 -24.46954 -23.34893 -23.01248 -22.01660 -21.44001 -20.78855 -20.53592 -19.03083 -18.06918 -17.23803 -17.14126 -16.44152 -16.35479 -16.04700 -15.68307 -15.43414 -15.14263 -14.96206 -14.79707 -14.45226 -14.28649 -14.08482 -13.98038 -13.83836 -13.62010 -13.37835 -13.19052 -12.87428 -12.82981 -12.75011 -12.52534 -12.22609 -12.04137 -11.88964 -11.84303 -11.81404 -11.62401 -11.47102 -11.39950 -11.01075 -10.71281 -10.42176 -10.17148 -9.84428 -9.63648 -9.30761 -8.22118 -6.17622 0.67052 0.72614 1.28308 1.32014 1.37821 1.42974 2.01496 2.39051 2.46802 3.07905 3.22431 3.70888 4.00340 4.08351 4.12451 4.17487 4.23041 4.30596 4.31542 4.35733 4.45653 4.47801 4.50318 4.64329 4.66969 4.70691 4.76777 4.84483 4.86982 4.87229 4.92403 5.00714 5.07825 5.10910 5.18587 5.21746 5.32022 5.35426 5.38578 5.41044 5.47467 5.69745 5.75866 5.79180 5.80488 5.82533 5.92001 6.02231 6.33008 6.36415 6.80967 6.85512 7.45450 7.65536 8.95422 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.003651 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.003266 B = 7666.763475 C = 8384.846702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.086 4.086 4 C -0.116 4.116 5 C -0.110 4.110 6 C 0.137 3.863 7 H 0.046 0.954 8 C -0.155 4.155 9 N -0.720 5.720 10 C 0.509 3.491 11 O -0.562 6.562 12 C -0.112 4.112 13 C 0.048 3.952 14 H 0.036 0.964 15 C -0.459 4.459 16 H 0.033 0.967 17 C 0.024 3.976 18 N -0.953 5.953 19 Si 0.920 3.080 20 H -0.265 1.265 21 H -0.299 1.299 22 H -0.252 1.252 23 C -0.063 4.063 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.140 4.140 27 C -0.123 4.123 28 C -0.158 4.158 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.410 0.590 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.257 0.743 45 H 0.109 0.891 46 H 0.140 0.860 47 H 0.147 0.853 48 H 0.141 0.859 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.037 13.529 -7.768 20.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.189 4.189 3 C -0.123 4.123 4 C -0.154 4.154 5 C -0.147 4.147 6 C 0.032 3.968 7 H 0.064 0.936 8 C -0.213 4.213 9 N -0.375 5.375 10 C 0.296 3.704 11 O -0.439 6.439 12 C -0.152 4.152 13 C 0.029 3.971 14 H 0.054 0.946 15 C -0.497 4.497 16 H 0.052 0.948 17 C -0.172 4.172 18 N -0.595 5.595 19 Si 0.747 3.253 20 H -0.191 1.191 21 H -0.226 1.226 22 H -0.176 1.176 23 C -0.064 4.064 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.158 4.158 27 C -0.141 4.141 28 C -0.176 4.176 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.247 0.753 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.128 0.872 46 H 0.158 0.842 47 H 0.165 0.835 48 H 0.158 0.842 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.074 13.102 -7.788 19.445 hybrid contribution 0.924 -0.524 0.355 1.120 sum -11.150 12.579 -7.432 18.379 Atomic orbital electron populations 1.23997 0.95778 1.02544 1.00971 1.23136 0.96612 0.99029 1.00136 1.20735 0.97958 0.95157 0.98400 1.21512 0.97826 0.97453 0.98561 1.21817 0.97889 0.98106 0.96911 1.20961 0.93813 0.98012 0.83995 0.93611 1.22103 0.99814 0.97688 1.01695 1.45990 1.18174 1.65290 1.08051 1.20999 0.87124 0.75911 0.86335 1.90717 1.20838 1.46157 1.86194 1.21569 0.99054 1.02652 0.91897 1.18151 0.94446 0.95288 0.89221 0.94568 1.20783 0.99207 0.94219 1.35454 0.94833 1.25572 0.99634 0.95396 0.96567 1.70033 1.23486 1.16710 1.49283 0.86155 0.78530 0.80783 0.79790 1.19067 1.22638 1.17630 1.20523 0.94544 0.94238 0.97059 1.21012 0.95559 0.98890 0.98239 1.21411 1.00530 0.99118 0.93097 1.21345 0.96816 0.97833 0.99831 1.21343 0.95931 1.00167 0.96638 1.21216 1.00630 1.00773 0.95017 0.88328 0.87407 0.88464 0.90085 0.90177 0.94035 0.92768 0.88948 0.88993 0.90352 0.90482 0.95417 0.75338 0.87912 0.88920 0.93377 0.87241 0.84228 0.83493 0.84158 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.29 14.32 67.78 0.97 -2.32 16 2 C -0.17 -3.24 9.52 25.65 0.24 -2.99 16 3 C -0.09 -1.39 5.66 29.85 0.17 -1.22 16 4 C -0.12 -2.39 5.08 30.59 0.16 -2.24 16 5 C -0.11 -1.91 4.75 30.59 0.15 -1.76 16 6 C 0.14 3.60 2.57 44.99 0.12 3.72 16 7 H 0.05 1.60 7.58 -2.39 -0.02 1.58 16 8 C -0.15 -3.65 9.48 71.98 0.68 -2.96 16 9 N -0.72 -20.44 4.53 -442.51 -2.00 -22.45 16 10 C 0.51 20.33 7.54 87.66 0.66 20.99 16 11 O -0.56 -29.27 14.65 -3.01 -0.04 -29.31 16 12 C -0.11 -4.17 4.96 29.85 0.15 -4.02 16 13 C 0.05 2.26 1.21 -12.29 -0.01 2.24 16 14 H 0.04 1.84 4.70 -2.38 -0.01 1.83 16 15 C -0.46 -26.52 6.87 25.60 0.18 -26.35 16 16 H 0.03 2.13 8.06 -2.91 -0.02 2.10 16 17 C 0.02 1.51 5.47 84.65 0.46 1.98 16 18 N -0.95 -63.50 13.96 21.45 0.30 -63.20 16 19 Si 0.92 49.19 27.15 68.60 1.86 51.05 16 20 H -0.27 -13.48 7.11 99.48 0.71 -12.78 16 21 H -0.30 -16.15 7.11 99.48 0.71 -15.44 16 22 H -0.25 -12.88 6.06 99.48 0.60 -12.28 16 23 C -0.06 -2.61 4.55 -19.87 -0.09 -2.71 16 24 C -0.12 -4.51 8.87 22.27 0.20 -4.31 16 25 C -0.12 -3.82 10.05 22.27 0.22 -3.60 16 26 C -0.14 -3.94 10.05 22.27 0.22 -3.71 16 27 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 28 C -0.16 -5.94 9.43 22.27 0.21 -5.73 16 29 H 0.10 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.11 1.50 7.84 -2.91 -0.02 1.47 16 31 H 0.10 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.08 1.07 7.79 -2.38 -0.02 1.05 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.26 7.75 -2.38 -0.02 1.24 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.03 0.83 8.14 -2.38 -0.02 0.82 16 41 H 0.41 8.48 8.60 -92.71 -0.80 7.68 16 42 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 43 H 0.09 3.24 7.86 -2.39 -0.02 3.22 16 44 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 45 H 0.11 4.26 7.80 -2.91 -0.02 4.24 16 46 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 47 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 48 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 49 H 0.11 3.96 7.95 -2.91 -0.02 3.94 16 Total: -1.00 -79.34 400.66 5.02 -74.32 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.00 Total: 28.12 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 4.90 Total: -38.53 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -1.71 Total: -85.65 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.04 Total: -29.31 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 1.86 Total: 51.05 kcal Total: -79.34 5.02 -74.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356623698.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.519 kcal (2) G-P(sol) polarization free energy of solvation -79.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds