Wall clock time and date at job start Tue Mar 31 2020 10:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.45801 * 2 1 4 4 C 1.53040 * 109.46006 * 240.02589 * 2 1 3 5 5 C 1.53195 * 109.31132 * 178.60013 * 4 2 1 6 6 N 1.46918 * 108.76512 * 54.65926 * 5 4 2 7 7 C 1.34777 * 120.63174 * 126.40663 * 6 5 4 8 8 O 1.21280 * 120.00134 * 179.97438 * 7 6 5 9 9 C 1.50701 * 120.00033 * 359.97438 * 7 6 5 10 10 C 1.52993 * 109.47231 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47330 * 305.36970 * 10 9 7 12 12 C 1.50699 * 109.47069 * 65.36652 * 10 9 7 13 13 H 1.07999 * 120.00085 * 34.62802 * 12 10 9 14 14 C 1.37878 * 120.00063 * 214.61775 * 12 10 9 15 15 N 1.31516 * 120.00226 * 186.44927 * 14 12 10 16 16 Si 1.86804 * 119.99946 * 6.45023 * 14 12 10 17 17 H 1.48501 * 109.46974 * 85.01786 * 16 14 12 18 18 H 1.48497 * 109.46949 * 205.01624 * 16 14 12 19 19 H 1.48498 * 109.47285 * 325.01931 * 16 14 12 20 20 C 1.50701 * 109.47141 * 185.36955 * 10 9 7 21 21 C 1.38227 * 119.99941 * 296.35572 * 20 10 9 22 22 C 1.38234 * 120.00140 * 179.74324 * 21 20 10 23 23 C 1.38236 * 119.99860 * 0.53065 * 22 21 20 24 24 C 1.38237 * 119.99727 * 359.74811 * 23 22 21 25 25 C 1.38232 * 119.99843 * 116.63088 * 20 10 9 26 26 C 1.46927 * 118.73698 * 306.37831 * 6 5 4 27 27 C 1.53041 * 109.46065 * 119.97073 * 2 1 3 28 28 H 1.09008 * 109.49120 * 61.40530 * 27 2 1 29 29 C 1.52998 * 109.50100 * 301.34042 * 27 2 1 30 30 H 1.08991 * 109.46971 * 299.99636 * 1 2 3 31 31 H 1.08993 * 109.47248 * 60.00243 * 1 2 3 32 32 H 1.08998 * 109.46508 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.50042 * 298.56811 * 4 2 1 34 34 H 1.09007 * 109.49429 * 58.66500 * 4 2 1 35 35 H 1.09001 * 109.59693 * 294.86611 * 5 4 2 36 36 H 1.09006 * 109.69797 * 174.51002 * 5 4 2 37 37 H 1.09000 * 109.46994 * 300.00596 * 9 7 6 38 38 H 1.09000 * 109.46972 * 59.99887 * 9 7 6 39 39 H 0.96996 * 119.99986 * 180.02562 * 15 14 12 40 40 H 1.08006 * 120.00284 * 359.97438 * 21 20 10 41 41 H 1.08005 * 120.00454 * 180.29481 * 22 21 20 42 42 H 1.08000 * 120.00275 * 179.76703 * 23 22 21 43 43 H 1.08002 * 120.00125 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00204 * 0.02562 * 25 20 10 45 45 H 1.08991 * 109.59395 * 293.82391 * 26 6 5 46 46 H 1.09000 * 109.70176 * 173.46592 * 26 6 5 47 47 H 1.09004 * 109.46788 * 59.99834 * 29 27 2 48 48 H 1.08993 * 109.47324 * 179.97438 * 29 27 2 49 49 H 1.09001 * 109.46551 * 299.99982 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5715 -0.6884 -1.2643 6 7 4.0679 -1.2488 -0.0002 7 6 4.9622 -2.2572 -0.0003 8 8 5.3647 -2.7109 1.0499 9 6 5.4619 -2.8210 -1.3055 10 6 6.4595 -3.9468 -1.0261 11 1 7.2516 -3.5771 -0.3748 12 6 5.7487 -5.0920 -0.3522 13 1 4.7261 -5.3215 -0.6132 14 6 6.4039 -5.8471 0.5973 15 7 5.8306 -6.9219 1.0931 16 14 8.1059 -5.3435 1.1797 17 1 7.9801 -4.3422 2.2691 18 1 8.8293 -6.5375 1.6858 19 1 8.8612 -4.7503 0.0471 20 6 7.0580 -4.4215 -2.3251 21 6 6.2525 -5.0056 -3.2846 22 6 6.8005 -5.4363 -4.4784 23 6 8.1560 -5.2927 -4.7082 24 6 8.9626 -4.7138 -3.7463 25 6 8.4136 -4.2780 -2.5549 26 6 3.5715 -0.6887 1.2641 27 6 2.0399 -0.7209 1.2500 28 1 1.6974 -1.7556 1.2383 29 6 1.5028 -0.0192 2.4990 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6979 -1.7558 -1.2381 34 1 1.6573 -0.2209 -2.1398 35 1 3.9143 0.3411 -1.3673 36 1 3.9438 -1.2828 -2.0988 37 1 4.6212 -3.2144 -1.8770 38 1 5.9530 -2.0334 -1.8772 39 1 6.2914 -7.4529 1.7613 40 1 5.1941 -5.1222 -3.1031 41 1 6.1703 -5.8884 -5.2300 42 1 8.5849 -5.6326 -5.6393 43 1 10.0217 -4.6020 -3.9256 44 1 9.0438 -3.8260 -1.8032 45 1 3.9143 0.3408 1.3674 46 1 3.9417 -1.2827 2.0997 47 1 0.4131 -0.0399 2.4870 48 1 1.8658 -0.5332 3.3890 49 1 1.8465 1.0151 2.5107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356635426.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:20 Heat of formation + Delta-G solvation = -29.125918 kcal Electronic energy + Delta-G solvation = -27155.015038 eV Core-core repulsion = 23659.976896 eV Total energy + Delta-G solvation = -3495.038142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93825 -38.62900 -37.56908 -34.16431 -34.03655 -32.21845 -31.61280 -30.19126 -29.18863 -28.32796 -26.99115 -25.39141 -23.28585 -22.45010 -22.16106 -21.81123 -20.16854 -19.52342 -18.30084 -16.92639 -16.65351 -15.84932 -15.58897 -14.96054 -14.78934 -14.62392 -14.37221 -14.16061 -13.80828 -13.61308 -13.30479 -13.14522 -12.88491 -12.71106 -12.49087 -12.32300 -12.05813 -11.99594 -11.94316 -11.86800 -11.69063 -11.57494 -11.05218 -11.03667 -10.75375 -10.72163 -10.52449 -10.41584 -10.33041 -10.19243 -9.83631 -9.58177 -9.15408 -8.86085 -8.38362 -8.19302 -8.16873 -7.79601 -5.95919 -3.92210 2.11692 2.16774 3.39921 3.45800 3.48005 3.52078 3.55744 4.54394 4.60706 4.62037 4.69258 4.76326 4.99552 5.19743 5.28815 5.37005 5.42364 5.45407 5.48974 5.53602 5.56827 5.57474 5.62460 5.70888 5.72320 5.77953 5.86061 5.88366 5.93956 5.95880 5.99902 6.04767 6.09409 6.12736 6.22299 6.26126 6.28134 6.34893 6.46052 6.61595 6.70916 6.84086 6.96523 7.04688 7.16139 7.29474 7.59990 7.74595 7.84896 7.95254 8.55470 9.00031 9.03816 9.69609 11.17054 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.004334 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.046773 B = 6459.138166 C = 7657.267721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.068 0.932 4 C -0.131 4.131 5 C 0.111 3.889 6 N -0.628 5.628 7 C 0.518 3.482 8 O -0.501 6.501 9 C -0.115 4.115 10 C 0.056 3.944 11 H 0.049 0.951 12 C -0.486 4.486 13 H 0.070 0.930 14 C 0.085 3.915 15 N -0.899 5.899 16 Si 0.873 3.127 17 H -0.273 1.273 18 H -0.296 1.296 19 H -0.261 1.261 20 C -0.037 4.037 21 C -0.102 4.102 22 C -0.127 4.127 23 C -0.150 4.150 24 C -0.126 4.126 25 C -0.136 4.136 26 C 0.119 3.881 27 C -0.103 4.103 28 H 0.075 0.925 29 C -0.146 4.146 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.261 0.739 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.056 0.944 46 H 0.091 0.909 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.327 14.982 -6.897 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.086 0.914 4 C -0.170 4.170 5 C -0.013 4.013 6 N -0.365 5.365 7 C 0.306 3.694 8 O -0.373 6.373 9 C -0.156 4.156 10 C 0.036 3.964 11 H 0.067 0.933 12 C -0.523 4.523 13 H 0.088 0.912 14 C -0.117 4.117 15 N -0.537 5.537 16 Si 0.701 3.299 17 H -0.198 1.198 18 H -0.223 1.223 19 H -0.186 1.186 20 C -0.038 4.038 21 C -0.120 4.120 22 C -0.145 4.145 23 C -0.168 4.168 24 C -0.144 4.144 25 C -0.155 4.155 26 C -0.004 4.004 27 C -0.122 4.122 28 H 0.094 0.906 29 C -0.204 4.204 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.051 14.540 -6.167 16.913 hybrid contribution 0.805 0.028 0.353 0.879 sum -5.246 14.568 -5.815 16.539 Atomic orbital electron populations 1.21885 0.95332 1.01898 1.01412 1.21128 0.95463 0.99202 0.94569 0.91360 1.22002 0.95602 1.01620 0.97757 1.21621 0.93833 0.98812 0.87017 1.48230 1.45202 1.36994 1.06092 1.20844 0.78161 0.77886 0.92490 1.90724 1.56179 1.56926 1.33497 1.21690 1.00900 0.98850 0.94112 1.18134 0.94400 0.93730 0.90125 0.93333 1.20560 0.99641 1.11696 1.20380 0.91190 1.24880 0.97390 0.93991 0.95415 1.69897 1.38779 1.15514 1.29504 0.86934 0.85071 0.77888 0.80007 1.19827 1.22333 1.18593 1.20738 0.92982 0.94584 0.95488 1.20949 1.00239 0.98036 0.92742 1.21046 0.95033 1.00852 0.97617 1.20855 0.94181 1.02643 0.99121 1.20964 0.98785 1.00160 0.94526 1.21155 0.95494 1.01995 0.96819 1.21479 0.92627 0.98272 0.88023 1.21543 0.95575 1.00463 0.94617 0.90608 1.21819 1.00967 1.00240 0.97335 0.92452 0.92951 0.92668 0.91225 0.91096 0.92173 0.89514 0.89827 0.91480 0.92884 0.86339 0.87220 0.87454 0.87408 0.87047 0.92586 0.89088 0.92259 0.92458 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.81 37.16 0.33 -0.94 16 2 C -0.09 -0.84 2.23 -90.57 -0.20 -1.04 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.13 -1.35 5.36 -26.61 -0.14 -1.49 16 5 C 0.11 1.29 6.34 -3.71 -0.02 1.27 16 6 N -0.63 -9.81 2.97 -172.77 -0.51 -10.32 16 7 C 0.52 10.41 7.45 -10.98 -0.08 10.33 16 8 O -0.50 -12.54 14.41 5.56 0.08 -12.46 16 9 C -0.12 -2.18 3.29 -27.89 -0.09 -2.28 16 10 C 0.06 1.28 1.28 -92.93 -0.12 1.16 16 11 H 0.05 1.20 4.78 -51.93 -0.25 0.95 16 12 C -0.49 -13.46 6.94 -34.44 -0.24 -13.69 16 13 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 14 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 15 N -0.90 -28.34 13.96 55.43 0.77 -27.56 16 16 Si 0.87 23.06 27.04 -169.99 -4.60 18.47 16 17 H -0.27 -7.39 7.11 56.52 0.40 -6.99 16 18 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 19 H -0.26 -6.39 5.14 56.52 0.29 -6.10 16 20 C -0.04 -0.79 4.77 -104.63 -0.50 -1.29 16 21 C -0.10 -1.99 8.87 -39.59 -0.35 -2.34 16 22 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 23 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 24 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 25 C -0.14 -2.71 9.13 -39.58 -0.36 -3.07 16 26 C 0.12 1.69 5.71 -3.71 -0.02 1.67 16 27 C -0.10 -1.21 2.41 -90.50 -0.22 -1.43 16 28 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 29 C -0.15 -1.44 8.81 37.16 0.33 -1.11 16 30 H 0.06 0.45 6.40 -51.93 -0.33 0.12 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 37 H 0.08 1.49 7.35 -51.93 -0.38 1.11 16 38 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 39 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 40 H 0.12 2.29 7.77 -52.48 -0.41 1.88 16 41 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.11 2.19 6.95 -52.49 -0.36 1.82 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.54 7.01 -51.93 -0.36 1.18 16 47 H 0.06 0.52 6.40 -51.93 -0.33 0.19 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -33.40 377.26 -9.87 -43.28 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.32 Total: 2.74 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -2.99 Total: -19.82 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.26 Total: -37.89 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.60 Total: 18.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.40 -9.87 -43.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356635426.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.154 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds