Wall clock time and date at job start Tue Mar 31 2020 10:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.45801 * 2 1 4 4 C 1.53040 * 109.46006 * 240.02589 * 2 1 3 5 5 C 1.53195 * 109.31132 * 178.60013 * 4 2 1 6 6 N 1.46918 * 108.76512 * 54.65926 * 5 4 2 7 7 C 1.34777 * 120.63174 * 126.40663 * 6 5 4 8 8 O 1.21280 * 120.00134 * 179.97438 * 7 6 5 9 9 C 1.50701 * 120.00033 * 359.97438 * 7 6 5 10 10 C 1.52993 * 109.47231 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47330 * 305.36970 * 10 9 7 12 12 C 1.50699 * 109.47069 * 65.36652 * 10 9 7 13 13 H 1.07999 * 120.00085 * 34.62802 * 12 10 9 14 14 C 1.37878 * 120.00063 * 214.61775 * 12 10 9 15 15 N 1.31516 * 120.00226 * 186.44927 * 14 12 10 16 16 Si 1.86804 * 119.99946 * 6.45023 * 14 12 10 17 17 H 1.48501 * 109.46974 * 85.01786 * 16 14 12 18 18 H 1.48497 * 109.46949 * 205.01624 * 16 14 12 19 19 H 1.48498 * 109.47285 * 325.01931 * 16 14 12 20 20 C 1.50701 * 109.47141 * 185.36955 * 10 9 7 21 21 C 1.38227 * 119.99941 * 296.35572 * 20 10 9 22 22 C 1.38234 * 120.00140 * 179.74324 * 21 20 10 23 23 C 1.38236 * 119.99860 * 0.53065 * 22 21 20 24 24 C 1.38237 * 119.99727 * 359.74811 * 23 22 21 25 25 C 1.38232 * 119.99843 * 116.63088 * 20 10 9 26 26 C 1.46927 * 118.73698 * 306.37831 * 6 5 4 27 27 C 1.53041 * 109.46065 * 119.97073 * 2 1 3 28 28 H 1.09008 * 109.49120 * 61.40530 * 27 2 1 29 29 C 1.52998 * 109.50100 * 301.34042 * 27 2 1 30 30 H 1.08991 * 109.46971 * 299.99636 * 1 2 3 31 31 H 1.08993 * 109.47248 * 60.00243 * 1 2 3 32 32 H 1.08998 * 109.46508 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.50042 * 298.56811 * 4 2 1 34 34 H 1.09007 * 109.49429 * 58.66500 * 4 2 1 35 35 H 1.09001 * 109.59693 * 294.86611 * 5 4 2 36 36 H 1.09006 * 109.69797 * 174.51002 * 5 4 2 37 37 H 1.09000 * 109.46994 * 300.00596 * 9 7 6 38 38 H 1.09000 * 109.46972 * 59.99887 * 9 7 6 39 39 H 0.96996 * 119.99986 * 180.02562 * 15 14 12 40 40 H 1.08006 * 120.00284 * 359.97438 * 21 20 10 41 41 H 1.08005 * 120.00454 * 180.29481 * 22 21 20 42 42 H 1.08000 * 120.00275 * 179.76703 * 23 22 21 43 43 H 1.08002 * 120.00125 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00204 * 0.02562 * 25 20 10 45 45 H 1.08991 * 109.59395 * 293.82391 * 26 6 5 46 46 H 1.09000 * 109.70176 * 173.46592 * 26 6 5 47 47 H 1.09004 * 109.46788 * 59.99834 * 29 27 2 48 48 H 1.08993 * 109.47324 * 179.97438 * 29 27 2 49 49 H 1.09001 * 109.46551 * 299.99982 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2500 5 6 3.5715 -0.6884 -1.2643 6 7 4.0679 -1.2488 -0.0002 7 6 4.9622 -2.2572 -0.0003 8 8 5.3647 -2.7109 1.0499 9 6 5.4619 -2.8210 -1.3055 10 6 6.4595 -3.9468 -1.0261 11 1 7.2516 -3.5771 -0.3748 12 6 5.7487 -5.0920 -0.3522 13 1 4.7261 -5.3215 -0.6132 14 6 6.4039 -5.8471 0.5973 15 7 5.8306 -6.9219 1.0931 16 14 8.1059 -5.3435 1.1797 17 1 7.9801 -4.3422 2.2691 18 1 8.8293 -6.5375 1.6858 19 1 8.8612 -4.7503 0.0471 20 6 7.0580 -4.4215 -2.3251 21 6 6.2525 -5.0056 -3.2846 22 6 6.8005 -5.4363 -4.4784 23 6 8.1560 -5.2927 -4.7082 24 6 8.9626 -4.7138 -3.7463 25 6 8.4136 -4.2780 -2.5549 26 6 3.5715 -0.6887 1.2641 27 6 2.0399 -0.7209 1.2500 28 1 1.6974 -1.7556 1.2383 29 6 1.5028 -0.0192 2.4990 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6979 -1.7558 -1.2381 34 1 1.6573 -0.2209 -2.1398 35 1 3.9143 0.3411 -1.3673 36 1 3.9438 -1.2828 -2.0988 37 1 4.6212 -3.2144 -1.8770 38 1 5.9530 -2.0334 -1.8772 39 1 6.2914 -7.4529 1.7613 40 1 5.1941 -5.1222 -3.1031 41 1 6.1703 -5.8884 -5.2300 42 1 8.5849 -5.6326 -5.6393 43 1 10.0217 -4.6020 -3.9256 44 1 9.0438 -3.8260 -1.8032 45 1 3.9143 0.3408 1.3674 46 1 3.9417 -1.2827 2.0997 47 1 0.4131 -0.0399 2.4870 48 1 1.8658 -0.5332 3.3890 49 1 1.8465 1.0151 2.5107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356635426.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:19 Heat of formation + Delta-G solvation = -48.017478 kcal Electronic energy + Delta-G solvation = -27155.834237 eV Core-core repulsion = 23659.976896 eV Total energy + Delta-G solvation = -3495.857341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.26374 -40.04003 -38.88571 -35.89832 -35.28765 -33.74485 -33.13726 -31.60428 -30.61349 -29.29890 -28.42454 -26.92548 -24.60693 -23.85031 -23.25812 -23.11572 -21.50340 -20.73565 -19.70652 -19.03577 -18.11891 -17.23379 -16.95081 -16.47732 -16.21509 -15.74924 -15.66256 -15.40693 -15.26118 -14.88466 -14.69477 -14.47659 -14.28596 -14.11399 -13.92532 -13.82940 -13.50482 -13.30135 -13.05973 -12.86129 -12.82552 -12.72633 -12.65328 -12.52725 -12.06885 -11.96337 -11.91683 -11.80620 -11.69747 -11.47598 -11.31412 -11.14525 -11.06222 -10.63533 -10.46027 -9.61609 -9.47528 -9.30097 -8.24277 -6.19845 0.68831 0.73690 1.28121 1.36907 1.39239 1.88468 2.18895 2.39670 3.07494 3.23453 3.66570 3.81470 3.83569 3.99585 4.08570 4.11979 4.29539 4.31430 4.33732 4.42182 4.43382 4.48433 4.55215 4.61006 4.63638 4.68113 4.79362 4.80578 4.85366 4.86594 4.87737 4.96290 5.05427 5.07235 5.11300 5.17479 5.19580 5.24153 5.30585 5.37896 5.40655 5.48846 5.58298 5.66834 5.76511 5.77415 5.83163 6.02632 6.32121 6.35986 6.57839 6.78511 7.43621 7.48277 8.92905 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013824 B = 0.004334 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.046773 B = 6459.138166 C = 7657.267721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 H 0.088 0.912 4 C -0.128 4.128 5 C 0.102 3.898 6 N -0.621 5.621 7 C 0.508 3.492 8 O -0.566 6.566 9 C -0.107 4.107 10 C 0.057 3.943 11 H 0.030 0.970 12 C -0.462 4.462 13 H 0.032 0.968 14 C 0.023 3.977 15 N -0.953 5.953 16 Si 0.922 3.078 17 H -0.289 1.289 18 H -0.296 1.296 19 H -0.230 1.230 20 C -0.062 4.062 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.139 4.139 24 C -0.123 4.123 25 C -0.154 4.154 26 C 0.115 3.885 27 C -0.098 4.098 28 H 0.042 0.958 29 C -0.141 4.141 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.258 0.742 40 H 0.108 0.892 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.073 0.927 48 H 0.043 0.957 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 17.704 -10.435 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 H 0.106 0.894 4 C -0.166 4.166 5 C -0.020 4.020 6 N -0.356 5.356 7 C 0.298 3.702 8 O -0.444 6.444 9 C -0.147 4.147 10 C 0.037 3.963 11 H 0.049 0.951 12 C -0.500 4.500 13 H 0.050 0.950 14 C -0.173 4.173 15 N -0.595 5.595 16 Si 0.749 3.251 17 H -0.216 1.216 18 H -0.223 1.223 19 H -0.153 1.153 20 C -0.062 4.062 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.157 4.157 24 C -0.141 4.141 25 C -0.172 4.172 26 C -0.008 4.008 27 C -0.118 4.118 28 H 0.061 0.939 29 C -0.199 4.199 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.126 0.874 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.158 0.842 44 H 0.126 0.874 45 H 0.100 0.900 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.062 0.938 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.545 17.324 -9.768 20.647 hybrid contribution 0.545 -0.734 1.308 1.596 sum -5.000 16.590 -8.460 19.283 Atomic orbital electron populations 1.21856 0.94104 1.01470 1.02752 1.21130 0.96429 0.99563 0.92766 0.89401 1.22005 0.94386 1.00827 0.99431 1.21995 0.94921 1.00159 0.84916 1.48283 1.43524 1.35468 1.08293 1.21137 0.78647 0.78474 0.91985 1.90697 1.58880 1.59439 1.35362 1.21583 1.00462 0.98583 0.94087 1.18009 0.94354 0.93062 0.90838 0.95137 1.20767 0.97989 1.11903 1.19336 0.95019 1.25601 1.00950 0.94363 0.96376 1.70035 1.40591 1.17492 1.31393 0.86131 0.81998 0.77033 0.79904 1.21603 1.22345 1.15323 1.20455 0.93992 0.96676 0.95106 1.20984 0.99828 0.98976 0.93900 1.21393 0.96123 0.99713 0.96957 1.21340 0.93594 1.00620 1.00171 1.21333 1.00606 0.98837 0.93348 1.21253 0.94744 1.02959 0.98242 1.21604 0.94368 0.98530 0.86265 1.21490 0.93637 0.99395 0.97259 0.93896 1.21793 1.01756 1.00749 0.95593 0.91533 0.91215 0.94010 0.93517 0.87911 0.89167 0.89063 0.88975 0.87899 0.93317 0.87423 0.84248 0.83496 0.84203 0.87423 0.90017 0.92967 0.90852 0.93791 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.81 71.98 0.63 -1.49 16 2 C -0.08 -1.39 2.23 -10.76 -0.02 -1.41 16 3 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.13 -2.34 5.36 30.67 0.16 -2.18 16 5 C 0.10 2.15 6.34 86.36 0.55 2.70 16 6 N -0.62 -19.47 2.97 -818.91 -2.43 -21.90 16 7 C 0.51 21.23 7.45 87.66 0.65 21.88 16 8 O -0.57 -30.25 14.41 -3.03 -0.04 -30.29 16 9 C -0.11 -4.10 3.29 29.85 0.10 -4.00 16 10 C 0.06 2.67 1.28 -12.29 -0.02 2.66 16 11 H 0.03 1.54 4.78 -2.39 -0.01 1.53 16 12 C -0.46 -27.00 6.94 25.60 0.18 -26.83 16 13 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 14 C 0.02 1.44 5.47 84.65 0.46 1.91 16 15 N -0.95 -63.78 13.96 21.45 0.30 -63.48 16 16 Si 0.92 49.69 27.04 68.60 1.85 51.54 16 17 H -0.29 -16.21 7.11 99.48 0.71 -15.51 16 18 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 19 H -0.23 -11.06 5.14 99.48 0.51 -10.55 16 20 C -0.06 -2.58 4.77 -19.87 -0.09 -2.67 16 21 C -0.12 -4.53 8.87 22.27 0.20 -4.33 16 22 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 23 C -0.14 -3.91 10.05 22.27 0.22 -3.68 16 24 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 25 C -0.15 -5.81 9.13 22.27 0.20 -5.61 16 26 C 0.11 3.34 5.71 86.36 0.49 3.83 16 27 C -0.10 -2.32 2.41 -10.72 -0.03 -2.35 16 28 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 29 C -0.14 -2.66 8.81 71.98 0.63 -2.03 16 30 H 0.07 0.86 6.40 -2.39 -0.02 0.85 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.85 5.93 -2.38 -0.01 1.84 16 37 H 0.09 3.33 7.35 -2.39 -0.02 3.31 16 38 H 0.10 3.16 7.94 -2.39 -0.02 3.14 16 39 H 0.26 16.48 8.31 -92.71 -0.77 15.71 16 40 H 0.11 4.23 7.77 -2.91 -0.02 4.20 16 41 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 42 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 43 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 44 H 0.11 4.06 6.95 -2.91 -0.02 4.04 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.05 1.93 7.01 -2.39 -0.02 1.91 16 47 H 0.07 1.18 6.40 -2.39 -0.02 1.17 16 48 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -80.05 377.26 5.17 -74.88 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.71 Total: 20.02 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 4.78 Total: -30.76 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -2.13 Total: -85.39 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.04 Total: -30.29 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 1.85 Total: 51.54 kcal Total: -80.05 5.17 -74.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356635426.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.859 kcal (2) G-P(sol) polarization free energy of solvation -80.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds