Wall clock time and date at job start Tue Mar 31 2020 10:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46106 * 2 1 4 4 C 1.53049 * 109.45072 * 240.03243 * 2 1 3 5 5 C 1.53617 * 109.24205 * 178.49945 * 4 2 1 6 6 N 1.46928 * 108.54333 * 54.86047 * 5 4 2 7 7 C 1.34775 * 120.62930 * 126.37101 * 6 5 4 8 8 O 1.21285 * 119.99811 * 179.71836 * 7 6 5 9 9 C 1.50695 * 120.00245 * 359.71398 * 7 6 5 10 10 C 1.52998 * 109.46939 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47319 * 306.00337 * 10 9 7 12 12 C 1.50703 * 109.47284 * 66.00607 * 10 9 7 13 13 H 1.07998 * 119.99546 * 35.43266 * 12 10 9 14 14 C 1.37872 * 120.00016 * 215.43442 * 12 10 9 15 15 N 1.31517 * 119.99775 * 175.73164 * 14 12 10 16 16 Si 1.86800 * 120.00183 * 355.72704 * 14 12 10 17 17 H 1.48500 * 109.47148 * 94.38783 * 16 14 12 18 18 H 1.48497 * 109.47279 * 214.38641 * 16 14 12 19 19 H 1.48500 * 109.47082 * 334.38662 * 16 14 12 20 20 C 1.50708 * 109.46878 * 186.00225 * 10 9 7 21 21 C 1.38237 * 119.99703 * 113.56768 * 20 10 9 22 22 C 1.38233 * 119.99983 * 179.97438 * 21 20 10 23 23 C 1.38236 * 119.99828 * 359.97438 * 22 21 20 24 24 C 1.38235 * 119.99984 * 0.07173 * 23 22 21 25 25 C 1.38232 * 120.00240 * 359.90914 * 24 23 22 26 26 C 1.46924 * 118.73480 * 306.08724 * 6 5 4 27 27 C 1.53038 * 109.46054 * 119.97537 * 2 1 3 28 28 H 1.09006 * 109.49545 * 301.32408 * 27 2 1 29 29 C 1.53005 * 109.49716 * 61.41797 * 27 2 1 30 30 H 1.08990 * 109.47528 * 300.03036 * 1 2 3 31 31 H 1.09010 * 109.47196 * 60.02747 * 1 2 3 32 32 H 1.09006 * 109.47593 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.49508 * 298.57589 * 4 2 1 34 34 H 1.09001 * 109.49090 * 58.63967 * 4 2 1 35 35 H 1.09001 * 109.74033 * 295.11695 * 5 4 2 36 36 H 1.08999 * 109.66509 * 174.55033 * 5 4 2 37 37 H 1.09001 * 109.46905 * 60.00449 * 9 7 6 38 38 H 1.08995 * 109.47133 * 300.00374 * 9 7 6 39 39 H 0.97001 * 119.99842 * 180.02562 * 15 14 12 40 40 H 1.08000 * 120.00263 * 359.97438 * 21 20 10 41 41 H 1.07997 * 120.00368 * 179.71757 * 22 21 20 42 42 H 1.07998 * 120.00173 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.00060 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00265 * 180.02562 * 25 24 23 45 45 H 1.09006 * 109.58313 * 173.65006 * 26 6 5 46 46 H 1.09003 * 109.59356 * 294.07514 * 26 6 5 47 47 H 1.09007 * 109.46829 * 179.84302 * 29 27 2 48 48 H 1.08998 * 109.46977 * 299.83917 * 29 27 2 49 49 H 1.08998 * 109.47395 * 59.84270 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2502 5 6 3.5753 -0.6852 -1.2645 6 7 4.0675 -1.2495 -0.0003 7 6 4.9616 -2.2580 -0.0005 8 8 5.3641 -2.7117 1.0498 9 6 5.4610 -2.8220 -1.3056 10 6 6.4585 -3.9480 -1.0262 11 1 7.2446 -3.5815 -0.3659 12 6 5.7444 -5.0994 -0.3663 13 1 4.7288 -5.3368 -0.6466 14 6 6.3876 -5.8495 0.5952 15 7 5.7381 -6.8002 1.2309 16 14 8.1815 -5.5157 0.9950 17 1 8.2666 -4.5869 2.1506 18 1 8.8587 -6.7926 1.3354 19 1 8.8453 -4.9021 -0.1832 20 6 7.0683 -4.4124 -2.3238 21 6 8.4134 -4.2075 -2.5676 22 6 8.9729 -4.6340 -3.7576 23 6 8.1873 -5.2657 -4.7034 24 6 6.8420 -5.4697 -4.4599 25 6 6.2826 -5.0436 -3.2698 26 6 3.5713 -0.6891 1.2640 27 6 2.0398 -0.7209 1.2499 28 1 1.6573 -0.2209 2.1398 29 6 1.5593 -2.1735 1.2334 30 1 -0.3634 0.5142 0.8896 31 1 -0.3634 0.5134 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6973 -1.7557 -1.2384 34 1 1.6565 -0.2210 -2.1398 35 1 3.9188 0.3445 -1.3634 36 1 3.9482 -1.2787 -2.0992 37 1 5.9522 -2.0346 -1.8774 38 1 4.6203 -3.2153 -1.8769 39 1 6.1905 -7.3277 1.9076 40 1 9.0273 -3.7143 -1.8285 41 1 10.0228 -4.4699 -3.9501 42 1 8.6243 -5.5985 -5.6333 43 1 6.2281 -5.9629 -5.1991 44 1 5.2316 -5.2033 -3.0794 45 1 3.9416 -1.2852 2.0981 46 1 3.9145 0.3404 1.3672 47 1 1.9251 -2.6873 2.1225 48 1 0.4696 -2.1956 1.2234 49 1 1.9411 -2.6724 0.3426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356635427.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:23 Heat of formation + Delta-G solvation = -25.150149 kcal Electronic energy + Delta-G solvation = -27461.446523 eV Core-core repulsion = 23966.580784 eV Total energy + Delta-G solvation = -3494.865739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.04711 -38.65650 -37.55983 -34.13719 -33.84973 -31.90944 -31.53994 -30.20039 -29.11736 -28.40470 -26.95336 -25.45630 -23.27807 -22.83999 -22.30265 -21.81587 -20.09593 -18.96095 -18.01374 -16.91519 -16.68463 -15.90100 -15.35150 -15.16663 -15.01014 -14.55102 -14.26210 -14.13987 -13.77926 -13.58555 -13.37885 -13.08507 -12.76447 -12.71847 -12.56006 -12.32782 -12.23041 -11.98353 -11.85454 -11.68921 -11.51646 -11.34088 -11.07099 -10.94807 -10.70452 -10.62369 -10.52008 -10.32751 -10.26577 -10.20058 -9.83950 -9.59303 -9.10502 -8.86094 -8.39951 -8.18683 -8.13550 -7.79219 -5.94966 -3.91708 2.10773 2.15749 3.43457 3.46496 3.50405 3.52914 3.53409 4.53414 4.61260 4.67998 4.70769 4.79361 5.09952 5.23722 5.29477 5.34433 5.43247 5.48221 5.52903 5.56473 5.59113 5.61765 5.70003 5.74631 5.79727 5.88400 5.93960 5.96460 5.97594 6.00311 6.03566 6.06612 6.10993 6.25784 6.26002 6.31272 6.34291 6.35392 6.61543 6.64435 6.70234 6.84008 6.99202 7.05628 7.15370 7.28789 7.59933 7.75100 7.85253 7.98375 8.56048 9.02501 9.05131 9.70255 11.18075 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.004566 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.319716 B = 6130.571550 C = 7241.398679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.133 4.133 5 C 0.111 3.889 6 N -0.625 5.625 7 C 0.518 3.482 8 O -0.500 6.500 9 C -0.114 4.114 10 C 0.057 3.943 11 H 0.049 0.951 12 C -0.486 4.486 13 H 0.070 0.930 14 C 0.087 3.913 15 N -0.899 5.899 16 Si 0.867 3.133 17 H -0.278 1.278 18 H -0.295 1.295 19 H -0.253 1.253 20 C -0.040 4.040 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.149 4.149 24 C -0.128 4.128 25 C -0.101 4.101 26 C 0.117 3.883 27 C -0.100 4.100 28 H 0.073 0.927 29 C -0.146 4.146 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.261 0.739 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.091 0.909 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.017 14.073 -7.596 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.172 4.172 5 C -0.013 4.013 6 N -0.363 5.363 7 C 0.306 3.694 8 O -0.372 6.372 9 C -0.155 4.155 10 C 0.038 3.962 11 H 0.067 0.933 12 C -0.523 4.523 13 H 0.088 0.912 14 C -0.116 4.116 15 N -0.536 5.536 16 Si 0.695 3.305 17 H -0.204 1.204 18 H -0.222 1.222 19 H -0.177 1.177 20 C -0.040 4.040 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.168 4.168 24 C -0.146 4.146 25 C -0.119 4.119 26 C -0.006 4.006 27 C -0.119 4.119 28 H 0.092 0.908 29 C -0.203 4.203 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.751 13.639 -6.854 16.312 hybrid contribution 0.869 -0.032 0.295 0.918 sum -4.882 13.607 -6.559 15.874 Atomic orbital electron populations 1.21877 0.95369 1.02043 1.01198 1.21098 0.95425 0.98940 0.94915 0.91479 1.22120 0.95574 1.01886 0.97584 1.21700 0.93835 0.98706 0.87027 1.48186 1.45248 1.36839 1.06004 1.20807 0.78187 0.77942 0.92440 1.90732 1.56112 1.56896 1.33457 1.21672 1.00830 0.98778 0.94172 1.18133 0.94310 0.93879 0.89927 0.93328 1.20560 1.00158 1.11844 1.19762 0.91229 1.24862 0.97526 0.94388 0.94784 1.69893 1.36583 1.22085 1.25059 0.87007 0.86401 0.77433 0.79708 1.20360 1.22158 1.17735 1.20783 0.93098 0.94557 0.95585 1.21153 0.95572 1.01832 0.96695 1.20961 0.98847 1.00121 0.94656 1.20856 0.94414 1.02307 0.99188 1.21050 0.95075 1.00864 0.97658 1.20968 1.00355 0.97784 0.92757 1.21482 0.92764 0.98122 0.88189 1.21503 0.95579 0.97158 0.97657 0.90819 1.21856 1.00033 0.95349 1.03049 0.92932 0.92995 0.92258 0.90804 0.91321 0.92186 0.89581 0.91556 0.89909 0.92951 0.87074 0.87439 0.87473 0.87228 0.86252 0.89022 0.92652 0.92579 0.93042 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.87 37.16 0.33 -0.95 16 2 C -0.09 -0.84 2.45 -90.58 -0.22 -1.06 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.13 -1.37 5.03 -26.39 -0.13 -1.50 16 5 C 0.11 1.29 6.37 -3.49 -0.02 1.26 16 6 N -0.63 -9.62 2.40 -172.51 -0.41 -10.04 16 7 C 0.52 10.32 7.45 -10.99 -0.08 10.23 16 8 O -0.50 -12.46 14.43 5.55 0.08 -12.38 16 9 C -0.11 -2.15 3.31 -27.89 -0.09 -2.24 16 10 C 0.06 1.30 1.17 -92.92 -0.11 1.19 16 11 H 0.05 1.19 5.06 -51.93 -0.26 0.93 16 12 C -0.49 -13.33 6.87 -34.44 -0.24 -13.56 16 13 H 0.07 2.07 8.06 -52.49 -0.42 1.64 16 14 C 0.09 2.55 5.47 -17.82 -0.10 2.46 16 15 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 16 Si 0.87 22.67 26.95 -169.99 -4.58 18.09 16 17 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 18 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 19 H -0.25 -6.09 4.53 56.52 0.26 -5.83 16 20 C -0.04 -0.83 4.57 -104.62 -0.48 -1.31 16 21 C -0.13 -2.63 8.55 -39.58 -0.34 -2.97 16 22 C -0.13 -2.19 10.05 -39.58 -0.40 -2.58 16 23 C -0.15 -2.43 10.05 -39.58 -0.40 -2.82 16 24 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 25 C -0.10 -1.95 8.92 -39.59 -0.35 -2.30 16 26 C 0.12 1.66 5.82 -3.71 -0.02 1.64 16 27 C -0.10 -1.18 2.72 -90.50 -0.25 -1.42 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 C -0.15 -2.01 8.38 37.16 0.31 -1.70 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.55 6.47 -51.93 -0.34 0.21 16 33 H 0.07 0.87 6.33 -51.93 -0.33 0.54 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 37 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 38 H 0.08 1.47 7.60 -51.93 -0.39 1.07 16 39 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 40 H 0.11 2.14 7.09 -52.49 -0.37 1.77 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.12 2.30 7.88 -52.49 -0.41 1.89 16 45 H 0.09 1.55 7.01 -51.93 -0.36 1.19 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 48 H 0.05 0.61 6.47 -51.93 -0.34 0.27 16 49 H 0.06 1.00 5.97 -51.93 -0.31 0.69 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -33.07 372.01 -9.71 -42.78 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.19 Total: 3.61 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -2.98 Total: -20.22 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.36 Total: -37.48 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.08 Total: -12.38 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.58 Total: 18.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.07 -9.71 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356635427.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.626 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds