Wall clock time and date at job start Tue Mar 31 2020 10:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46106 * 2 1 4 4 C 1.53049 * 109.45072 * 240.03243 * 2 1 3 5 5 C 1.53617 * 109.24205 * 178.49945 * 4 2 1 6 6 N 1.46928 * 108.54333 * 54.86047 * 5 4 2 7 7 C 1.34775 * 120.62930 * 126.37101 * 6 5 4 8 8 O 1.21285 * 119.99811 * 179.71836 * 7 6 5 9 9 C 1.50695 * 120.00245 * 359.71398 * 7 6 5 10 10 C 1.52998 * 109.46939 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47319 * 306.00337 * 10 9 7 12 12 C 1.50703 * 109.47284 * 66.00607 * 10 9 7 13 13 H 1.07998 * 119.99546 * 35.43266 * 12 10 9 14 14 C 1.37872 * 120.00016 * 215.43442 * 12 10 9 15 15 N 1.31517 * 119.99775 * 175.73164 * 14 12 10 16 16 Si 1.86800 * 120.00183 * 355.72704 * 14 12 10 17 17 H 1.48500 * 109.47148 * 94.38783 * 16 14 12 18 18 H 1.48497 * 109.47279 * 214.38641 * 16 14 12 19 19 H 1.48500 * 109.47082 * 334.38662 * 16 14 12 20 20 C 1.50708 * 109.46878 * 186.00225 * 10 9 7 21 21 C 1.38237 * 119.99703 * 113.56768 * 20 10 9 22 22 C 1.38233 * 119.99983 * 179.97438 * 21 20 10 23 23 C 1.38236 * 119.99828 * 359.97438 * 22 21 20 24 24 C 1.38235 * 119.99984 * 0.07173 * 23 22 21 25 25 C 1.38232 * 120.00240 * 359.90914 * 24 23 22 26 26 C 1.46924 * 118.73480 * 306.08724 * 6 5 4 27 27 C 1.53038 * 109.46054 * 119.97537 * 2 1 3 28 28 H 1.09006 * 109.49545 * 301.32408 * 27 2 1 29 29 C 1.53005 * 109.49716 * 61.41797 * 27 2 1 30 30 H 1.08990 * 109.47528 * 300.03036 * 1 2 3 31 31 H 1.09010 * 109.47196 * 60.02747 * 1 2 3 32 32 H 1.09006 * 109.47593 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.49508 * 298.57589 * 4 2 1 34 34 H 1.09001 * 109.49090 * 58.63967 * 4 2 1 35 35 H 1.09001 * 109.74033 * 295.11695 * 5 4 2 36 36 H 1.08999 * 109.66509 * 174.55033 * 5 4 2 37 37 H 1.09001 * 109.46905 * 60.00449 * 9 7 6 38 38 H 1.08995 * 109.47133 * 300.00374 * 9 7 6 39 39 H 0.97001 * 119.99842 * 180.02562 * 15 14 12 40 40 H 1.08000 * 120.00263 * 359.97438 * 21 20 10 41 41 H 1.07997 * 120.00368 * 179.71757 * 22 21 20 42 42 H 1.07998 * 120.00173 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.00060 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.00265 * 180.02562 * 25 24 23 45 45 H 1.09006 * 109.58313 * 173.65006 * 26 6 5 46 46 H 1.09003 * 109.59356 * 294.07514 * 26 6 5 47 47 H 1.09007 * 109.46829 * 179.84302 * 29 27 2 48 48 H 1.08998 * 109.46977 * 299.83917 * 29 27 2 49 49 H 1.08998 * 109.47395 * 59.84270 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2502 5 6 3.5753 -0.6852 -1.2645 6 7 4.0675 -1.2495 -0.0003 7 6 4.9616 -2.2580 -0.0005 8 8 5.3641 -2.7117 1.0498 9 6 5.4610 -2.8220 -1.3056 10 6 6.4585 -3.9480 -1.0262 11 1 7.2446 -3.5815 -0.3659 12 6 5.7444 -5.0994 -0.3663 13 1 4.7288 -5.3368 -0.6466 14 6 6.3876 -5.8495 0.5952 15 7 5.7381 -6.8002 1.2309 16 14 8.1815 -5.5157 0.9950 17 1 8.2666 -4.5869 2.1506 18 1 8.8587 -6.7926 1.3354 19 1 8.8453 -4.9021 -0.1832 20 6 7.0683 -4.4124 -2.3238 21 6 8.4134 -4.2075 -2.5676 22 6 8.9729 -4.6340 -3.7576 23 6 8.1873 -5.2657 -4.7034 24 6 6.8420 -5.4697 -4.4599 25 6 6.2826 -5.0436 -3.2698 26 6 3.5713 -0.6891 1.2640 27 6 2.0398 -0.7209 1.2499 28 1 1.6573 -0.2209 2.1398 29 6 1.5593 -2.1735 1.2334 30 1 -0.3634 0.5142 0.8896 31 1 -0.3634 0.5134 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6973 -1.7557 -1.2384 34 1 1.6565 -0.2210 -2.1398 35 1 3.9188 0.3445 -1.3634 36 1 3.9482 -1.2787 -2.0992 37 1 5.9522 -2.0346 -1.8774 38 1 4.6203 -3.2153 -1.8769 39 1 6.1905 -7.3277 1.9076 40 1 9.0273 -3.7143 -1.8285 41 1 10.0228 -4.4699 -3.9501 42 1 8.6243 -5.5985 -5.6333 43 1 6.2281 -5.9629 -5.1991 44 1 5.2316 -5.2033 -3.0794 45 1 3.9416 -1.2852 2.0981 46 1 3.9145 0.3404 1.3672 47 1 1.9251 -2.6873 2.1225 48 1 0.4696 -2.1956 1.2234 49 1 1.9411 -2.6724 0.3426 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356635427.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:22 Heat of formation + Delta-G solvation = -43.604449 kcal Electronic energy + Delta-G solvation = -27462.246761 eV Core-core repulsion = 23966.580784 eV Total energy + Delta-G solvation = -3495.665978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.33729 -40.06787 -38.90951 -35.88144 -35.10260 -33.72460 -32.80693 -31.59930 -30.53963 -29.37245 -28.45869 -27.07415 -24.53033 -24.09252 -23.50292 -23.20540 -21.52947 -20.37507 -19.13167 -19.00253 -18.14033 -17.26305 -16.79709 -16.53783 -16.18742 -15.98320 -15.75831 -15.37099 -15.17769 -14.83413 -14.76246 -14.39906 -14.35377 -14.13131 -13.93076 -13.75772 -13.54441 -13.31669 -13.11444 -12.95346 -12.85728 -12.67133 -12.53439 -12.35737 -12.03255 -11.94121 -11.88470 -11.77082 -11.61253 -11.49035 -11.21364 -11.15860 -11.02070 -10.68460 -10.40274 -9.60207 -9.42195 -9.28760 -8.22017 -6.18239 0.69155 0.74104 1.31163 1.35402 1.42000 1.93187 2.23091 2.41514 3.09430 3.23673 3.68651 3.80941 3.88536 4.01439 4.13877 4.15704 4.27157 4.30514 4.32222 4.44251 4.46188 4.49051 4.53909 4.61027 4.64832 4.73514 4.81625 4.84108 4.87024 4.88749 4.90010 4.97375 5.04328 5.06657 5.12532 5.16323 5.19815 5.24550 5.36586 5.39775 5.41979 5.45578 5.62582 5.68695 5.77902 5.80767 5.84903 6.03813 6.33517 6.37119 6.61970 6.80375 7.45589 7.53096 8.95214 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.004566 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.319716 B = 6130.571550 C = 7241.398679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.087 0.913 4 C -0.130 4.130 5 C 0.102 3.898 6 N -0.616 5.616 7 C 0.509 3.491 8 O -0.566 6.566 9 C -0.107 4.107 10 C 0.059 3.941 11 H 0.030 0.970 12 C -0.461 4.461 13 H 0.031 0.969 14 C 0.022 3.978 15 N -0.954 5.954 16 Si 0.917 3.083 17 H -0.293 1.293 18 H -0.296 1.296 19 H -0.219 1.219 20 C -0.063 4.063 21 C -0.151 4.151 22 C -0.124 4.124 23 C -0.139 4.139 24 C -0.125 4.125 25 C -0.118 4.118 26 C 0.113 3.887 27 C -0.093 4.093 28 H 0.092 0.908 29 C -0.142 4.142 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.257 0.743 40 H 0.109 0.891 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.139 0.861 44 H 0.107 0.893 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.024 0.976 48 H 0.071 0.929 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.462 16.839 -11.253 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.106 0.894 4 C -0.168 4.168 5 C -0.020 4.020 6 N -0.351 5.351 7 C 0.299 3.701 8 O -0.444 6.444 9 C -0.147 4.147 10 C 0.039 3.961 11 H 0.048 0.952 12 C -0.499 4.499 13 H 0.049 0.951 14 C -0.173 4.173 15 N -0.596 5.596 16 Si 0.744 3.256 17 H -0.220 1.220 18 H -0.223 1.223 19 H -0.142 1.142 20 C -0.063 4.063 21 C -0.169 4.169 22 C -0.142 4.142 23 C -0.157 4.157 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.010 4.010 27 C -0.112 4.112 28 H 0.110 0.890 29 C -0.199 4.199 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.128 0.872 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.156 0.844 44 H 0.125 0.875 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.043 0.957 48 H 0.090 0.910 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.222 16.468 -10.580 20.259 hybrid contribution 0.590 -0.812 1.291 1.636 sum -4.632 15.656 -9.289 18.785 Atomic orbital electron populations 1.21845 0.94145 1.01720 1.02465 1.21094 0.96360 0.99330 0.93008 0.89438 1.22115 0.94323 1.01176 0.99233 1.22068 0.94963 1.00001 0.84929 1.48203 1.43508 1.35277 1.08148 1.21076 0.78669 0.78522 0.91872 1.90708 1.58867 1.59440 1.35352 1.21567 1.00379 0.98530 0.94184 1.17996 0.94262 0.93109 0.90696 0.95187 1.20760 0.98482 1.11989 1.18650 0.95111 1.25615 1.01407 0.94812 0.95514 1.70044 1.38234 1.24395 1.26935 0.86205 0.82615 0.76813 0.79997 1.22031 1.22345 1.14171 1.20476 0.94113 0.96601 0.95149 1.21253 0.94796 1.02706 0.98140 1.21333 1.00581 0.98845 0.93463 1.21335 0.93787 1.00354 1.00228 1.21384 0.96101 0.99867 0.96941 1.20984 0.99920 0.98735 0.93975 1.21611 0.94488 0.98486 0.86427 1.21496 0.93654 0.95956 1.00120 0.88963 1.21813 1.01215 0.96629 1.00219 0.92102 0.91352 0.93376 0.92941 0.88266 0.89198 0.89255 0.88012 0.89172 0.93458 0.87249 0.84205 0.83560 0.84358 0.87536 0.92949 0.89911 0.95713 0.90974 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.87 71.98 0.64 -1.42 16 2 C -0.08 -1.33 2.45 -10.77 -0.03 -1.35 16 3 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.13 -2.34 5.03 30.82 0.16 -2.18 16 5 C 0.10 2.13 6.37 86.51 0.55 2.68 16 6 N -0.62 -18.96 2.40 -818.07 -1.97 -20.93 16 7 C 0.51 21.11 7.45 87.66 0.65 21.76 16 8 O -0.57 -30.22 14.43 -3.05 -0.04 -30.27 16 9 C -0.11 -4.06 3.31 29.85 0.10 -3.96 16 10 C 0.06 2.75 1.17 -12.28 -0.01 2.73 16 11 H 0.03 1.51 5.06 -2.39 -0.01 1.49 16 12 C -0.46 -26.75 6.87 25.60 0.18 -26.57 16 13 H 0.03 1.97 8.06 -2.91 -0.02 1.94 16 14 C 0.02 1.40 5.47 84.65 0.46 1.86 16 15 N -0.95 -63.98 13.96 21.45 0.30 -63.68 16 16 Si 0.92 48.85 26.95 68.60 1.85 50.70 16 17 H -0.29 -16.22 7.11 99.48 0.71 -15.51 16 18 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 19 H -0.22 -10.32 4.53 99.48 0.45 -9.86 16 20 C -0.06 -2.58 4.57 -19.86 -0.09 -2.68 16 21 C -0.15 -5.57 8.55 22.27 0.19 -5.38 16 22 C -0.12 -3.74 10.05 22.27 0.22 -3.51 16 23 C -0.14 -3.85 10.05 22.27 0.22 -3.63 16 24 C -0.13 -3.84 10.05 22.27 0.22 -3.61 16 25 C -0.12 -4.47 8.92 22.27 0.20 -4.27 16 26 C 0.11 3.21 5.82 86.36 0.50 3.71 16 27 C -0.09 -2.13 2.72 -10.72 -0.03 -2.16 16 28 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 29 C -0.14 -4.10 8.38 71.98 0.60 -3.50 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.05 0.79 6.47 -2.38 -0.02 0.78 16 33 H 0.05 1.19 6.33 -2.39 -0.02 1.17 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.81 5.93 -2.39 -0.01 1.80 16 37 H 0.10 3.12 7.93 -2.39 -0.02 3.10 16 38 H 0.09 3.26 7.60 -2.39 -0.02 3.24 16 39 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 40 H 0.11 4.00 7.09 -2.91 -0.02 3.98 16 41 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 42 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 43 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 44 H 0.11 4.20 7.88 -2.91 -0.02 4.18 16 45 H 0.05 1.92 7.01 -2.38 -0.02 1.90 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.07 1.74 6.47 -2.39 -0.02 1.73 16 49 H 0.04 1.27 5.97 -2.39 -0.01 1.26 16 Total: -1.00 -79.88 372.01 5.54 -74.34 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.66 Total: 21.32 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 4.74 Total: -31.48 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -1.67 Total: -84.61 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.04 Total: -30.27 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 1.85 Total: 50.70 kcal Total: -79.88 5.54 -74.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356635427.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.737 kcal (2) G-P(sol) polarization free energy of solvation -79.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds