Wall clock time and date at job start Tue Mar 31 2020 10:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45626 * 2 1 4 4 C 1.53045 * 109.45832 * 240.02963 * 2 1 3 5 5 C 1.53189 * 109.31160 * 178.60947 * 4 2 1 6 6 N 1.46930 * 108.77397 * 54.63963 * 5 4 2 7 7 C 1.34775 * 120.63318 * 126.36386 * 6 5 4 8 8 O 1.21274 * 120.00321 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99781 * 0.02562 * 7 6 5 10 10 C 1.53005 * 109.47144 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46705 * 54.99689 * 10 9 7 12 12 C 1.50698 * 109.47006 * 294.99839 * 10 9 7 13 13 H 1.08004 * 119.99806 * 119.59765 * 12 10 9 14 14 C 1.37873 * 120.00073 * 299.87442 * 12 10 9 15 15 N 1.31511 * 120.00155 * 7.78513 * 14 12 10 16 16 Si 1.86808 * 119.99885 * 187.77897 * 14 12 10 17 17 H 1.48500 * 109.47098 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46827 * 120.00023 * 16 14 12 19 19 H 1.48501 * 109.47278 * 240.00068 * 16 14 12 20 20 C 1.50700 * 109.47130 * 175.00049 * 10 9 7 21 21 C 1.38237 * 119.99828 * 209.59799 * 20 10 9 22 22 C 1.38229 * 119.99881 * 179.76596 * 21 20 10 23 23 C 1.38235 * 120.00247 * 0.48376 * 22 21 20 24 24 C 1.38239 * 119.99850 * 359.78945 * 23 22 21 25 25 C 1.38234 * 119.99987 * 29.86615 * 20 10 9 26 26 C 1.46931 * 118.73572 * 306.64262 * 6 5 4 27 27 C 1.52760 * 109.00912 * 53.30898 * 26 6 5 28 28 H 1.09004 * 109.38663 * 65.51671 * 27 26 6 29 29 C 1.53000 * 109.56041 * 185.55449 * 27 26 6 30 30 H 1.09003 * 109.47186 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46939 * 299.96858 * 1 2 3 32 32 H 1.08994 * 109.47409 * 59.97183 * 1 2 3 33 33 H 1.09006 * 109.49348 * 58.65813 * 4 2 1 34 34 H 1.08999 * 109.50012 * 298.56692 * 4 2 1 35 35 H 1.08991 * 109.58916 * 294.84940 * 5 4 2 36 36 H 1.09003 * 109.70353 * 174.49233 * 5 4 2 37 37 H 1.09003 * 109.47194 * 59.99852 * 9 7 6 38 38 H 1.09004 * 109.46927 * 299.99676 * 9 7 6 39 39 H 0.97002 * 120.00352 * 180.02562 * 15 14 12 40 40 H 1.08001 * 119.99831 * 359.97438 * 21 20 10 41 41 H 1.07999 * 120.00399 * 180.24832 * 22 21 20 42 42 H 1.07999 * 120.00271 * 179.76891 * 23 22 21 43 43 H 1.08001 * 120.00331 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.00334 * 0.02562 * 25 20 10 45 45 H 1.09000 * 109.58233 * 173.14380 * 26 6 5 46 46 H 1.09003 * 109.58471 * 293.56506 * 26 6 5 47 47 H 1.09004 * 109.46666 * 179.97438 * 29 27 26 48 48 H 1.09002 * 109.47158 * 299.96011 * 29 27 26 49 49 H 1.08996 * 109.47607 * 59.96717 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9614 -2.2578 0.0000 8 8 5.3640 -2.7113 1.0503 9 6 5.4611 -2.8218 -1.3051 10 6 6.4589 -3.9476 -1.0255 11 1 5.9943 -4.6925 -0.3795 12 6 7.6774 -3.3809 -0.3435 13 1 7.9549 -3.7270 0.6413 14 6 8.4346 -2.4167 -0.9742 15 7 8.0130 -1.8809 -2.0987 16 14 10.0594 -1.8712 -0.2312 17 1 10.3054 -2.6216 1.0264 18 1 11.1588 -2.1422 -1.1920 19 1 10.0059 -0.4164 0.0623 20 6 6.8652 -4.5929 -2.3253 21 6 7.2253 -5.9273 -2.3515 22 6 7.5934 -6.5205 -3.5445 23 6 7.6111 -5.7769 -4.7097 24 6 7.2565 -4.4410 -4.6825 25 6 6.8833 -3.8491 -3.4903 26 6 3.5671 -0.6922 1.2642 27 6 2.0399 -0.7207 1.2501 28 1 1.6974 -1.7555 1.2387 29 6 1.5029 -0.0187 2.4989 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5142 -0.8897 33 1 1.6571 -0.2209 -2.1399 34 1 1.6978 -1.7557 -1.2383 35 1 3.9142 0.3408 -1.3675 36 1 3.9437 -1.2831 -2.0986 37 1 5.9529 -2.0345 -1.8765 38 1 4.6203 -3.2147 -1.8768 39 1 8.5459 -1.2028 -2.5427 40 1 7.2157 -6.5072 -1.4404 41 1 7.8708 -7.5640 -3.5658 42 1 7.9023 -6.2394 -5.6412 43 1 7.2708 -3.8598 -5.5927 44 1 6.6066 -2.8054 -3.4690 45 1 3.9347 -1.2906 2.0978 46 1 3.9097 0.3370 1.3715 47 1 0.4131 -0.0395 2.4871 48 1 1.8662 -0.5323 3.3891 49 1 1.8465 1.0156 2.5105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356635428.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:26 Heat of formation + Delta-G solvation = -25.457923 kcal Electronic energy + Delta-G solvation = -27400.697747 eV Core-core repulsion = 23905.818662 eV Total energy + Delta-G solvation = -3494.879085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.76943 -38.35004 -37.36021 -34.24253 -33.89005 -32.15466 -31.03888 -29.83199 -28.72941 -28.18666 -26.83599 -25.35708 -23.22313 -22.34744 -22.04857 -21.37104 -20.08607 -19.53848 -18.18173 -16.58513 -16.10147 -15.47989 -15.37951 -14.92152 -14.73715 -14.63553 -14.24187 -13.89190 -13.72093 -13.47451 -13.22004 -13.05462 -12.68096 -12.45968 -12.21971 -12.06484 -11.95364 -11.90229 -11.66361 -11.60425 -11.40923 -11.20975 -10.95561 -10.91127 -10.75805 -10.66372 -10.36893 -10.30217 -10.19510 -10.13201 -9.91580 -9.30040 -9.17355 -8.60374 -8.39456 -7.99799 -7.79827 -7.43629 -5.98190 -4.04295 2.48907 2.57499 3.31434 3.39305 3.45975 3.66831 3.73770 4.45745 4.67134 4.77147 4.83372 4.97040 5.08060 5.26617 5.39854 5.40866 5.49446 5.51169 5.55714 5.66101 5.72406 5.80992 5.82809 5.88911 5.90421 5.95266 6.00158 6.01920 6.04852 6.09124 6.20649 6.25279 6.34753 6.41103 6.47225 6.50878 6.63651 6.72638 6.78139 7.08923 7.14742 7.24302 7.28986 7.49781 7.55371 7.69854 7.97871 8.08251 8.18617 8.23092 8.38637 8.93336 9.24958 9.58851 10.97653 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.004309 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.289277 B = 6496.332827 C = 7554.071585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.130 4.130 5 C 0.112 3.888 6 N -0.627 5.627 7 C 0.529 3.471 8 O -0.530 6.530 9 C -0.137 4.137 10 C 0.087 3.913 11 H 0.036 0.964 12 C -0.470 4.470 13 H 0.061 0.939 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.890 3.110 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.287 1.287 20 C -0.029 4.029 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.154 4.154 24 C -0.144 4.144 25 C -0.074 4.074 26 C 0.118 3.882 27 C -0.101 4.101 28 H 0.071 0.929 29 C -0.146 4.146 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.049 0.951 39 H 0.260 0.740 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.144 0.856 45 H 0.088 0.912 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.010 3.856 -1.081 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.168 4.168 5 C -0.011 4.011 6 N -0.364 5.364 7 C 0.320 3.680 8 O -0.405 6.405 9 C -0.177 4.177 10 C 0.068 3.932 11 H 0.054 0.946 12 C -0.507 4.507 13 H 0.079 0.921 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.213 1.213 20 C -0.029 4.029 21 C -0.149 4.149 22 C -0.160 4.160 23 C -0.172 4.172 24 C -0.162 4.162 25 C -0.092 4.092 26 C -0.005 4.005 27 C -0.120 4.120 28 H 0.090 0.910 29 C -0.203 4.203 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.153 0.847 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.161 0.839 45 H 0.106 0.894 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.674 3.724 -0.613 13.224 hybrid contribution 1.131 0.486 0.193 1.246 sum -11.543 4.210 -0.420 12.294 Atomic orbital electron populations 1.21885 0.95461 1.01688 1.01408 1.21139 0.95276 0.99429 0.94643 0.91269 1.22004 0.96028 1.01170 0.97638 1.21594 0.93045 0.99236 0.87253 1.48220 1.45095 1.37290 1.05756 1.21165 0.76288 0.77755 0.92841 1.90587 1.55925 1.59746 1.34227 1.22019 0.98021 1.03844 0.93782 1.17654 0.93917 0.91943 0.89717 0.94588 1.21035 1.08530 1.19510 1.01644 0.92108 1.24858 0.97967 0.96055 0.94960 1.69583 1.37638 1.27907 1.17824 0.86548 0.84158 0.78157 0.79317 1.19821 1.21109 1.21312 1.20346 0.94768 0.91907 0.95916 1.20923 1.01634 0.95592 0.96758 1.20803 1.03137 0.98693 0.93414 1.20777 1.04195 0.95037 0.97177 1.21071 1.02401 0.94662 0.98072 1.21496 0.96903 1.00189 0.90647 1.21355 0.92218 0.98579 0.88360 1.21455 0.95867 1.00058 0.94640 0.91030 1.21822 1.00822 1.00436 0.97266 0.92839 0.92527 0.92930 0.91125 0.91597 0.92230 0.89142 0.84679 0.93293 0.92977 0.87603 0.88065 0.88284 0.88059 0.83880 0.89396 0.92724 0.92342 0.92588 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.81 37.16 0.33 -0.96 16 2 C -0.09 -0.91 2.23 -90.58 -0.20 -1.11 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.13 -1.46 5.36 -26.61 -0.14 -1.60 16 5 C 0.11 1.58 6.35 -3.71 -0.02 1.55 16 6 N -0.63 -10.93 2.98 -173.03 -0.52 -11.44 16 7 C 0.53 11.53 7.45 -10.99 -0.08 11.45 16 8 O -0.53 -13.44 14.40 5.56 0.08 -13.36 16 9 C -0.14 -2.97 2.52 -27.88 -0.07 -3.04 16 10 C 0.09 2.11 1.97 -92.92 -0.18 1.93 16 11 H 0.04 0.90 7.90 -51.93 -0.41 0.49 16 12 C -0.47 -12.73 7.26 -34.44 -0.25 -12.98 16 13 H 0.06 1.75 7.83 -52.48 -0.41 1.34 16 14 C 0.06 1.62 5.13 -17.82 -0.09 1.53 16 15 N -0.89 -22.70 7.89 55.43 0.44 -22.26 16 16 Si 0.89 21.65 29.55 -169.99 -5.02 16.62 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 C -0.03 -0.66 4.65 -104.62 -0.49 -1.15 16 21 C -0.13 -2.81 9.70 -39.59 -0.38 -3.19 16 22 C -0.14 -2.74 10.05 -39.59 -0.40 -3.14 16 23 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 24 C -0.14 -2.85 10.05 -39.58 -0.40 -3.25 16 25 C -0.07 -1.62 7.51 -39.58 -0.30 -1.92 16 26 C 0.12 1.81 5.69 -3.93 -0.02 1.79 16 27 C -0.10 -1.21 2.40 -90.72 -0.22 -1.42 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 C -0.15 -1.44 8.81 37.16 0.33 -1.11 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 6.40 -51.93 -0.33 0.12 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.30 5.93 -51.93 -0.31 1.00 16 37 H 0.14 3.10 4.48 -51.93 -0.23 2.86 16 38 H 0.05 0.95 7.69 -51.93 -0.40 0.55 16 39 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 40 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.14 3.21 5.08 -52.49 -0.27 2.94 16 45 H 0.09 1.53 7.01 -51.93 -0.36 1.17 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.06 0.50 6.40 -51.93 -0.33 0.17 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -28.98 372.79 -10.50 -39.48 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.11 Total: 5.26 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.99 Total: -19.92 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: -0.08 Total: -33.71 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.98 -10.50 -39.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356635428.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.026 kcal (2) G-P(sol) polarization free energy of solvation -28.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds