Wall clock time and date at job start Tue Mar 31 2020 10:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45626 * 2 1 4 4 C 1.53045 * 109.45832 * 240.02963 * 2 1 3 5 5 C 1.53189 * 109.31160 * 178.60947 * 4 2 1 6 6 N 1.46930 * 108.77397 * 54.63963 * 5 4 2 7 7 C 1.34775 * 120.63318 * 126.36386 * 6 5 4 8 8 O 1.21274 * 120.00321 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99781 * 0.02562 * 7 6 5 10 10 C 1.53005 * 109.47144 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.46705 * 54.99689 * 10 9 7 12 12 C 1.50698 * 109.47006 * 294.99839 * 10 9 7 13 13 H 1.08004 * 119.99806 * 119.59765 * 12 10 9 14 14 C 1.37873 * 120.00073 * 299.87442 * 12 10 9 15 15 N 1.31511 * 120.00155 * 7.78513 * 14 12 10 16 16 Si 1.86808 * 119.99885 * 187.77897 * 14 12 10 17 17 H 1.48500 * 109.47098 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46827 * 120.00023 * 16 14 12 19 19 H 1.48501 * 109.47278 * 240.00068 * 16 14 12 20 20 C 1.50700 * 109.47130 * 175.00049 * 10 9 7 21 21 C 1.38237 * 119.99828 * 209.59799 * 20 10 9 22 22 C 1.38229 * 119.99881 * 179.76596 * 21 20 10 23 23 C 1.38235 * 120.00247 * 0.48376 * 22 21 20 24 24 C 1.38239 * 119.99850 * 359.78945 * 23 22 21 25 25 C 1.38234 * 119.99987 * 29.86615 * 20 10 9 26 26 C 1.46931 * 118.73572 * 306.64262 * 6 5 4 27 27 C 1.52760 * 109.00912 * 53.30898 * 26 6 5 28 28 H 1.09004 * 109.38663 * 65.51671 * 27 26 6 29 29 C 1.53000 * 109.56041 * 185.55449 * 27 26 6 30 30 H 1.09003 * 109.47186 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46939 * 299.96858 * 1 2 3 32 32 H 1.08994 * 109.47409 * 59.97183 * 1 2 3 33 33 H 1.09006 * 109.49348 * 58.65813 * 4 2 1 34 34 H 1.08999 * 109.50012 * 298.56692 * 4 2 1 35 35 H 1.08991 * 109.58916 * 294.84940 * 5 4 2 36 36 H 1.09003 * 109.70353 * 174.49233 * 5 4 2 37 37 H 1.09003 * 109.47194 * 59.99852 * 9 7 6 38 38 H 1.09004 * 109.46927 * 299.99676 * 9 7 6 39 39 H 0.97002 * 120.00352 * 180.02562 * 15 14 12 40 40 H 1.08001 * 119.99831 * 359.97438 * 21 20 10 41 41 H 1.07999 * 120.00399 * 180.24832 * 22 21 20 42 42 H 1.07999 * 120.00271 * 179.76891 * 23 22 21 43 43 H 1.08001 * 120.00331 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.00334 * 0.02562 * 25 20 10 45 45 H 1.09000 * 109.58233 * 173.14380 * 26 6 5 46 46 H 1.09003 * 109.58471 * 293.56506 * 26 6 5 47 47 H 1.09004 * 109.46666 * 179.97438 * 29 27 26 48 48 H 1.09002 * 109.47158 * 299.96011 * 29 27 26 49 49 H 1.08996 * 109.47607 * 59.96717 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9614 -2.2578 0.0000 8 8 5.3640 -2.7113 1.0503 9 6 5.4611 -2.8218 -1.3051 10 6 6.4589 -3.9476 -1.0255 11 1 5.9943 -4.6925 -0.3795 12 6 7.6774 -3.3809 -0.3435 13 1 7.9549 -3.7270 0.6413 14 6 8.4346 -2.4167 -0.9742 15 7 8.0130 -1.8809 -2.0987 16 14 10.0594 -1.8712 -0.2312 17 1 10.3054 -2.6216 1.0264 18 1 11.1588 -2.1422 -1.1920 19 1 10.0059 -0.4164 0.0623 20 6 6.8652 -4.5929 -2.3253 21 6 7.2253 -5.9273 -2.3515 22 6 7.5934 -6.5205 -3.5445 23 6 7.6111 -5.7769 -4.7097 24 6 7.2565 -4.4410 -4.6825 25 6 6.8833 -3.8491 -3.4903 26 6 3.5671 -0.6922 1.2642 27 6 2.0399 -0.7207 1.2501 28 1 1.6974 -1.7555 1.2387 29 6 1.5029 -0.0187 2.4989 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3634 0.5142 -0.8897 33 1 1.6571 -0.2209 -2.1399 34 1 1.6978 -1.7557 -1.2383 35 1 3.9142 0.3408 -1.3675 36 1 3.9437 -1.2831 -2.0986 37 1 5.9529 -2.0345 -1.8765 38 1 4.6203 -3.2147 -1.8768 39 1 8.5459 -1.2028 -2.5427 40 1 7.2157 -6.5072 -1.4404 41 1 7.8708 -7.5640 -3.5658 42 1 7.9023 -6.2394 -5.6412 43 1 7.2708 -3.8598 -5.5927 44 1 6.6066 -2.8054 -3.4690 45 1 3.9347 -1.2906 2.0978 46 1 3.9097 0.3370 1.3715 47 1 0.4131 -0.0395 2.4871 48 1 1.8662 -0.5323 3.3891 49 1 1.8465 1.0156 2.5105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356635428.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:25 Heat of formation + Delta-G solvation = -38.331384 kcal Electronic energy + Delta-G solvation = -27401.255983 eV Core-core repulsion = 23905.818662 eV Total energy + Delta-G solvation = -3495.437321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.18564 -39.90208 -38.79306 -36.05866 -35.20661 -33.24691 -32.88905 -31.43087 -30.28586 -29.23368 -28.31323 -26.90508 -24.62339 -23.84202 -23.10221 -22.93741 -21.56706 -20.75482 -19.70715 -18.29096 -17.92690 -17.09128 -16.91524 -16.59804 -16.09997 -15.66785 -15.52689 -15.39967 -15.17142 -14.84499 -14.66119 -14.26238 -14.09178 -13.86426 -13.78228 -13.45036 -13.29258 -13.17466 -12.89714 -12.84578 -12.76593 -12.68385 -12.63324 -12.48307 -12.21260 -11.93910 -11.90835 -11.72481 -11.66460 -11.28719 -11.12263 -11.08832 -11.04675 -10.48140 -10.26436 -9.43408 -9.40359 -9.12306 -7.98140 -6.10437 0.86934 0.98171 1.33975 1.37637 1.47567 2.02530 2.27369 2.44410 3.18470 3.35168 3.70869 3.85221 3.86346 4.08924 4.14565 4.33039 4.35226 4.40457 4.48244 4.51471 4.57625 4.64998 4.68771 4.70155 4.78574 4.81225 4.86931 4.87412 4.93535 5.00453 5.06948 5.09357 5.10541 5.13276 5.19336 5.26027 5.28639 5.39603 5.51433 5.52160 5.58886 5.62879 5.67301 5.83651 5.90674 5.94120 6.08958 6.37009 6.41167 6.56625 6.66436 6.83856 7.51064 7.58233 8.93201 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.004309 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.289277 B = 6496.332827 C = 7554.071585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 H 0.077 0.923 4 C -0.123 4.123 5 C 0.104 3.896 6 N -0.622 5.622 7 C 0.519 3.481 8 O -0.580 6.580 9 C -0.122 4.122 10 C 0.088 3.912 11 H 0.009 0.991 12 C -0.493 4.493 13 H 0.025 0.975 14 C 0.036 3.964 15 N -0.883 5.883 16 Si 0.929 3.071 17 H -0.287 1.287 18 H -0.277 1.277 19 H -0.281 1.281 20 C -0.053 4.053 21 C -0.152 4.152 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.086 4.086 26 C 0.114 3.886 27 C -0.093 4.093 28 H 0.056 0.944 29 C -0.141 4.141 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.067 0.933 39 H 0.263 0.737 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.048 0.952 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.212 4.887 -3.501 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.018 4.018 6 N -0.357 5.357 7 C 0.310 3.690 8 O -0.459 6.459 9 C -0.162 4.162 10 C 0.068 3.932 11 H 0.028 0.972 12 C -0.531 4.531 13 H 0.044 0.956 14 C -0.163 4.163 15 N -0.522 5.522 16 Si 0.757 3.243 17 H -0.213 1.213 18 H -0.203 1.203 19 H -0.208 1.208 20 C -0.053 4.053 21 C -0.170 4.170 22 C -0.157 4.157 23 C -0.165 4.165 24 C -0.164 4.164 25 C -0.104 4.104 26 C -0.009 4.009 27 C -0.113 4.113 28 H 0.074 0.926 29 C -0.199 4.199 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.145 0.855 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.918 4.792 -3.070 15.037 hybrid contribution 1.493 0.139 0.914 1.756 sum -12.425 4.931 -2.156 13.540 Atomic orbital electron populations 1.21837 0.93532 1.01871 1.02662 1.21139 0.96780 0.99256 0.93006 0.90459 1.21976 0.93423 1.01299 0.99393 1.21872 0.95313 0.99344 0.85264 1.48255 1.43629 1.35812 1.07964 1.21262 0.76890 0.78684 0.92165 1.90557 1.58082 1.61719 1.35506 1.21796 0.97908 1.02646 0.93842 1.17541 0.93355 0.92066 0.90189 0.97243 1.20947 1.10376 1.20950 1.00791 0.95611 1.25208 0.99510 0.96027 0.95591 1.69661 1.37658 1.27472 1.17454 0.85956 0.82228 0.77775 0.78359 1.21251 1.20294 1.20752 1.20281 0.96544 0.92911 0.95583 1.21096 1.02556 0.95363 0.97995 1.21162 1.01718 1.00292 0.92569 1.21221 1.02321 0.94543 0.98429 1.21393 1.01351 0.95573 0.98105 1.21433 0.97928 0.99822 0.91261 1.21518 0.94826 0.98101 0.86433 1.21387 0.92954 0.99946 0.96979 0.92556 1.21798 1.01912 1.00484 0.95674 0.93198 0.91471 0.91539 0.88323 0.92418 0.91061 0.89730 0.85473 0.91478 0.92734 0.87974 0.84927 0.84472 0.85399 0.84853 0.92377 0.91698 0.90416 0.93288 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.81 71.98 0.63 -1.39 16 2 C -0.08 -1.55 2.23 -10.77 -0.02 -1.57 16 3 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.12 -2.51 5.36 30.67 0.16 -2.34 16 5 C 0.10 2.85 6.35 86.36 0.55 3.40 16 6 N -0.62 -22.25 2.98 -819.74 -2.44 -24.69 16 7 C 0.52 23.88 7.45 87.66 0.65 24.53 16 8 O -0.58 -31.64 14.40 -3.01 -0.04 -31.68 16 9 C -0.12 -5.52 2.52 29.85 0.08 -5.44 16 10 C 0.09 4.50 1.97 -12.29 -0.02 4.48 16 11 H 0.01 0.50 7.90 -2.39 -0.02 0.48 16 12 C -0.49 -28.24 7.26 25.60 0.19 -28.06 16 13 H 0.03 1.60 7.83 -2.91 -0.02 1.58 16 14 C 0.04 1.97 5.13 84.65 0.43 2.40 16 15 N -0.88 -45.41 7.89 21.45 0.17 -45.24 16 16 Si 0.93 45.16 29.55 68.60 2.03 47.18 16 17 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 20 C -0.05 -2.47 4.65 -19.87 -0.09 -2.56 16 21 C -0.15 -6.58 9.70 22.27 0.22 -6.36 16 22 C -0.14 -5.07 10.05 22.27 0.22 -4.84 16 23 C -0.15 -5.03 10.05 22.27 0.22 -4.80 16 24 C -0.15 -5.43 10.05 22.27 0.22 -5.20 16 25 C -0.09 -3.73 7.51 22.27 0.17 -3.57 16 26 C 0.11 3.58 5.69 86.22 0.49 4.07 16 27 C -0.09 -2.17 2.40 -10.86 -0.03 -2.19 16 28 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 29 C -0.14 -2.57 8.81 71.98 0.63 -1.93 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.84 6.40 -2.38 -0.02 0.82 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 2.41 5.93 -2.39 -0.01 2.39 16 37 H 0.13 5.99 4.48 -2.39 -0.01 5.98 16 38 H 0.07 2.70 7.69 -2.38 -0.02 2.68 16 39 H 0.26 12.97 8.31 -92.71 -0.77 12.20 16 40 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 41 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 42 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 44 H 0.13 5.98 5.08 -2.91 -0.01 5.97 16 45 H 0.06 2.17 7.01 -2.39 -0.02 2.15 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.08 1.14 6.40 -2.38 -0.02 1.12 16 48 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -66.00 372.79 5.33 -60.67 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.92 Total: 25.17 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 4.71 Total: -31.40 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -2.27 Total: -69.93 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.04 Total: -31.68 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -66.00 5.33 -60.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356635428.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.336 kcal (2) G-P(sol) polarization free energy of solvation -66.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds