Wall clock time and date at job start Tue Mar 31 2020 10:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46283 * 2 1 4 4 C 1.53038 * 109.45075 * 240.03463 * 2 1 3 5 5 C 1.53194 * 109.31750 * 178.62337 * 4 2 1 6 6 N 1.46928 * 108.77647 * 54.62792 * 5 4 2 7 7 C 1.34780 * 120.62814 * 126.41560 * 6 5 4 8 8 O 1.21282 * 119.99578 * 179.97438 * 7 6 5 9 9 C 1.50694 * 120.00140 * 359.97438 * 7 6 5 10 10 C 1.52995 * 109.47368 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47008 * 54.99958 * 10 9 7 12 12 C 1.50704 * 109.47093 * 295.00109 * 10 9 7 13 13 H 1.08004 * 119.99927 * 121.36563 * 12 10 9 14 14 C 1.37876 * 120.00159 * 301.36493 * 12 10 9 15 15 N 1.31513 * 119.99834 * 6.17998 * 14 12 10 16 16 Si 1.86798 * 120.00088 * 186.17981 * 14 12 10 17 17 H 1.48500 * 109.46963 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46948 * 120.00213 * 16 14 12 19 19 H 1.48499 * 109.47108 * 240.00119 * 16 14 12 20 20 C 1.50697 * 109.47443 * 175.00134 * 10 9 7 21 21 C 1.38234 * 120.00237 * 211.37097 * 20 10 9 22 22 C 1.38239 * 120.00307 * 179.78716 * 21 20 10 23 23 C 1.38237 * 119.99368 * 0.44333 * 22 21 20 24 24 C 1.38236 * 120.00613 * 359.81178 * 23 22 21 25 25 C 1.38235 * 119.99626 * 359.97438 * 24 23 22 26 26 C 1.46925 * 118.74105 * 306.39899 * 6 5 4 27 27 C 1.53047 * 109.46154 * 119.96833 * 2 1 3 28 28 H 1.08997 * 109.49666 * 301.32517 * 27 2 1 29 29 C 1.53001 * 109.49368 * 61.42520 * 27 2 1 30 30 H 1.08998 * 109.46667 * 300.00210 * 1 2 3 31 31 H 1.08992 * 109.46867 * 60.00160 * 1 2 3 32 32 H 1.09001 * 109.46756 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.49387 * 298.57049 * 4 2 1 34 34 H 1.08992 * 109.50269 * 58.66676 * 4 2 1 35 35 H 1.08997 * 109.58601 * 294.84957 * 5 4 2 36 36 H 1.08994 * 109.70696 * 174.48959 * 5 4 2 37 37 H 1.09002 * 109.47344 * 300.00357 * 9 7 6 38 38 H 1.09001 * 109.47141 * 59.99841 * 9 7 6 39 39 H 0.97000 * 120.00453 * 179.97438 * 15 14 12 40 40 H 1.07999 * 119.99862 * 0.02562 * 21 20 10 41 41 H 1.07991 * 120.00348 * 180.27848 * 22 21 20 42 42 H 1.08007 * 119.99740 * 179.83543 * 23 22 21 43 43 H 1.08003 * 120.00299 * 180.02562 * 24 23 22 44 44 H 1.08005 * 120.00030 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.58644 * 293.81927 * 26 6 5 46 46 H 1.09002 * 109.70649 * 173.46132 * 26 6 5 47 47 H 1.09000 * 109.47522 * 59.99423 * 29 27 2 48 48 H 1.09000 * 109.47041 * 180.02562 * 29 27 2 49 49 H 1.09006 * 109.47092 * 299.99780 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2501 5 6 3.5711 -0.6890 -1.2645 6 7 4.0677 -1.2493 -0.0003 7 6 4.9617 -2.2579 -0.0004 8 8 5.3643 -2.7114 1.0499 9 6 5.4611 -2.8220 -1.3055 10 6 6.4594 -3.9471 -1.0261 11 1 5.9956 -4.6922 -0.3797 12 6 7.6780 -3.3797 -0.3448 13 1 7.9726 -3.7458 0.6277 14 6 8.4169 -2.3933 -0.9629 15 7 7.9927 -1.8618 -2.0885 16 14 10.0205 -1.8119 -0.2014 17 1 10.2732 -2.5632 1.0543 18 1 11.1353 -2.0499 -1.1531 19 1 9.9280 -0.3607 0.0996 20 6 6.8655 -4.5927 -2.3259 21 6 7.1909 -5.9358 -2.3585 22 6 7.5592 -6.5290 -3.5516 23 6 7.6109 -5.7768 -4.7103 24 6 7.2907 -4.4325 -4.6767 25 6 6.9182 -3.8404 -3.4845 26 6 3.5714 -0.6890 1.2640 27 6 2.0399 -0.7208 1.2501 28 1 1.6574 -0.2207 2.1398 29 6 1.5595 -2.1734 1.2335 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6973 -1.7556 -1.2383 34 1 1.6570 -0.2208 -2.1398 35 1 3.9143 0.3404 -1.3676 36 1 3.9433 -1.2834 -2.0988 37 1 4.6202 -3.2154 -1.8768 38 1 5.9522 -2.0347 -1.8774 39 1 8.5123 -1.1676 -2.5232 40 1 7.1536 -6.5226 -1.4527 41 1 7.8090 -7.5793 -3.5780 42 1 7.9012 -6.2397 -5.6420 43 1 7.3308 -3.8450 -5.5821 44 1 6.6683 -2.7900 -3.4581 45 1 3.9145 0.3405 1.3671 46 1 3.9416 -1.2829 2.0997 47 1 1.9436 -2.6730 0.3442 48 1 1.9225 -2.6863 2.1242 49 1 0.4698 -2.1956 1.2207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356635429.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:28 Heat of formation + Delta-G solvation = -33.676302 kcal Electronic energy + Delta-G solvation = -27677.473800 eV Core-core repulsion = 24182.238338 eV Total energy + Delta-G solvation = -3495.235461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26604 -39.92572 -38.80812 -36.05905 -35.01671 -33.08909 -32.70610 -31.41199 -30.21554 -29.33630 -28.35882 -27.03364 -24.56220 -24.07782 -23.45595 -22.92808 -21.59175 -20.41445 -19.12463 -18.30654 -17.93950 -17.08419 -16.92355 -16.40428 -16.28059 -15.94659 -15.50644 -15.33066 -15.16664 -14.85375 -14.45374 -14.34101 -14.29362 -13.80740 -13.77482 -13.46306 -13.23556 -13.14176 -13.10407 -12.82703 -12.79655 -12.66630 -12.56186 -12.31532 -12.18158 -11.94146 -11.86698 -11.72821 -11.57304 -11.18150 -11.14361 -11.07737 -11.03551 -10.48620 -10.22753 -9.41427 -9.37100 -9.11757 -7.97117 -6.10487 0.87011 0.98500 1.34040 1.37655 1.47586 2.06789 2.31514 2.44354 3.18707 3.35637 3.73610 3.82772 3.90675 4.14548 4.20069 4.29093 4.33699 4.40832 4.49607 4.51092 4.55753 4.66571 4.69374 4.76143 4.82892 4.84088 4.87191 4.91898 4.95506 5.00009 5.06161 5.07749 5.11538 5.14323 5.17951 5.26359 5.33456 5.42863 5.47503 5.52592 5.63203 5.64049 5.68043 5.87845 5.91988 5.94789 6.10360 6.37780 6.41789 6.57180 6.70070 6.84189 7.51397 7.62404 8.93256 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.004561 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.566481 B = 6137.130207 C = 7140.802551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 H 0.076 0.924 4 C -0.125 4.125 5 C 0.105 3.895 6 N -0.617 5.617 7 C 0.521 3.479 8 O -0.579 6.579 9 C -0.123 4.123 10 C 0.088 3.912 11 H 0.008 0.992 12 C -0.491 4.491 13 H 0.025 0.975 14 C 0.035 3.965 15 N -0.884 5.884 16 Si 0.930 3.070 17 H -0.287 1.287 18 H -0.278 1.278 19 H -0.281 1.281 20 C -0.054 4.054 21 C -0.153 4.153 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.088 4.088 26 C 0.111 3.889 27 C -0.092 4.092 28 H 0.093 0.907 29 C -0.141 4.141 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.129 0.871 39 H 0.263 0.737 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.138 0.862 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.040 0.960 48 H 0.035 0.965 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.179 4.258 -3.835 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 H 0.095 0.905 4 C -0.163 4.163 5 C -0.017 4.017 6 N -0.352 5.352 7 C 0.312 3.688 8 O -0.458 6.458 9 C -0.163 4.163 10 C 0.069 3.931 11 H 0.027 0.973 12 C -0.528 4.528 13 H 0.044 0.956 14 C -0.164 4.164 15 N -0.524 5.524 16 Si 0.758 3.242 17 H -0.213 1.213 18 H -0.203 1.203 19 H -0.207 1.207 20 C -0.055 4.055 21 C -0.171 4.171 22 C -0.158 4.158 23 C -0.165 4.165 24 C -0.165 4.165 25 C -0.107 4.107 26 C -0.011 4.011 27 C -0.111 4.111 28 H 0.111 0.889 29 C -0.198 4.198 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.146 0.854 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.155 0.845 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.054 0.946 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.891 4.164 -3.398 14.895 hybrid contribution 1.506 0.188 0.939 1.785 sum -12.385 4.351 -2.458 13.355 Atomic orbital electron populations 1.21823 0.93583 1.02093 1.02378 1.21103 0.96704 0.99026 0.93283 0.90544 1.22011 0.93420 1.01624 0.99216 1.21849 0.95337 0.99248 0.85309 1.48164 1.43566 1.35651 1.07781 1.21187 0.76874 0.78725 0.92034 1.90560 1.58093 1.61713 1.35467 1.21788 0.97808 1.02663 0.94031 1.17536 0.93356 0.92106 0.90102 0.97312 1.20961 1.10600 1.19483 1.01788 0.95645 1.25203 0.99405 0.96215 0.95552 1.69621 1.38204 1.26998 1.17534 0.85937 0.82043 0.77854 0.78372 1.21301 1.20321 1.20732 1.20309 0.96632 0.92907 0.95606 1.21105 1.02726 0.95259 0.97988 1.21160 1.01733 1.00241 0.92618 1.21222 1.02403 0.94417 0.98483 1.21401 1.01456 0.95514 0.98114 1.21547 0.97654 1.00236 0.91228 1.21594 0.94930 0.98006 0.86616 1.21481 0.92950 0.96882 0.99776 0.88866 1.21818 1.01472 0.95886 1.00636 0.92041 0.91672 0.92601 0.91901 0.88658 0.91185 0.89899 0.91671 0.85388 0.92716 0.87981 0.84933 0.84500 0.85458 0.84476 0.91669 0.92273 0.94075 0.94623 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.87 71.98 0.64 -1.33 16 2 C -0.08 -1.49 2.46 -10.77 -0.03 -1.52 16 3 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.12 -2.50 5.02 30.67 0.15 -2.35 16 5 C 0.10 2.83 6.34 86.36 0.55 3.38 16 6 N -0.62 -21.58 2.41 -818.91 -1.97 -23.55 16 7 C 0.52 23.64 7.45 87.65 0.65 24.29 16 8 O -0.58 -31.28 14.40 -3.04 -0.04 -31.32 16 9 C -0.12 -5.54 2.57 29.84 0.08 -5.46 16 10 C 0.09 4.52 1.98 -12.29 -0.02 4.49 16 11 H 0.01 0.46 7.89 -2.39 -0.02 0.44 16 12 C -0.49 -28.03 7.27 25.60 0.19 -27.85 16 13 H 0.03 1.57 7.82 -2.91 -0.02 1.55 16 14 C 0.04 1.92 5.14 84.65 0.44 2.36 16 15 N -0.88 -45.26 7.74 21.45 0.17 -45.09 16 16 Si 0.93 45.12 29.54 68.60 2.03 47.14 16 17 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 20 C -0.05 -2.53 4.68 -19.87 -0.09 -2.63 16 21 C -0.15 -6.59 9.70 22.27 0.22 -6.38 16 22 C -0.14 -5.07 10.05 22.27 0.22 -4.84 16 23 C -0.15 -5.04 10.05 22.27 0.22 -4.81 16 24 C -0.15 -5.47 10.05 22.27 0.22 -5.25 16 25 C -0.09 -3.84 7.56 22.27 0.17 -3.67 16 26 C 0.11 3.42 5.82 86.36 0.50 3.92 16 27 C -0.09 -2.05 2.72 -10.71 -0.03 -2.08 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 C -0.14 -3.44 8.38 71.98 0.60 -2.84 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.81 6.46 -2.39 -0.02 0.79 16 33 H 0.06 1.38 6.34 -2.38 -0.02 1.37 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 2.35 5.93 -2.39 -0.01 2.34 16 37 H 0.07 2.62 7.70 -2.39 -0.02 2.61 16 38 H 0.13 6.01 4.44 -2.39 -0.01 6.00 16 39 H 0.26 12.92 8.31 -92.71 -0.77 12.15 16 40 H 0.10 4.33 8.06 -2.91 -0.02 4.30 16 41 H 0.13 3.92 8.06 -2.92 -0.02 3.90 16 42 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 44 H 0.14 6.19 4.97 -2.91 -0.01 6.18 16 45 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.06 2.17 7.01 -2.39 -0.02 2.15 16 47 H 0.04 1.16 5.97 -2.39 -0.01 1.15 16 48 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.08 1.47 6.47 -2.38 -0.02 1.45 16 Total: -1.00 -65.44 368.18 5.78 -59.65 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.92 Total: 25.74 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 4.68 Total: -32.57 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -1.81 Total: -68.64 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.04 Total: -31.32 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.44 5.78 -59.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356635429.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.979 kcal (2) G-P(sol) polarization free energy of solvation -65.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds