Wall clock time and date at job start Tue Mar 31 2020 10:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47009 * 2 1 4 4 C 1.53002 * 109.47243 * 120.00172 * 2 1 3 5 5 C 1.53779 * 113.61173 * 299.99956 * 4 2 1 6 6 C 1.53781 * 87.08085 * 220.01927 * 5 4 2 7 7 C 1.53781 * 87.17389 * 25.38927 * 6 5 4 8 8 N 1.46502 * 109.46754 * 240.00017 * 2 1 3 9 9 C 1.46505 * 119.99915 * 299.99877 * 8 2 1 10 10 C 1.34777 * 119.99906 * 120.00088 * 8 2 1 11 11 O 1.21278 * 119.99815 * 0.02562 * 10 8 2 12 12 C 1.50700 * 119.99831 * 179.97438 * 10 8 2 13 13 C 1.53001 * 109.46963 * 179.97438 * 12 10 8 14 14 H 1.08997 * 109.47209 * 305.00618 * 13 12 10 15 15 C 1.50705 * 109.47130 * 65.00196 * 13 12 10 16 16 H 1.08006 * 119.99582 * 29.58303 * 15 13 12 17 17 C 1.37873 * 120.00088 * 209.58291 * 15 13 12 18 18 N 1.31515 * 120.00031 * 4.94431 * 17 15 13 19 19 Si 1.86800 * 119.99833 * 184.93754 * 17 15 13 20 20 H 1.48500 * 109.47192 * 60.00333 * 19 17 15 21 21 H 1.48508 * 109.46873 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47623 * 299.99962 * 19 17 15 23 23 C 1.50703 * 109.47207 * 185.00041 * 13 12 10 24 24 C 1.38236 * 119.99722 * 296.77374 * 23 13 12 25 25 C 1.38235 * 119.99686 * 179.79201 * 24 23 13 26 26 C 1.38240 * 119.99763 * 0.43337 * 25 24 23 27 27 C 1.38233 * 120.00166 * 359.81706 * 26 25 24 28 28 C 1.38226 * 119.99712 * 117.04295 * 23 13 12 29 29 H 1.09003 * 109.47421 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46956 * 299.99962 * 1 2 3 31 31 H 1.09001 * 109.47367 * 59.99856 * 1 2 3 32 32 H 1.08998 * 112.84812 * 71.19248 * 4 2 1 33 33 H 1.09004 * 113.61926 * 105.47193 * 5 4 2 34 34 H 1.09000 * 113.61592 * 334.56905 * 5 4 2 35 35 H 1.08995 * 113.61810 * 139.98112 * 6 5 4 36 36 H 1.09001 * 113.61156 * 270.80026 * 6 5 4 37 37 H 1.08996 * 113.61158 * 89.15734 * 7 6 5 38 38 H 1.08995 * 113.61926 * 220.06461 * 7 6 5 39 39 H 1.08998 * 109.46731 * 90.00728 * 9 8 2 40 40 H 1.09002 * 109.46819 * 209.99922 * 9 8 2 41 41 H 1.09002 * 109.46886 * 330.00139 * 9 8 2 42 42 H 1.09000 * 109.47126 * 299.99906 * 12 10 8 43 43 H 1.08998 * 109.46910 * 60.00144 * 12 10 8 44 44 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 45 45 H 1.08000 * 120.00096 * 359.97438 * 24 23 13 46 46 H 1.07999 * 119.99934 * 180.27246 * 25 24 23 47 47 H 1.07998 * 119.99627 * 179.84145 * 26 25 24 48 48 H 1.07997 * 119.99914 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.00438 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5812 -0.0723 2.5657 6 6 2.9922 -0.3573 3.1065 7 6 3.4748 -0.3293 1.6467 8 7 2.0183 -0.6906 -1.1962 9 6 1.6643 -2.0933 -1.4280 10 6 2.7931 -0.0356 -2.0834 11 8 3.0865 1.1253 -1.8912 12 6 3.2958 -0.7462 -3.3136 13 6 4.1452 0.2156 -4.1468 14 1 3.5666 1.1123 -4.3687 15 6 5.3812 0.5944 -3.3722 16 1 5.8062 -0.0986 -2.6611 17 6 5.9693 1.8254 -3.5711 18 7 5.3985 2.7065 -4.3633 19 14 7.5767 2.2418 -2.7155 20 1 8.6233 1.2731 -3.1295 21 1 7.9970 3.6153 -3.0928 22 1 7.3881 2.1680 -1.2443 23 6 4.5460 -0.4554 -5.4354 24 6 5.3472 -1.5815 -5.4081 25 6 5.7112 -2.1995 -6.5898 26 6 5.2814 -1.6861 -7.7992 27 6 4.4845 -0.5569 -7.8267 28 6 4.1169 0.0586 -6.6447 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8758 -1.7982 1.2128 33 1 0.7966 -0.6300 3.0773 34 1 1.3552 0.9900 2.4733 35 1 3.3976 0.4503 3.7160 36 1 3.0893 -1.3344 3.5798 37 1 3.7676 0.6626 1.3026 38 1 4.2168 -1.0941 1.4173 39 1 0.7375 -2.1444 -1.9994 40 1 2.4627 -2.5819 -1.9864 41 1 1.5294 -2.5969 -0.4708 42 1 3.9016 -1.6024 -3.0166 43 1 2.4482 -1.0891 -3.9069 44 1 5.8125 3.5724 -4.5035 45 1 5.6863 -1.9802 -4.4634 46 1 6.3336 -3.0819 -6.5683 47 1 5.5680 -2.1674 -8.7225 48 1 4.1484 -0.1561 -8.7715 49 1 3.4942 0.9407 -6.6662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356692288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:34 Heat of formation + Delta-G solvation = 1.414398 kcal Electronic energy + Delta-G solvation = -27114.127266 eV Core-core repulsion = 23620.413452 eV Total energy + Delta-G solvation = -3493.713814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.85311 -38.56462 -37.93532 -35.11319 -33.91798 -31.64653 -30.95117 -29.98679 -28.58006 -26.58023 -25.97634 -25.29078 -25.19134 -22.91685 -21.67084 -21.24888 -19.67114 -19.24363 -18.29518 -16.61180 -16.39991 -15.92727 -15.68296 -15.21840 -14.96515 -14.43901 -14.19981 -14.06658 -13.83113 -13.12418 -13.00161 -12.76193 -12.67359 -12.47227 -12.39959 -12.33213 -12.15318 -12.00835 -11.75268 -11.65790 -11.57811 -11.51616 -10.92051 -10.83266 -10.66164 -10.56078 -10.40518 -10.28695 -10.23560 -10.10768 -9.98666 -9.38657 -9.04897 -8.71210 -8.29246 -8.05893 -8.02633 -7.59288 -5.88573 -3.87492 2.30708 2.36572 3.41013 3.44243 3.46980 3.51185 3.60655 4.54831 4.62939 4.73443 4.76710 4.77684 4.94751 5.23721 5.30165 5.38036 5.44016 5.49644 5.63070 5.67555 5.68445 5.69917 5.71146 5.75249 5.82202 5.86428 5.88590 5.89187 5.92838 6.12728 6.14743 6.20725 6.23673 6.29207 6.31512 6.39377 6.43327 6.56895 6.60037 6.82313 6.92787 7.04722 7.13950 7.32854 7.47887 7.56779 7.91855 7.97259 8.04068 8.11538 8.43256 9.11102 9.15623 9.73052 11.21577 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.004428 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.767586 B = 6321.183578 C = 7578.625775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.100 0.900 4 C -0.118 4.118 5 C -0.130 4.130 6 C -0.144 4.144 7 C -0.131 4.131 8 N -0.628 5.628 9 C 0.084 3.916 10 C 0.515 3.485 11 O -0.493 6.493 12 C -0.118 4.118 13 C 0.078 3.922 14 H 0.072 0.928 15 C -0.489 4.489 16 H 0.049 0.951 17 C 0.077 3.923 18 N -0.881 5.881 19 Si 0.883 3.117 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.278 1.278 23 C -0.022 4.022 24 C -0.114 4.114 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.129 4.129 28 C -0.119 4.119 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.259 0.741 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.837 -10.341 6.966 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 H 0.118 0.882 4 C -0.138 4.138 5 C -0.168 4.168 6 C -0.182 4.182 7 C -0.169 4.169 8 N -0.365 5.365 9 C -0.060 4.060 10 C 0.303 3.697 11 O -0.364 6.364 12 C -0.159 4.159 13 C 0.059 3.941 14 H 0.090 0.910 15 C -0.526 4.526 16 H 0.067 0.933 17 C -0.126 4.126 18 N -0.518 5.518 19 Si 0.711 3.289 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.022 4.022 24 C -0.132 4.132 25 C -0.151 4.151 26 C -0.174 4.174 27 C -0.147 4.147 28 C -0.138 4.138 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.630 -9.471 6.971 14.587 hybrid contribution 1.067 0.129 0.378 1.140 sum -7.563 -9.342 7.349 14.088 Atomic orbital electron populations 1.22091 0.95782 1.01678 1.01947 1.20937 0.93147 0.98047 0.83618 0.88248 1.22919 0.97014 0.99909 0.93914 1.22868 0.96712 1.01073 0.96192 1.22819 0.96916 1.01430 0.96992 1.22927 0.96185 1.02583 0.95195 1.48060 1.53136 1.12012 1.23303 1.21607 1.00509 0.82753 1.01127 1.20910 0.77065 0.87457 0.84273 1.90745 1.54036 1.16517 1.75138 1.21778 0.99627 1.00098 0.94359 1.17842 0.95529 0.93086 0.87594 0.90995 1.20619 1.09871 1.00371 1.21762 0.93299 1.24797 0.96906 0.96051 0.94825 1.69894 1.38208 1.06269 1.37453 0.86806 0.84521 0.77346 0.80181 1.20470 1.21435 1.20354 1.20769 0.92858 0.91878 0.96716 1.20946 0.98560 0.96591 0.97143 1.20977 1.00915 1.00043 0.93123 1.20792 1.01424 0.98144 0.97030 1.20985 0.99533 0.96526 0.97625 1.21100 1.00962 0.99553 0.92137 0.92818 0.91974 0.92458 0.89449 0.91790 0.90023 0.91708 0.90644 0.89600 0.91817 0.93502 0.91111 0.92011 0.90683 0.91859 0.93153 0.86924 0.87693 0.87829 0.87660 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.99 37.16 0.33 -1.47 16 2 C 0.15 2.07 2.47 -67.93 -0.17 1.90 16 3 H 0.10 1.72 6.71 -51.93 -0.35 1.37 16 4 C -0.12 -1.41 3.17 -89.72 -0.28 -1.70 16 5 C -0.13 -1.34 6.68 -25.92 -0.17 -1.51 16 6 C -0.14 -1.54 8.08 -25.92 -0.21 -1.75 16 7 C -0.13 -1.78 7.65 -25.83 -0.20 -1.97 16 8 N -0.63 -9.78 2.76 -173.92 -0.48 -10.26 16 9 C 0.08 0.98 9.30 59.85 0.56 1.53 16 10 C 0.51 10.46 7.42 -10.99 -0.08 10.38 16 11 O -0.49 -12.44 14.31 5.56 0.08 -12.36 16 12 C -0.12 -2.33 3.50 -27.88 -0.10 -2.43 16 13 C 0.08 1.89 1.68 -92.92 -0.16 1.73 16 14 H 0.07 2.00 6.95 -51.93 -0.36 1.64 16 15 C -0.49 -13.22 6.38 -34.44 -0.22 -13.44 16 16 H 0.05 1.32 7.82 -52.48 -0.41 0.91 16 17 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 18 N -0.88 -26.16 12.85 55.43 0.71 -25.44 16 19 Si 0.88 22.36 29.54 -169.99 -5.02 17.34 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 C -0.02 -0.48 4.77 -104.63 -0.50 -0.98 16 24 C -0.11 -2.32 8.86 -39.58 -0.35 -2.67 16 25 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 26 C -0.16 -2.73 10.05 -39.58 -0.40 -3.13 16 27 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 28 C -0.12 -2.55 9.67 -39.59 -0.38 -2.93 16 29 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 30 H 0.06 0.62 7.45 -51.93 -0.39 0.24 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.96 6.54 -51.93 -0.34 0.62 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.37 7.97 -51.93 -0.41 0.96 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 41 H 0.06 0.60 6.37 -51.93 -0.33 0.27 16 42 H 0.07 1.37 7.02 -51.93 -0.36 1.01 16 43 H 0.06 1.11 8.11 -51.93 -0.42 0.69 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.11 2.21 7.75 -52.49 -0.41 1.80 16 46 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 47 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16 48 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.46 7.95 -52.49 -0.42 2.04 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -31.72 389.17 -10.36 -42.08 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.29 Total: 4.69 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -3.22 Total: -21.91 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.23 Total: -35.70 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.72 -10.36 -42.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356692288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.493 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds