Wall clock time and date at job start Tue Mar 31 2020 10:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47009 * 2 1 4 4 C 1.53002 * 109.47243 * 120.00172 * 2 1 3 5 5 C 1.53779 * 113.61173 * 299.99956 * 4 2 1 6 6 C 1.53781 * 87.08085 * 220.01927 * 5 4 2 7 7 C 1.53781 * 87.17389 * 25.38927 * 6 5 4 8 8 N 1.46502 * 109.46754 * 240.00017 * 2 1 3 9 9 C 1.46505 * 119.99915 * 299.99877 * 8 2 1 10 10 C 1.34777 * 119.99906 * 120.00088 * 8 2 1 11 11 O 1.21278 * 119.99815 * 0.02562 * 10 8 2 12 12 C 1.50700 * 119.99831 * 179.97438 * 10 8 2 13 13 C 1.53001 * 109.46963 * 179.97438 * 12 10 8 14 14 H 1.08997 * 109.47209 * 305.00618 * 13 12 10 15 15 C 1.50705 * 109.47130 * 65.00196 * 13 12 10 16 16 H 1.08006 * 119.99582 * 29.58303 * 15 13 12 17 17 C 1.37873 * 120.00088 * 209.58291 * 15 13 12 18 18 N 1.31515 * 120.00031 * 4.94431 * 17 15 13 19 19 Si 1.86800 * 119.99833 * 184.93754 * 17 15 13 20 20 H 1.48500 * 109.47192 * 60.00333 * 19 17 15 21 21 H 1.48508 * 109.46873 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47623 * 299.99962 * 19 17 15 23 23 C 1.50703 * 109.47207 * 185.00041 * 13 12 10 24 24 C 1.38236 * 119.99722 * 296.77374 * 23 13 12 25 25 C 1.38235 * 119.99686 * 179.79201 * 24 23 13 26 26 C 1.38240 * 119.99763 * 0.43337 * 25 24 23 27 27 C 1.38233 * 120.00166 * 359.81706 * 26 25 24 28 28 C 1.38226 * 119.99712 * 117.04295 * 23 13 12 29 29 H 1.09003 * 109.47421 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46956 * 299.99962 * 1 2 3 31 31 H 1.09001 * 109.47367 * 59.99856 * 1 2 3 32 32 H 1.08998 * 112.84812 * 71.19248 * 4 2 1 33 33 H 1.09004 * 113.61926 * 105.47193 * 5 4 2 34 34 H 1.09000 * 113.61592 * 334.56905 * 5 4 2 35 35 H 1.08995 * 113.61810 * 139.98112 * 6 5 4 36 36 H 1.09001 * 113.61156 * 270.80026 * 6 5 4 37 37 H 1.08996 * 113.61158 * 89.15734 * 7 6 5 38 38 H 1.08995 * 113.61926 * 220.06461 * 7 6 5 39 39 H 1.08998 * 109.46731 * 90.00728 * 9 8 2 40 40 H 1.09002 * 109.46819 * 209.99922 * 9 8 2 41 41 H 1.09002 * 109.46886 * 330.00139 * 9 8 2 42 42 H 1.09000 * 109.47126 * 299.99906 * 12 10 8 43 43 H 1.08998 * 109.46910 * 60.00144 * 12 10 8 44 44 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 45 45 H 1.08000 * 120.00096 * 359.97438 * 24 23 13 46 46 H 1.07999 * 119.99934 * 180.27246 * 25 24 23 47 47 H 1.07998 * 119.99627 * 179.84145 * 26 25 24 48 48 H 1.07997 * 119.99914 * 180.02562 * 27 26 25 49 49 H 1.08000 * 120.00438 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5812 -0.0723 2.5657 6 6 2.9922 -0.3573 3.1065 7 6 3.4748 -0.3293 1.6467 8 7 2.0183 -0.6906 -1.1962 9 6 1.6643 -2.0933 -1.4280 10 6 2.7931 -0.0356 -2.0834 11 8 3.0865 1.1253 -1.8912 12 6 3.2958 -0.7462 -3.3136 13 6 4.1452 0.2156 -4.1468 14 1 3.5666 1.1123 -4.3687 15 6 5.3812 0.5944 -3.3722 16 1 5.8062 -0.0986 -2.6611 17 6 5.9693 1.8254 -3.5711 18 7 5.3985 2.7065 -4.3633 19 14 7.5767 2.2418 -2.7155 20 1 8.6233 1.2731 -3.1295 21 1 7.9970 3.6153 -3.0928 22 1 7.3881 2.1680 -1.2443 23 6 4.5460 -0.4554 -5.4354 24 6 5.3472 -1.5815 -5.4081 25 6 5.7112 -2.1995 -6.5898 26 6 5.2814 -1.6861 -7.7992 27 6 4.4845 -0.5569 -7.8267 28 6 4.1169 0.0586 -6.6447 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8758 -1.7982 1.2128 33 1 0.7966 -0.6300 3.0773 34 1 1.3552 0.9900 2.4733 35 1 3.3976 0.4503 3.7160 36 1 3.0893 -1.3344 3.5798 37 1 3.7676 0.6626 1.3026 38 1 4.2168 -1.0941 1.4173 39 1 0.7375 -2.1444 -1.9994 40 1 2.4627 -2.5819 -1.9864 41 1 1.5294 -2.5969 -0.4708 42 1 3.9016 -1.6024 -3.0166 43 1 2.4482 -1.0891 -3.9069 44 1 5.8125 3.5724 -4.5035 45 1 5.6863 -1.9802 -4.4634 46 1 6.3336 -3.0819 -6.5683 47 1 5.5680 -2.1674 -8.7225 48 1 4.1484 -0.1561 -8.7715 49 1 3.4942 0.9407 -6.6662 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356692288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:33 Heat of formation + Delta-G solvation = -14.664160 kcal Electronic energy + Delta-G solvation = -27114.824484 eV Core-core repulsion = 23620.413452 eV Total energy + Delta-G solvation = -3494.411033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16005 -39.99772 -39.30079 -36.47290 -35.73686 -33.49847 -32.26400 -31.50290 -30.09782 -27.69816 -27.53892 -26.65676 -26.14848 -24.62073 -23.17155 -22.52308 -21.24020 -20.25780 -19.74778 -18.49232 -17.99366 -17.27274 -17.03786 -16.49706 -16.45479 -16.02870 -15.65583 -15.50246 -15.33847 -14.57895 -14.44368 -14.01842 -13.94605 -13.77891 -13.69028 -13.63444 -13.42379 -13.33753 -13.22537 -13.12776 -12.83732 -12.79584 -12.53691 -12.52132 -12.48117 -11.94891 -11.85082 -11.69017 -11.43498 -11.29511 -11.23888 -11.07716 -10.97507 -10.53184 -10.28934 -9.54708 -9.35963 -9.19656 -8.03999 -6.06303 0.77369 0.83748 1.33362 1.36507 1.41014 2.01136 2.25520 2.44584 3.18037 3.34676 3.61539 3.76356 3.81593 3.98627 4.06130 4.24929 4.31164 4.35074 4.38740 4.40314 4.43253 4.48069 4.54538 4.59807 4.72316 4.77925 4.81764 4.83750 4.85809 4.91064 4.93267 4.95107 5.02340 5.05832 5.08325 5.17396 5.23541 5.30447 5.36722 5.37821 5.51573 5.61551 5.65822 5.77611 5.83272 5.90795 5.96833 6.17987 6.41802 6.46157 6.66060 7.00695 7.54995 7.62316 9.05597 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.004428 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.767586 B = 6321.183578 C = 7578.625775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.141 3.859 3 H 0.054 0.946 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.133 4.133 7 C -0.149 4.149 8 N -0.619 5.619 9 C 0.074 3.926 10 C 0.507 3.493 11 O -0.560 6.560 12 C -0.109 4.109 13 C 0.082 3.918 14 H 0.021 0.979 15 C -0.480 4.480 16 H 0.043 0.957 17 C 0.021 3.979 18 N -0.918 5.918 19 Si 0.932 3.068 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.282 1.282 23 C -0.045 4.045 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.147 4.147 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.253 0.747 45 H 0.115 0.885 46 H 0.142 0.858 47 H 0.145 0.855 48 H 0.132 0.868 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.335 -14.364 7.284 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.037 3.963 3 H 0.072 0.928 4 C -0.128 4.128 5 C -0.158 4.158 6 C -0.170 4.170 7 C -0.186 4.186 8 N -0.354 5.354 9 C -0.068 4.068 10 C 0.297 3.703 11 O -0.436 6.436 12 C -0.149 4.149 13 C 0.063 3.937 14 H 0.039 0.961 15 C -0.518 4.518 16 H 0.061 0.939 17 C -0.177 4.177 18 N -0.558 5.558 19 Si 0.759 3.241 20 H -0.190 1.190 21 H -0.214 1.214 22 H -0.208 1.208 23 C -0.046 4.046 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.165 4.165 27 C -0.146 4.146 28 C -0.163 4.163 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.133 0.867 46 H 0.160 0.840 47 H 0.162 0.838 48 H 0.150 0.850 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.153 -13.562 7.313 17.921 hybrid contribution 1.162 1.280 0.245 1.746 sum -7.990 -12.282 7.558 16.487 Atomic orbital electron populations 1.22015 0.93161 1.03335 1.02002 1.21050 0.95064 0.96082 0.84074 0.92756 1.22931 0.95496 1.00974 0.93425 1.22828 0.97276 1.00909 0.94823 1.22810 0.96682 1.02665 0.94841 1.22929 0.97312 1.00145 0.98250 1.48061 1.51251 1.13552 1.22507 1.21942 1.01450 0.80073 1.03309 1.21088 0.77346 0.86822 0.85092 1.90722 1.57005 1.19231 1.76656 1.21633 1.00016 0.99313 0.93956 1.17608 0.94282 0.92576 0.89239 0.96103 1.20899 1.10175 0.99835 1.20928 0.93873 1.25486 0.99777 0.96504 0.95975 1.70051 1.39557 1.06436 1.39706 0.86019 0.81878 0.77339 0.78850 1.19015 1.21407 1.20844 1.20555 0.94799 0.93483 0.95770 1.21027 0.98563 0.96265 0.98570 1.21378 1.00184 1.00570 0.92217 1.21269 0.99553 0.97072 0.98559 1.21284 0.99158 0.96714 0.97450 1.21099 1.02126 0.99655 0.93427 0.90175 0.90194 0.94254 0.87017 0.88818 0.90862 0.91748 0.88416 0.93638 0.92639 0.91608 0.90754 0.88983 0.88900 0.89601 0.93837 0.86720 0.84040 0.83767 0.85039 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.99 71.98 0.65 -2.52 16 2 C 0.14 4.01 2.47 44.99 0.11 4.12 16 3 H 0.05 2.06 6.71 -2.39 -0.02 2.04 16 4 C -0.11 -2.45 3.17 -10.21 -0.03 -2.48 16 5 C -0.12 -2.20 6.68 31.12 0.21 -1.99 16 6 C -0.13 -2.62 8.08 31.12 0.25 -2.37 16 7 C -0.15 -4.11 7.65 31.18 0.24 -3.87 16 8 N -0.62 -19.29 2.76 -822.56 -2.27 -21.57 16 9 C 0.07 1.53 9.30 127.77 1.19 2.72 16 10 C 0.51 21.72 7.42 87.66 0.65 22.37 16 11 O -0.56 -30.74 14.31 -3.02 -0.04 -30.78 16 12 C -0.11 -4.42 3.50 29.85 0.10 -4.32 16 13 C 0.08 4.18 1.68 -12.28 -0.02 4.16 16 14 H 0.02 1.26 6.95 -2.39 -0.02 1.24 16 15 C -0.48 -27.27 6.38 25.60 0.16 -27.11 16 16 H 0.04 2.43 7.82 -2.91 -0.02 2.40 16 17 C 0.02 1.25 5.45 84.65 0.46 1.71 16 18 N -0.92 -58.09 12.85 21.45 0.28 -57.81 16 19 Si 0.93 47.78 29.54 68.60 2.03 49.80 16 20 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 22 H -0.28 -14.51 7.11 99.48 0.71 -13.80 16 23 C -0.05 -2.07 4.77 -19.87 -0.09 -2.17 16 24 C -0.13 -4.99 8.86 22.27 0.20 -4.79 16 25 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 26 C -0.15 -4.58 10.05 22.27 0.22 -4.36 16 27 C -0.13 -4.56 10.05 22.27 0.22 -4.33 16 28 C -0.14 -6.35 9.67 22.27 0.22 -6.13 16 29 H 0.08 1.32 7.67 -2.39 -0.02 1.30 16 30 H 0.08 1.45 7.45 -2.39 -0.02 1.43 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 2.01 6.54 -2.39 -0.02 1.99 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.61 7.97 -2.39 -0.02 1.59 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.51 6.44 -2.39 -0.02 1.50 16 41 H 0.09 1.38 6.37 -2.39 -0.02 1.36 16 42 H 0.09 3.38 7.02 -2.39 -0.02 3.36 16 43 H 0.09 3.03 8.11 -2.39 -0.02 3.01 16 44 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.11 4.38 7.75 -2.91 -0.02 4.36 16 46 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 47 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 48 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 49 H 0.09 4.29 7.95 -2.91 -0.02 4.27 16 Total: -1.00 -76.85 389.17 5.85 -71.00 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.91 Total: 24.61 kcal Atomic # 6 Polarization: -40.22 SS G_CDS: 4.96 Total: -35.26 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -2.00 Total: -79.38 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.04 Total: -30.78 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.80 kcal Total: -76.85 5.85 -71.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356692288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.336 kcal (2) G-P(sol) polarization free energy of solvation -76.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds