Wall clock time and date at job start Tue Mar 31 2020 10:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09009 * 109.47575 * 2 1 4 4 C 1.53004 * 109.47235 * 119.99780 * 2 1 3 5 5 C 1.53781 * 113.61386 * 282.72304 * 4 2 1 6 6 C 1.53775 * 87.08226 * 220.01664 * 5 4 2 7 7 C 1.53774 * 113.61991 * 185.22422 * 4 2 1 8 8 N 1.46498 * 109.47576 * 239.99841 * 2 1 3 9 9 C 1.46507 * 119.99873 * 300.00039 * 8 2 1 10 10 C 1.34770 * 120.00474 * 120.00012 * 8 2 1 11 11 O 1.21287 * 120.00072 * 0.02562 * 10 8 2 12 12 C 1.50700 * 120.00659 * 180.02562 * 10 8 2 13 13 C 1.52998 * 109.47522 * 180.02562 * 12 10 8 14 14 H 1.08993 * 109.47203 * 55.00391 * 13 12 10 15 15 C 1.50704 * 109.46998 * 294.99900 * 13 12 10 16 16 H 1.07998 * 119.99844 * 327.35473 * 15 13 12 17 17 C 1.37869 * 119.99716 * 147.34884 * 15 13 12 18 18 N 1.31519 * 120.00122 * 5.29799 * 17 15 13 19 19 Si 1.86804 * 120.00127 * 185.29644 * 17 15 13 20 20 H 1.48499 * 109.47042 * 59.99788 * 19 17 15 21 21 H 1.48497 * 109.47541 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46701 * 300.00092 * 19 17 15 23 23 C 1.50704 * 109.46778 * 175.00227 * 13 12 10 24 24 C 1.38237 * 119.99662 * 245.63512 * 23 13 12 25 25 C 1.38233 * 119.99929 * 179.97438 * 24 23 13 26 26 C 1.38242 * 119.99765 * 359.97397 * 25 24 23 27 27 C 1.38230 * 120.00221 * 0.02562 * 26 25 24 28 28 C 1.38230 * 120.00148 * 65.66103 * 23 13 12 29 29 H 1.09001 * 109.47566 * 184.85157 * 1 2 3 30 30 H 1.09000 * 109.47582 * 304.85866 * 1 2 3 31 31 H 1.09003 * 109.47175 * 64.85596 * 1 2 3 32 32 H 1.09002 * 112.84918 * 54.02421 * 4 2 1 33 33 H 1.09005 * 113.61232 * 334.56110 * 5 4 2 34 34 H 1.09003 * 113.61578 * 105.46550 * 5 4 2 35 35 H 1.09005 * 113.61578 * 270.88169 * 6 5 4 36 36 H 1.08998 * 113.69551 * 139.99244 * 6 5 4 37 37 H 1.09004 * 113.61466 * 254.53134 * 7 4 2 38 38 H 1.09009 * 113.61189 * 25.42762 * 7 4 2 39 39 H 1.08997 * 109.47468 * 270.00263 * 9 8 2 40 40 H 1.08998 * 109.46627 * 29.99800 * 9 8 2 41 41 H 1.08996 * 109.46922 * 149.99617 * 9 8 2 42 42 H 1.08999 * 109.46499 * 59.99582 * 12 10 8 43 43 H 1.09000 * 109.47073 * 300.00093 * 12 10 8 44 44 H 0.97004 * 119.99524 * 179.97438 * 18 17 15 45 45 H 1.08001 * 119.99961 * 0.02562 * 24 23 13 46 46 H 1.08004 * 120.00027 * 180.02562 * 25 24 23 47 47 H 1.07999 * 119.99674 * 179.72784 * 26 25 24 48 48 H 1.07991 * 120.00259 * 179.97438 * 27 26 25 49 49 H 1.08000 * 120.00280 * 0.02562 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.9527 0.1270 2.5290 6 6 3.3224 -0.4560 2.9147 7 6 3.5681 -0.6667 1.4114 8 7 2.0183 -0.6906 -1.1961 9 6 1.6645 -2.0933 -1.4279 10 6 2.7932 -0.0357 -2.0832 11 8 3.0866 1.1253 -1.8912 12 6 3.2952 -0.7459 -3.3140 13 6 4.1458 0.2154 -4.1464 14 1 4.9426 0.6257 -3.5261 15 6 3.2799 1.3373 -4.6589 16 1 2.2428 1.1532 -4.8974 17 6 3.8116 2.5987 -4.8231 18 7 5.0972 2.8003 -4.6327 19 14 2.7060 4.0215 -5.3159 20 1 1.6511 4.2079 -4.2875 21 1 3.5150 5.2619 -5.4264 22 1 2.0731 3.7256 -6.6263 23 6 4.7479 -0.5269 -5.3116 24 6 6.1175 -0.6979 -5.3888 25 6 6.6698 -1.3792 -6.4572 26 6 5.8524 -1.8900 -7.4482 27 6 4.4829 -1.7190 -7.3710 28 6 3.9308 -1.0362 -6.3033 29 1 -0.3634 -1.0240 0.0869 30 1 -0.3634 0.5873 0.8432 31 1 -0.3634 0.4367 -0.9303 32 1 1.6247 -1.7231 1.3588 33 1 1.9720 1.2009 2.3432 34 1 1.1462 -0.1734 3.1979 35 1 3.2577 -1.3851 3.4810 36 1 3.9954 0.2708 3.3696 37 1 4.0659 -1.6080 1.1780 38 1 4.0291 0.1902 0.9200 39 1 2.4157 -2.7378 -0.9715 40 1 0.6905 -2.3002 -0.9846 41 1 1.6238 -2.2853 -2.5001 42 1 2.4472 -1.0882 -3.9071 43 1 3.9006 -1.6026 -3.0176 44 1 5.4713 3.6878 -4.7486 45 1 6.7559 -0.2999 -4.6139 46 1 7.7398 -1.5132 -6.5173 47 1 6.2843 -2.4185 -8.2852 48 1 3.8445 -2.1176 -8.1453 49 1 2.8609 -0.9019 -6.2434 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356692289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:36 Heat of formation + Delta-G solvation = -15.029431 kcal Electronic energy + Delta-G solvation = -27121.042436 eV Core-core repulsion = 23626.615564 eV Total energy + Delta-G solvation = -3494.426872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.17202 -39.98288 -39.26762 -36.47416 -35.73370 -33.50036 -32.29762 -31.49514 -30.09701 -27.69422 -27.50263 -26.58674 -26.22912 -24.61985 -23.15843 -22.49605 -21.22801 -20.28550 -19.74337 -18.48389 -17.99808 -17.28163 -17.00980 -16.51684 -16.33408 -16.08663 -15.81143 -15.46009 -15.32265 -14.59103 -14.44815 -14.09062 -13.94576 -13.67230 -13.61661 -13.58454 -13.40817 -13.32341 -13.23346 -13.08445 -12.88254 -12.81620 -12.63358 -12.51926 -12.47326 -11.94957 -11.82882 -11.66963 -11.43482 -11.32119 -11.25021 -11.07729 -10.94692 -10.56876 -10.26231 -9.53741 -9.36537 -9.18043 -8.04507 -6.06815 0.78349 0.84873 1.33040 1.38000 1.42215 2.01348 2.24541 2.45126 3.19130 3.35408 3.65040 3.76782 3.81296 4.00177 4.04828 4.25776 4.33509 4.35077 4.38186 4.39913 4.43118 4.46017 4.54894 4.60465 4.73279 4.77869 4.80389 4.84072 4.86633 4.88001 4.94424 4.97429 5.02943 5.05614 5.08219 5.15453 5.25546 5.29788 5.36383 5.38038 5.52896 5.63219 5.64655 5.77890 5.84023 5.89483 5.96886 6.17592 6.42554 6.47165 6.66444 7.00367 7.55482 7.62096 9.05235 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011944 B = 0.004401 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.711590 B = 6360.242227 C = 7480.704836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.140 3.860 3 H 0.054 0.946 4 C -0.106 4.106 5 C -0.127 4.127 6 C -0.133 4.133 7 C -0.142 4.142 8 N -0.617 5.617 9 C 0.075 3.925 10 C 0.509 3.491 11 O -0.562 6.562 12 C -0.110 4.110 13 C 0.084 3.916 14 H 0.019 0.981 15 C -0.481 4.481 16 H 0.044 0.956 17 C 0.022 3.978 18 N -0.918 5.918 19 Si 0.934 3.066 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.265 1.265 23 C -0.044 4.044 24 C -0.144 4.144 25 C -0.128 4.128 26 C -0.147 4.147 27 C -0.126 4.126 28 C -0.126 4.126 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.253 0.747 45 H 0.091 0.909 46 H 0.132 0.868 47 H 0.144 0.856 48 H 0.141 0.859 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 -15.024 8.729 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.037 3.963 3 H 0.072 0.928 4 C -0.125 4.125 5 C -0.165 4.165 6 C -0.170 4.170 7 C -0.179 4.179 8 N -0.351 5.351 9 C -0.067 4.067 10 C 0.298 3.702 11 O -0.438 6.438 12 C -0.150 4.150 13 C 0.065 3.935 14 H 0.037 0.963 15 C -0.519 4.519 16 H 0.063 0.937 17 C -0.176 4.176 18 N -0.558 5.558 19 Si 0.761 3.239 20 H -0.211 1.211 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.044 4.044 24 C -0.163 4.163 25 C -0.146 4.146 26 C -0.165 4.165 27 C -0.144 4.144 28 C -0.144 4.144 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.133 0.867 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.110 0.890 46 H 0.150 0.850 47 H 0.162 0.838 48 H 0.159 0.841 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.849 -14.260 8.813 18.109 hybrid contribution -0.050 1.707 -0.309 1.735 sum -6.899 -12.553 8.504 16.658 Atomic orbital electron populations 1.22037 0.93467 1.03475 1.01789 1.21045 0.94942 0.96056 0.84260 0.92768 1.22885 0.95582 1.00576 0.93436 1.22847 0.98285 0.98941 0.96417 1.22812 0.97234 1.01828 0.95160 1.22801 0.96827 1.00686 0.97613 1.48023 1.51287 1.13497 1.22330 1.21935 1.02014 0.79899 1.02873 1.21059 0.77760 0.86630 0.84724 1.90713 1.57964 1.18865 1.76305 1.21641 1.00807 0.98469 0.94043 1.17600 0.94380 0.91161 0.90382 0.96286 1.20908 0.95208 0.93877 1.41920 0.93732 1.25483 0.95657 1.00820 0.95690 1.70056 1.12488 1.21934 1.51360 0.85992 0.79335 0.79956 0.78609 1.21061 1.21438 1.18963 1.20548 0.93433 0.92632 0.97804 1.21089 0.95132 1.00572 0.99474 1.21279 1.00280 0.98537 0.94483 1.21262 0.93679 1.02080 0.99492 1.21369 0.95777 0.99285 0.97952 1.21021 0.99714 0.98952 0.94750 0.89867 0.90460 0.94349 0.86711 0.91631 0.89036 0.88114 0.92026 0.91660 0.93994 0.91787 0.88914 0.90773 0.88869 0.89685 0.93838 0.89027 0.85040 0.83800 0.84110 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.00 71.98 0.65 -2.66 16 2 C 0.14 3.97 2.35 44.99 0.11 4.08 16 3 H 0.05 2.04 6.81 -2.38 -0.02 2.02 16 4 C -0.11 -2.28 2.84 -10.27 -0.03 -2.31 16 5 C -0.13 -2.44 7.56 31.12 0.24 -2.20 16 6 C -0.13 -2.57 8.08 31.12 0.25 -2.32 16 7 C -0.14 -3.63 7.51 31.12 0.23 -3.39 16 8 N -0.62 -19.07 2.63 -822.59 -2.16 -21.23 16 9 C 0.07 1.54 9.52 127.77 1.22 2.75 16 10 C 0.51 21.64 7.42 87.66 0.65 22.29 16 11 O -0.56 -30.62 14.31 -3.05 -0.04 -30.67 16 12 C -0.11 -4.43 3.53 29.85 0.11 -4.32 16 13 C 0.08 4.27 1.65 -12.28 -0.02 4.25 16 14 H 0.02 1.14 7.01 -2.39 -0.02 1.13 16 15 C -0.48 -27.23 6.27 25.60 0.16 -27.07 16 16 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 17 C 0.02 1.31 5.45 84.65 0.46 1.77 16 18 N -0.92 -58.03 12.88 21.45 0.28 -57.76 16 19 Si 0.93 47.96 29.54 68.60 2.03 49.99 16 20 H -0.28 -14.76 7.11 99.48 0.71 -14.05 16 21 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 22 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 23 C -0.04 -1.99 4.77 -19.87 -0.09 -2.09 16 24 C -0.14 -6.34 9.67 22.27 0.22 -6.12 16 25 C -0.13 -4.56 10.05 22.27 0.22 -4.34 16 26 C -0.15 -4.64 10.05 22.27 0.22 -4.42 16 27 C -0.13 -4.16 10.05 22.27 0.22 -3.94 16 28 C -0.13 -5.04 8.89 22.27 0.20 -4.84 16 29 H 0.08 1.35 6.87 -2.39 -0.02 1.33 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 1.89 8.02 -2.39 -0.02 1.87 16 33 H 0.06 1.48 8.04 -2.38 -0.02 1.46 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.04 1.43 8.10 -2.38 -0.02 1.41 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.38 6.53 -2.39 -0.02 1.36 16 41 H 0.07 1.50 6.44 -2.39 -0.02 1.49 16 42 H 0.09 3.38 7.19 -2.39 -0.02 3.36 16 43 H 0.08 3.01 8.11 -2.39 -0.02 2.99 16 44 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.09 4.27 7.95 -2.91 -0.02 4.24 16 46 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 47 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 48 H 0.14 3.63 8.06 -2.92 -0.02 3.61 16 49 H 0.11 4.41 7.83 -2.91 -0.02 4.39 16 Total: -1.00 -76.44 391.55 6.01 -70.43 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.90 Total: 24.12 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 5.01 Total: -34.89 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -1.89 Total: -78.99 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.04 Total: -30.67 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -76.44 6.01 -70.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356692289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.401 kcal (2) G-P(sol) polarization free energy of solvation -76.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds