Wall clock time and date at job start Tue Mar 31 2020 11:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47225 * 2 1 4 4 C 1.52997 * 109.46962 * 120.00773 * 2 1 3 5 5 C 1.53004 * 109.46641 * 184.99859 * 4 2 1 6 6 C 1.53008 * 109.46790 * 179.97438 * 5 4 2 7 7 C 1.53001 * 117.49854 * 243.74503 * 6 5 4 8 8 C 1.53000 * 117.49810 * 175.08754 * 6 5 4 9 9 N 1.46498 * 109.46818 * 240.00318 * 2 1 3 10 10 C 1.34781 * 120.00015 * 85.00250 * 9 2 1 11 11 O 1.21278 * 120.00134 * 0.02562 * 10 9 2 12 12 C 1.50698 * 120.00180 * 179.97438 * 10 9 2 13 13 C 1.52998 * 109.47230 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46740 * 304.99680 * 13 12 10 15 15 C 1.50694 * 109.47411 * 65.00065 * 13 12 10 16 16 H 1.07998 * 119.99920 * 29.58370 * 15 13 12 17 17 C 1.37875 * 120.00115 * 209.58620 * 15 13 12 18 18 N 1.31519 * 119.99794 * 4.93748 * 17 15 13 19 19 Si 1.86799 * 120.00383 * 184.93661 * 17 15 13 20 20 H 1.48499 * 109.47011 * 89.99509 * 19 17 15 21 21 H 1.48494 * 109.47388 * 210.00559 * 19 17 15 22 22 H 1.48511 * 109.46661 * 329.99972 * 19 17 15 23 23 C 1.50707 * 109.47038 * 185.00338 * 13 12 10 24 24 C 1.38231 * 119.99576 * 296.76748 * 23 13 12 25 25 C 1.38232 * 119.99793 * 179.79385 * 24 23 13 26 26 C 1.38241 * 120.00116 * 0.43641 * 25 24 23 27 27 C 1.38234 * 119.99872 * 359.81291 * 26 25 24 28 28 C 1.38231 * 120.00092 * 117.04089 * 23 13 12 29 29 H 1.09000 * 109.46825 * 299.99677 * 1 2 3 30 30 H 1.08998 * 109.47710 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47067 * 59.99297 * 1 2 3 32 32 H 1.09004 * 109.47227 * 304.99079 * 4 2 1 33 33 H 1.08998 * 109.47636 * 64.99904 * 4 2 1 34 34 H 1.08996 * 109.47240 * 299.99354 * 5 4 2 35 35 H 1.08999 * 109.47563 * 59.99882 * 5 4 2 36 36 H 1.08994 * 115.54990 * 29.42014 * 6 5 4 37 37 H 1.09001 * 117.49866 * 359.97438 * 7 6 5 38 38 H 1.08996 * 117.49738 * 145.01947 * 7 6 5 39 39 H 1.09002 * 117.49993 * 214.98132 * 8 6 5 40 40 H 1.09004 * 117.49628 * 359.97438 * 8 6 5 41 41 H 0.97001 * 120.00560 * 265.00149 * 9 2 1 42 42 H 1.08999 * 109.47045 * 300.00213 * 12 10 9 43 43 H 1.09003 * 109.47279 * 60.00113 * 12 10 9 44 44 H 0.97001 * 119.99863 * 179.97438 * 18 17 15 45 45 H 1.08006 * 120.00397 * 359.97438 * 24 23 13 46 46 H 1.08001 * 120.00174 * 180.27288 * 25 24 23 47 47 H 1.08002 * 120.00144 * 179.84193 * 26 25 24 48 48 H 1.07999 * 120.00091 * 179.97438 * 27 26 25 49 49 H 1.07999 * 120.00025 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5648 -0.6134 1.3135 6 6 4.0748 -1.3343 2.5631 7 6 4.7741 -0.4897 3.6300 8 6 5.5898 -1.4394 2.7492 9 7 2.0182 -0.6905 -1.1962 10 6 2.1470 -0.0181 -2.3572 11 8 1.8591 1.1588 -2.4115 12 6 2.6498 -0.7283 -3.5876 13 6 2.7018 0.2550 -4.7586 14 1 1.7220 0.7138 -4.8914 15 6 3.7228 1.3254 -4.4709 16 1 4.5806 1.1015 -3.8540 17 6 3.5619 2.5904 -4.9951 18 7 2.4705 2.8908 -5.6646 19 14 4.8940 3.8776 -4.7544 20 1 5.8618 3.8046 -5.8784 21 1 4.2771 5.2278 -4.7191 22 1 5.6023 3.6234 -3.4740 23 6 3.0864 -0.4812 -6.0161 24 6 4.3238 -1.0902 -6.1093 25 6 4.6749 -1.7691 -7.2610 26 6 3.7922 -1.8314 -8.3231 27 6 2.5567 -1.2180 -8.2318 28 6 2.2039 -0.5427 -7.0783 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 -0.8900 32 1 1.6054 -0.2619 2.1370 33 1 1.7516 -1.7717 1.2054 34 1 3.9994 -1.0729 0.4258 35 1 3.8532 0.4368 1.3572 36 1 3.4666 -2.1724 2.9034 37 1 4.8713 0.5795 3.4416 38 1 4.6263 -0.7722 4.6723 39 1 5.9783 -2.3464 3.2123 40 1 6.2232 -0.9953 1.9812 41 1 2.2489 -1.6317 -1.1528 42 1 3.6491 -1.1201 -3.3980 43 1 1.9775 -1.5505 -3.8327 44 1 2.3571 3.7809 -6.0331 45 1 5.0152 -1.0380 -5.2812 46 1 5.6400 -2.2486 -7.3323 47 1 4.0675 -2.3597 -9.2239 48 1 1.8672 -1.2663 -9.0616 49 1 1.2387 -0.0635 -7.0069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356777180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:14 Heat of formation + Delta-G solvation = -12.783877 kcal Electronic energy + Delta-G solvation = -26193.677756 eV Core-core repulsion = 22699.348259 eV Total energy + Delta-G solvation = -3494.329498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.26553 -38.31144 -37.74630 -35.68364 -33.86358 -31.82136 -31.27693 -29.99084 -29.73443 -28.48481 -25.52408 -24.33366 -22.82734 -22.51409 -21.62754 -20.88471 -20.49852 -19.97064 -19.17440 -16.61950 -16.25997 -15.97205 -15.67715 -15.61305 -14.57314 -14.36291 -14.24149 -14.17425 -13.97359 -13.76595 -13.26305 -13.04816 -12.76273 -12.51743 -12.30055 -12.11466 -11.87740 -11.75376 -11.68118 -11.60792 -11.52074 -11.36575 -11.15062 -10.85420 -10.74381 -10.60542 -10.54235 -10.24326 -10.22361 -10.00056 -9.97033 -9.39417 -9.06139 -8.73633 -8.46781 -8.27581 -8.02670 -7.59376 -5.88899 -3.87756 2.30708 2.36574 3.39357 3.45310 3.47632 3.64415 3.65582 3.81263 4.42597 4.54697 4.77016 4.77129 4.79614 4.97198 5.09006 5.23747 5.40831 5.45184 5.47875 5.56856 5.66960 5.67800 5.71141 5.75067 5.76926 5.84152 5.86148 5.89966 5.95671 5.96904 6.08027 6.14798 6.24815 6.27431 6.31303 6.36341 6.43123 6.44657 6.57022 6.84308 6.94067 7.06880 7.09825 7.32864 7.48004 7.56755 7.92236 7.97266 8.09130 8.22111 8.43228 9.11300 9.20875 9.72915 11.21290 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.003576 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.967623 B = 7829.006909 C = 8375.574501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.085 0.915 4 C -0.120 4.120 5 C -0.091 4.091 6 C -0.150 4.150 7 C -0.184 4.184 8 C -0.184 4.184 9 N -0.745 5.745 10 C 0.512 3.488 11 O -0.494 6.494 12 C -0.122 4.122 13 C 0.079 3.921 14 H 0.072 0.928 15 C -0.488 4.488 16 H 0.049 0.951 17 C 0.077 3.923 18 N -0.881 5.881 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.022 4.022 24 C -0.115 4.115 25 C -0.133 4.133 26 C -0.156 4.156 27 C -0.129 4.129 28 C -0.119 4.119 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.390 0.610 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.258 0.742 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.220 -11.742 11.648 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.128 4.128 6 C -0.168 4.168 7 C -0.221 4.221 8 C -0.221 4.221 9 N -0.401 5.401 10 C 0.298 3.702 11 O -0.365 6.365 12 C -0.162 4.162 13 C 0.060 3.940 14 H 0.090 0.910 15 C -0.526 4.526 16 H 0.068 0.932 17 C -0.126 4.126 18 N -0.518 5.518 19 Si 0.713 3.287 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.023 4.023 24 C -0.133 4.133 25 C -0.151 4.151 26 C -0.174 4.174 27 C -0.147 4.147 28 C -0.138 4.138 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.223 0.777 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.091 -10.659 11.494 15.676 hybrid contribution 0.982 0.382 0.051 1.055 sum 0.891 -10.278 11.544 15.482 Atomic orbital electron populations 1.22167 0.96022 1.01519 1.02298 1.20801 0.93455 0.97776 0.84270 0.89740 1.21844 0.95509 1.00830 0.97575 1.21202 0.95323 1.00279 0.95985 1.22377 0.94619 1.01694 0.98080 1.23044 1.05124 0.97734 0.96163 1.22975 0.94190 1.01610 1.03316 1.46290 1.70355 1.13463 1.09958 1.20868 0.77512 0.87790 0.84022 1.90761 1.46364 1.15277 1.84134 1.21765 1.00453 0.99179 0.94852 1.17828 1.00674 0.90546 0.84955 0.90966 1.20660 1.07064 0.94215 1.30631 0.93230 1.24806 0.94890 0.97964 0.94977 1.69906 1.25097 1.20581 1.36219 0.86725 0.82303 0.81462 0.78241 1.20921 1.21379 1.20102 1.20779 0.92468 0.91045 0.97990 1.20952 0.96824 0.98021 0.97463 1.20979 0.98710 1.00933 0.94451 1.20795 0.95189 1.02984 0.98422 1.20987 0.96597 0.99349 0.97746 1.21103 1.00072 0.99031 0.93556 0.92404 0.92963 0.91837 0.90873 0.91679 0.91068 0.91672 0.88024 0.88809 0.89192 0.89095 0.88728 0.77705 0.90696 0.91815 0.93215 0.86879 0.87688 0.87829 0.87659 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 2 C 0.14 1.89 2.57 -67.93 -0.17 1.71 16 3 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 4 C -0.12 -1.18 4.71 -26.73 -0.13 -1.31 16 5 C -0.09 -0.95 5.38 -26.72 -0.14 -1.10 16 6 C -0.15 -1.37 5.73 -90.61 -0.52 -1.89 16 7 C -0.18 -1.62 10.18 -26.69 -0.27 -1.90 16 8 C -0.18 -1.66 10.25 -26.69 -0.27 -1.93 16 9 N -0.75 -10.79 4.53 -53.81 -0.24 -11.04 16 10 C 0.51 10.06 7.54 -10.98 -0.08 9.98 16 11 O -0.49 -12.30 14.65 5.56 0.08 -12.22 16 12 C -0.12 -2.35 4.94 -27.88 -0.14 -2.49 16 13 C 0.08 1.89 1.68 -92.92 -0.16 1.73 16 14 H 0.07 2.00 6.95 -51.93 -0.36 1.64 16 15 C -0.49 -13.15 6.38 -34.44 -0.22 -13.37 16 16 H 0.05 1.34 7.82 -52.49 -0.41 0.93 16 17 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 18 N -0.88 -26.09 12.85 55.43 0.71 -25.38 16 19 Si 0.88 22.34 29.54 -169.99 -5.02 17.32 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 24 C -0.11 -2.32 8.86 -39.59 -0.35 -2.67 16 25 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 26 C -0.16 -2.73 10.05 -39.58 -0.40 -3.13 16 27 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 28 C -0.12 -2.54 9.67 -39.58 -0.38 -2.93 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 35 H 0.06 0.77 7.87 -51.93 -0.41 0.36 16 36 H 0.10 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.39 4.50 8.60 -40.82 -0.35 4.15 16 42 H 0.07 1.33 7.76 -51.93 -0.40 0.93 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.11 2.20 7.75 -52.48 -0.41 1.80 16 46 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 47 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16 48 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.45 7.95 -52.49 -0.42 2.03 16 LS Contribution 402.56 15.07 6.07 6.07 Total: -1.00 -31.81 402.56 -11.28 -43.09 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -8.60 Total: 7.61 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -4.28 Total: -25.46 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.47 Total: -36.41 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.81 -11.28 -43.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356777180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.305 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds