Wall clock time and date at job start Tue Mar 31 2020 11:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47225 * 2 1 4 4 C 1.52997 * 109.46962 * 120.00773 * 2 1 3 5 5 C 1.53004 * 109.46641 * 184.99859 * 4 2 1 6 6 C 1.53008 * 109.46790 * 179.97438 * 5 4 2 7 7 C 1.53001 * 117.49854 * 243.74503 * 6 5 4 8 8 C 1.53000 * 117.49810 * 175.08754 * 6 5 4 9 9 N 1.46498 * 109.46818 * 240.00318 * 2 1 3 10 10 C 1.34781 * 120.00015 * 85.00250 * 9 2 1 11 11 O 1.21278 * 120.00134 * 0.02562 * 10 9 2 12 12 C 1.50698 * 120.00180 * 179.97438 * 10 9 2 13 13 C 1.52998 * 109.47230 * 180.02562 * 12 10 9 14 14 H 1.09001 * 109.46740 * 304.99680 * 13 12 10 15 15 C 1.50694 * 109.47411 * 65.00065 * 13 12 10 16 16 H 1.07998 * 119.99920 * 29.58370 * 15 13 12 17 17 C 1.37875 * 120.00115 * 209.58620 * 15 13 12 18 18 N 1.31519 * 119.99794 * 4.93748 * 17 15 13 19 19 Si 1.86799 * 120.00383 * 184.93661 * 17 15 13 20 20 H 1.48499 * 109.47011 * 89.99509 * 19 17 15 21 21 H 1.48494 * 109.47388 * 210.00559 * 19 17 15 22 22 H 1.48511 * 109.46661 * 329.99972 * 19 17 15 23 23 C 1.50707 * 109.47038 * 185.00338 * 13 12 10 24 24 C 1.38231 * 119.99576 * 296.76748 * 23 13 12 25 25 C 1.38232 * 119.99793 * 179.79385 * 24 23 13 26 26 C 1.38241 * 120.00116 * 0.43641 * 25 24 23 27 27 C 1.38234 * 119.99872 * 359.81291 * 26 25 24 28 28 C 1.38231 * 120.00092 * 117.04089 * 23 13 12 29 29 H 1.09000 * 109.46825 * 299.99677 * 1 2 3 30 30 H 1.08998 * 109.47710 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47067 * 59.99297 * 1 2 3 32 32 H 1.09004 * 109.47227 * 304.99079 * 4 2 1 33 33 H 1.08998 * 109.47636 * 64.99904 * 4 2 1 34 34 H 1.08996 * 109.47240 * 299.99354 * 5 4 2 35 35 H 1.08999 * 109.47563 * 59.99882 * 5 4 2 36 36 H 1.08994 * 115.54990 * 29.42014 * 6 5 4 37 37 H 1.09001 * 117.49866 * 359.97438 * 7 6 5 38 38 H 1.08996 * 117.49738 * 145.01947 * 7 6 5 39 39 H 1.09002 * 117.49993 * 214.98132 * 8 6 5 40 40 H 1.09004 * 117.49628 * 359.97438 * 8 6 5 41 41 H 0.97001 * 120.00560 * 265.00149 * 9 2 1 42 42 H 1.08999 * 109.47045 * 300.00213 * 12 10 9 43 43 H 1.09003 * 109.47279 * 60.00113 * 12 10 9 44 44 H 0.97001 * 119.99863 * 179.97438 * 18 17 15 45 45 H 1.08006 * 120.00397 * 359.97438 * 24 23 13 46 46 H 1.08001 * 120.00174 * 180.27288 * 25 24 23 47 47 H 1.08002 * 120.00144 * 179.84193 * 26 25 24 48 48 H 1.07999 * 120.00091 * 179.97438 * 27 26 25 49 49 H 1.07999 * 120.00025 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5648 -0.6134 1.3135 6 6 4.0748 -1.3343 2.5631 7 6 4.7741 -0.4897 3.6300 8 6 5.5898 -1.4394 2.7492 9 7 2.0182 -0.6905 -1.1962 10 6 2.1470 -0.0181 -2.3572 11 8 1.8591 1.1588 -2.4115 12 6 2.6498 -0.7283 -3.5876 13 6 2.7018 0.2550 -4.7586 14 1 1.7220 0.7138 -4.8914 15 6 3.7228 1.3254 -4.4709 16 1 4.5806 1.1015 -3.8540 17 6 3.5619 2.5904 -4.9951 18 7 2.4705 2.8908 -5.6646 19 14 4.8940 3.8776 -4.7544 20 1 5.8618 3.8046 -5.8784 21 1 4.2771 5.2278 -4.7191 22 1 5.6023 3.6234 -3.4740 23 6 3.0864 -0.4812 -6.0161 24 6 4.3238 -1.0902 -6.1093 25 6 4.6749 -1.7691 -7.2610 26 6 3.7922 -1.8314 -8.3231 27 6 2.5567 -1.2180 -8.2318 28 6 2.2039 -0.5427 -7.0783 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 -0.8900 32 1 1.6054 -0.2619 2.1370 33 1 1.7516 -1.7717 1.2054 34 1 3.9994 -1.0729 0.4258 35 1 3.8532 0.4368 1.3572 36 1 3.4666 -2.1724 2.9034 37 1 4.8713 0.5795 3.4416 38 1 4.6263 -0.7722 4.6723 39 1 5.9783 -2.3464 3.2123 40 1 6.2232 -0.9953 1.9812 41 1 2.2489 -1.6317 -1.1528 42 1 3.6491 -1.1201 -3.3980 43 1 1.9775 -1.5505 -3.8327 44 1 2.3571 3.7809 -6.0331 45 1 5.0152 -1.0380 -5.2812 46 1 5.6400 -2.2486 -7.3323 47 1 4.0675 -2.3597 -9.2239 48 1 1.8672 -1.2663 -9.0616 49 1 1.2387 -0.0635 -7.0069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356777180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:12 Heat of formation + Delta-G solvation = -29.112051 kcal Electronic energy + Delta-G solvation = -26194.385799 eV Core-core repulsion = 22699.348259 eV Total energy + Delta-G solvation = -3495.037540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.75723 -39.77617 -38.66066 -36.90843 -35.67162 -33.50274 -32.80305 -31.49761 -30.84221 -29.94844 -27.43645 -25.36166 -24.46734 -23.21991 -23.13800 -22.12075 -21.43417 -21.19340 -20.82141 -18.51304 -17.92159 -17.13292 -17.10203 -16.50489 -16.39828 -15.96000 -15.62211 -15.36335 -15.19262 -15.05418 -14.62618 -14.39223 -14.12719 -13.96833 -13.81517 -13.65268 -13.35674 -13.23149 -12.94334 -12.83627 -12.54836 -12.51958 -12.46505 -12.42988 -12.22546 -12.03039 -11.83232 -11.69287 -11.63966 -11.27943 -11.00893 -10.96801 -10.73546 -10.54157 -10.32097 -9.80924 -9.54006 -9.18904 -8.02702 -6.04901 0.78094 0.84478 1.35043 1.36764 1.44020 2.07219 2.45954 2.50430 2.93743 3.18963 3.36547 3.60089 4.01155 4.06004 4.09624 4.22233 4.26481 4.28095 4.34423 4.36871 4.42724 4.54839 4.56715 4.59772 4.67615 4.76093 4.79453 4.81356 4.84368 4.92693 4.94460 5.00722 5.05439 5.07697 5.20777 5.24604 5.28266 5.32578 5.36694 5.39018 5.50698 5.53165 5.68166 5.78876 5.83408 5.84309 5.97111 6.19234 6.43221 6.47189 6.89989 7.02783 7.56819 7.71810 9.06996 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.003576 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.967623 B = 7829.006909 C = 8375.574501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.139 3.861 3 H 0.048 0.952 4 C -0.105 4.105 5 C -0.090 4.090 6 C -0.148 4.148 7 C -0.185 4.185 8 C -0.189 4.189 9 N -0.722 5.722 10 C 0.510 3.490 11 O -0.558 6.558 12 C -0.117 4.117 13 C 0.082 3.918 14 H 0.022 0.978 15 C -0.479 4.479 16 H 0.045 0.955 17 C 0.021 3.979 18 N -0.918 5.918 19 Si 0.933 3.067 20 H -0.274 1.274 21 H -0.292 1.292 22 H -0.273 1.273 23 C -0.046 4.046 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.147 4.147 27 C -0.129 4.129 28 C -0.145 4.145 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.024 0.976 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.409 0.591 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.252 0.748 45 H 0.116 0.884 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.131 0.869 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -15.016 12.271 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 H 0.066 0.934 4 C -0.143 4.143 5 C -0.128 4.128 6 C -0.166 4.166 7 C -0.222 4.222 8 C -0.225 4.225 9 N -0.377 5.377 10 C 0.297 3.703 11 O -0.434 6.434 12 C -0.157 4.157 13 C 0.063 3.937 14 H 0.041 0.959 15 C -0.518 4.518 16 H 0.063 0.937 17 C -0.178 4.178 18 N -0.558 5.558 19 Si 0.760 3.240 20 H -0.199 1.199 21 H -0.219 1.219 22 H -0.198 1.198 23 C -0.047 4.047 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.165 4.165 27 C -0.147 4.147 28 C -0.163 4.163 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.138 0.862 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.246 0.754 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.134 0.866 46 H 0.159 0.841 47 H 0.162 0.838 48 H 0.149 0.851 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.311 -13.997 12.154 18.584 hybrid contribution 0.546 1.291 -0.136 1.408 sum 1.858 -12.706 12.017 17.587 Atomic orbital electron populations 1.22108 0.95162 1.02693 1.01442 1.20926 0.94114 0.96423 0.85123 0.93406 1.21760 0.94800 1.01879 0.95841 1.21153 0.95878 0.99111 0.96614 1.22359 0.94849 1.02055 0.97290 1.23101 1.04910 0.97242 0.96966 1.23031 0.94067 1.02221 1.03231 1.46030 1.68574 1.14177 1.08923 1.20995 0.76831 0.87079 0.85402 1.90744 1.49459 1.17962 1.85216 1.21656 1.02187 0.98641 0.93175 1.17603 0.97129 0.91119 0.87881 0.95929 1.20946 1.06864 0.95028 1.28923 0.93726 1.25490 0.96595 1.00046 0.95642 1.70059 1.26861 1.20501 1.38330 0.85941 0.80356 0.79280 0.78374 1.19943 1.21850 1.19756 1.20583 0.93983 0.92867 0.97246 1.21044 0.95891 0.98622 0.98906 1.21381 1.00178 0.99574 0.93306 1.21268 0.94036 1.01674 0.99548 1.21285 0.97864 0.98295 0.97216 1.21110 0.99639 1.00572 0.94991 0.90359 0.90653 0.95654 0.89280 0.89072 0.92063 0.93880 0.86175 0.89803 0.87634 0.87628 0.89918 0.75418 0.88751 0.89250 0.93876 0.86587 0.84091 0.83841 0.85071 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.48 71.98 0.68 -3.17 16 2 C 0.14 3.67 2.57 44.99 0.12 3.79 16 3 H 0.05 1.64 7.58 -2.39 -0.02 1.62 16 4 C -0.11 -1.85 4.71 30.59 0.14 -1.70 16 5 C -0.09 -1.80 5.38 30.60 0.16 -1.63 16 6 C -0.15 -2.37 5.73 -10.79 -0.06 -2.43 16 7 C -0.19 -2.97 10.18 30.62 0.31 -2.66 16 8 C -0.19 -3.09 10.25 30.62 0.31 -2.78 16 9 N -0.72 -20.72 4.53 -442.55 -2.00 -22.73 16 10 C 0.51 20.77 7.54 87.66 0.66 21.43 16 11 O -0.56 -29.63 14.65 -3.02 -0.04 -29.68 16 12 C -0.12 -4.55 4.94 29.85 0.15 -4.41 16 13 C 0.08 4.09 1.68 -12.29 -0.02 4.07 16 14 H 0.02 1.34 6.95 -2.39 -0.02 1.32 16 15 C -0.48 -26.81 6.38 25.60 0.16 -26.65 16 16 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 17 C 0.02 1.22 5.45 84.65 0.46 1.68 16 18 N -0.92 -57.52 12.85 21.45 0.28 -57.24 16 19 Si 0.93 47.35 29.54 68.60 2.03 49.37 16 20 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 22 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 23 C -0.05 -2.08 4.77 -19.87 -0.09 -2.18 16 24 C -0.13 -4.96 8.86 22.27 0.20 -4.76 16 25 C -0.13 -4.12 10.05 22.27 0.22 -3.90 16 26 C -0.15 -4.60 10.05 22.27 0.22 -4.38 16 27 C -0.13 -4.56 10.05 22.27 0.22 -4.34 16 28 C -0.14 -6.30 9.67 22.27 0.22 -6.09 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.33 7.75 -2.39 -0.02 1.31 16 35 H 0.04 1.04 7.87 -2.39 -0.02 1.02 16 36 H 0.12 1.53 8.07 -2.39 -0.02 1.51 16 37 H 0.08 1.50 8.03 -2.39 -0.02 1.48 16 38 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 39 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.41 8.65 8.60 -92.71 -0.80 7.85 16 42 H 0.09 3.29 7.76 -2.39 -0.02 3.28 16 43 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 44 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 45 H 0.12 4.37 7.75 -2.91 -0.02 4.35 16 46 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 47 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 48 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 49 H 0.09 4.29 7.95 -2.91 -0.02 4.26 16 Total: -1.00 -75.04 402.56 4.44 -70.60 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.11 Total: 29.78 kcal Atomic # 6 Polarization: -44.19 SS G_CDS: 4.07 Total: -40.11 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -1.73 Total: -79.97 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.04 Total: -29.68 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Total: -75.04 4.44 -70.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356777180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.489 kcal (2) G-P(sol) polarization free energy of solvation -75.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds