Wall clock time and date at job start Tue Mar 31 2020 10:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.32450 * 2 1 4 4 C 1.47086 * 109.32656 * 119.65649 * 2 1 3 5 5 C 1.52567 * 114.32540 * 183.06602 * 4 2 1 6 6 C 1.50888 * 109.35784 * 274.98286 * 5 4 2 7 7 C 1.53950 * 110.09593 * 91.88279 * 6 5 4 8 8 N 1.47606 * 112.14085 * 319.44385 * 7 6 5 9 9 C 1.34782 * 118.64340 * 137.86919 * 8 7 6 10 10 O 1.21274 * 119.99719 * 179.97438 * 9 8 7 11 11 C 1.50699 * 119.99834 * 359.97438 * 9 8 7 12 12 C 1.52992 * 109.46785 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47513 * 306.00099 * 12 11 9 14 14 C 1.50700 * 109.47234 * 66.00267 * 12 11 9 15 15 H 1.07996 * 120.00250 * 35.43237 * 14 12 11 16 16 C 1.37874 * 120.00079 * 215.42904 * 14 12 11 17 17 N 1.31523 * 120.00014 * 175.74369 * 16 14 12 18 18 Si 1.86797 * 120.00101 * 355.74423 * 16 14 12 19 19 H 1.48498 * 109.47313 * 94.37444 * 18 16 14 20 20 H 1.48508 * 109.47329 * 214.37670 * 18 16 14 21 21 H 1.48503 * 109.47212 * 334.37315 * 18 16 14 22 22 C 1.50704 * 109.47148 * 186.00017 * 12 11 9 23 23 C 1.38227 * 120.00101 * 293.29773 * 22 12 11 24 24 C 1.38242 * 120.00005 * 179.75852 * 23 22 12 25 25 C 1.38233 * 119.99711 * 0.49355 * 24 23 22 26 26 C 1.38236 * 120.00030 * 359.78442 * 25 24 23 27 27 C 1.38235 * 120.00255 * 359.95695 * 26 25 24 28 28 C 1.44579 * 122.71469 * 318.13710 * 8 7 6 29 29 H 1.08999 * 109.47062 * 300.34381 * 1 2 3 30 30 H 1.09001 * 109.47075 * 60.34231 * 1 2 3 31 31 H 1.09004 * 109.46694 * 180.34373 * 1 2 3 32 32 H 1.09001 * 108.51204 * 61.81412 * 4 2 1 33 33 H 1.08996 * 108.39556 * 304.23050 * 4 2 1 34 34 H 1.09002 * 109.49426 * 155.01504 * 5 4 2 35 35 H 1.09007 * 109.51045 * 34.95537 * 5 4 2 36 36 H 1.09002 * 109.36390 * 331.69339 * 6 5 4 37 37 H 1.08998 * 109.36925 * 212.07745 * 6 5 4 38 38 H 1.08997 * 108.94662 * 198.75595 * 7 6 5 39 39 H 1.08997 * 108.94552 * 80.12531 * 7 6 5 40 40 H 1.08996 * 109.47225 * 60.00055 * 11 9 8 41 41 H 1.08998 * 109.46932 * 300.00324 * 11 9 8 42 42 H 0.96998 * 119.99707 * 179.97438 * 17 16 14 43 43 H 1.08001 * 120.00254 * 359.97438 * 23 22 12 44 44 H 1.07997 * 119.99795 * 180.25102 * 24 23 22 45 45 H 1.08003 * 119.99795 * 179.76667 * 25 24 23 46 46 H 1.07997 * 119.99808 * 179.97438 * 26 25 24 47 47 H 1.07996 * 119.99857 * 180.02562 * 27 26 25 48 48 H 1.08997 * 109.45229 * 210.49444 * 28 8 7 49 49 H 1.09003 * 109.44892 * 330.41421 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8908 1.0286 0.0000 4 6 2.0168 -0.6868 1.2062 5 6 3.5348 -0.6883 1.3590 6 6 4.1147 -1.8437 0.5810 7 6 4.4800 -1.3912 -0.8445 8 7 3.4625 -0.4900 -1.4200 9 6 3.8739 0.5909 -2.1120 10 8 3.0589 1.3475 -2.5957 11 6 5.3468 0.8593 -2.2845 12 6 5.5397 2.1380 -3.1021 13 1 4.9859 2.0582 -4.0375 14 6 5.0306 3.3186 -2.3159 15 1 5.1466 3.3432 -1.2425 16 6 4.4166 4.3673 -2.9671 17 7 3.8978 5.3580 -2.2748 18 14 4.3215 4.3813 -4.8326 19 1 3.0258 3.8002 -5.2667 20 1 4.4263 5.7791 -5.3232 21 1 5.4371 3.5759 -5.3912 22 6 7.0048 2.3273 -3.4003 23 6 7.8907 2.5922 -2.3728 24 6 9.2353 2.7609 -2.6458 25 6 9.6924 2.6747 -3.9475 26 6 8.8056 2.4155 -4.9757 27 6 7.4618 2.2415 -4.7021 28 6 2.0426 -0.7159 -1.2673 29 1 -0.3633 0.5192 0.8869 30 1 -0.3633 0.5085 -0.8930 31 1 -0.3633 -1.0277 0.0062 32 1 1.6707 -1.7200 1.1796 33 1 1.5817 -0.1995 2.0787 34 1 3.7942 -0.7926 2.4126 35 1 3.9403 0.2482 0.9757 36 1 3.3812 -2.6482 0.5280 37 1 5.0102 -2.2063 1.0857 38 1 4.5750 -2.2705 -1.4815 39 1 5.4377 -0.8715 -0.8163 40 1 5.8103 0.0213 -2.8050 41 1 5.8110 0.9807 -1.3058 42 1 3.4661 6.0960 -2.7330 43 1 7.5329 2.6639 -1.3563 44 1 9.9281 2.9638 -1.8425 45 1 10.7424 2.8103 -4.1612 46 1 9.1626 2.3487 -5.9928 47 1 6.7691 2.0386 -5.5054 48 1 1.5170 -0.3236 -2.1378 49 1 1.8525 -1.7857 -1.1807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356815844.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:03 Heat of formation + Delta-G solvation = -24.881648 kcal Electronic energy + Delta-G solvation = -27581.335000 eV Core-core repulsion = 24086.480904 eV Total energy + Delta-G solvation = -3494.854096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.02601 -38.61173 -37.32878 -34.33790 -34.11062 -32.90180 -31.62158 -30.19994 -29.17497 -28.02235 -26.79457 -24.93070 -24.25114 -22.55613 -21.85093 -21.01394 -20.21543 -19.56348 -18.07721 -16.91939 -16.73840 -16.11329 -15.79784 -15.25058 -14.69611 -14.50068 -14.23437 -14.06504 -13.85679 -13.62979 -13.23488 -13.11894 -12.73382 -12.69710 -12.48579 -12.42294 -12.19365 -11.98706 -11.79265 -11.74909 -11.41033 -11.23224 -10.96037 -10.81354 -10.70773 -10.57050 -10.48978 -10.33727 -10.32816 -10.22975 -9.83685 -9.59144 -9.10063 -8.86101 -8.39477 -8.18514 -8.12617 -7.79061 -5.95016 -3.91740 2.10863 2.15895 3.42018 3.45825 3.50374 3.52767 3.56482 4.53457 4.61210 4.67279 4.89183 4.92607 5.02817 5.13235 5.26312 5.37423 5.47221 5.53035 5.56998 5.59119 5.66337 5.69129 5.70388 5.74328 5.79712 5.91062 5.96416 5.98666 6.03215 6.06164 6.09048 6.11822 6.18585 6.25914 6.30973 6.34370 6.38692 6.48209 6.61057 6.64929 6.70917 6.84737 7.03205 7.15011 7.16103 7.29057 7.60075 7.75183 7.85362 7.92871 8.56006 9.02732 9.05535 9.70209 11.18001 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004913 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.814625 B = 5698.043013 C = 6915.898420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.129 4.129 7 C 0.110 3.890 8 N -0.622 5.622 9 C 0.511 3.489 10 O -0.497 6.497 11 C -0.115 4.115 12 C 0.057 3.943 13 H 0.048 0.952 14 C -0.486 4.486 15 H 0.069 0.931 16 C 0.087 3.913 17 N -0.898 5.898 18 Si 0.867 3.133 19 H -0.278 1.278 20 H -0.295 1.295 21 H -0.253 1.253 22 C -0.040 4.040 23 C -0.100 4.100 24 C -0.129 4.129 25 C -0.149 4.149 26 C -0.128 4.128 27 C -0.134 4.134 28 C 0.129 3.871 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.261 0.739 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.111 0.889 48 H 0.079 0.921 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 -15.585 4.045 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 H 0.098 0.902 4 C -0.144 4.144 5 C -0.156 4.156 6 C -0.168 4.168 7 C -0.013 4.013 8 N -0.358 5.358 9 C 0.299 3.701 10 O -0.369 6.369 11 C -0.156 4.156 12 C 0.037 3.963 13 H 0.067 0.933 14 C -0.523 4.523 15 H 0.088 0.912 16 C -0.116 4.116 17 N -0.536 5.536 18 Si 0.695 3.305 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.177 1.177 22 C -0.040 4.040 23 C -0.118 4.118 24 C -0.147 4.147 25 C -0.168 4.168 26 C -0.146 4.146 27 C -0.152 4.152 28 C 0.005 3.995 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.138 0.862 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.129 0.871 48 H 0.097 0.903 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.890 -14.988 3.750 15.566 hybrid contribution -0.090 0.267 -0.845 0.891 sum 1.799 -14.721 2.905 15.112 Atomic orbital electron populations 1.21755 0.94994 1.01105 1.02039 1.20695 0.95582 1.01550 0.95358 0.90195 1.20473 0.95659 1.00294 0.98001 1.21060 0.95677 0.99469 0.99388 1.21759 1.01320 0.98395 0.95294 1.21893 0.91974 0.93743 0.93711 1.47827 1.05666 1.26948 1.55381 1.20872 0.92124 0.79371 0.77685 1.90735 1.55410 1.43932 1.46783 1.21696 0.92038 0.99683 1.02156 1.18133 0.87870 0.93405 0.96863 0.93336 1.20559 1.36554 1.00887 0.94327 0.91242 1.24865 0.93767 0.95202 0.97741 1.69895 1.37732 1.10377 1.35598 0.87008 0.79361 0.76893 0.87281 1.20361 1.22175 1.17742 1.20787 0.97533 0.93514 0.92204 1.20971 0.92144 0.98997 0.99737 1.21052 0.95953 1.01484 0.96180 1.20857 0.98649 1.03922 0.93330 1.20961 0.93802 1.01614 0.98219 1.21152 0.94991 1.02236 0.96850 1.21162 0.81648 0.98729 0.97917 0.92798 0.92318 0.93162 0.92817 0.92807 0.92247 0.91022 0.91898 0.91036 0.92543 0.89815 0.91570 0.89897 0.92955 0.86248 0.87232 0.87477 0.87444 0.87081 0.90269 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.10 37.16 0.34 -1.39 16 2 C -0.11 -1.57 2.60 -92.77 -0.24 -1.81 16 3 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 4 C -0.11 -1.25 4.38 -29.79 -0.13 -1.38 16 5 C -0.12 -1.37 5.51 -28.01 -0.15 -1.52 16 6 C -0.13 -1.27 5.71 -27.30 -0.16 -1.42 16 7 C 0.11 1.27 5.95 -2.94 -0.02 1.26 16 8 N -0.62 -9.56 2.25 -172.89 -0.39 -9.94 16 9 C 0.51 10.14 7.37 -10.98 -0.08 10.06 16 10 O -0.50 -12.30 14.45 5.56 0.08 -12.22 16 11 C -0.12 -2.17 3.29 -27.89 -0.09 -2.26 16 12 C 0.06 1.29 1.17 -92.93 -0.11 1.18 16 13 H 0.05 1.19 5.06 -51.93 -0.26 0.93 16 14 C -0.49 -13.31 6.85 -34.44 -0.24 -13.55 16 15 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 16 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 17 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 18 Si 0.87 22.67 26.94 -169.99 -4.58 18.09 16 19 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 20 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 21 H -0.25 -6.09 4.53 56.52 0.26 -5.83 16 22 C -0.04 -0.83 4.57 -104.62 -0.48 -1.31 16 23 C -0.10 -1.95 8.93 -39.58 -0.35 -2.30 16 24 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 25 C -0.15 -2.42 10.05 -39.58 -0.40 -2.82 16 26 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 27 C -0.13 -2.62 8.55 -39.58 -0.34 -2.96 16 28 C 0.13 1.86 4.66 -4.38 -0.02 1.84 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.55 7.36 -51.93 -0.38 0.17 16 33 H 0.05 0.62 8.11 -51.93 -0.42 0.20 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.03 7.48 -51.93 -0.39 0.65 16 36 H 0.06 0.57 7.32 -51.93 -0.38 0.19 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.96 5.82 -51.93 -0.30 0.66 16 40 H 0.07 1.06 8.02 -51.93 -0.42 0.64 16 41 H 0.08 1.47 7.32 -51.93 -0.38 1.09 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 43 H 0.12 2.31 7.87 -52.49 -0.41 1.89 16 44 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 45 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 46 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 47 H 0.11 2.14 7.09 -52.49 -0.37 1.76 16 48 H 0.08 1.31 7.25 -51.93 -0.38 0.93 16 49 H 0.06 0.74 8.06 -51.93 -0.42 0.32 16 LS Contribution 374.89 15.07 5.65 5.65 Total: -1.00 -32.97 374.89 -10.27 -43.24 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.44 Total: 3.72 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -3.36 Total: -21.11 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.38 Total: -37.37 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.58 Total: 18.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.97 -10.27 -43.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356815844.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.356 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds