Wall clock time and date at job start Tue Mar 31 2020 10:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.32450 * 2 1 4 4 C 1.47086 * 109.32656 * 119.65649 * 2 1 3 5 5 C 1.52567 * 114.32540 * 183.06602 * 4 2 1 6 6 C 1.50888 * 109.35784 * 274.98286 * 5 4 2 7 7 C 1.53950 * 110.09593 * 91.88279 * 6 5 4 8 8 N 1.47606 * 112.14085 * 319.44385 * 7 6 5 9 9 C 1.34782 * 118.64340 * 137.86919 * 8 7 6 10 10 O 1.21274 * 119.99719 * 179.97438 * 9 8 7 11 11 C 1.50699 * 119.99834 * 359.97438 * 9 8 7 12 12 C 1.52992 * 109.46785 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47513 * 306.00099 * 12 11 9 14 14 C 1.50700 * 109.47234 * 66.00267 * 12 11 9 15 15 H 1.07996 * 120.00250 * 35.43237 * 14 12 11 16 16 C 1.37874 * 120.00079 * 215.42904 * 14 12 11 17 17 N 1.31523 * 120.00014 * 175.74369 * 16 14 12 18 18 Si 1.86797 * 120.00101 * 355.74423 * 16 14 12 19 19 H 1.48498 * 109.47313 * 94.37444 * 18 16 14 20 20 H 1.48508 * 109.47329 * 214.37670 * 18 16 14 21 21 H 1.48503 * 109.47212 * 334.37315 * 18 16 14 22 22 C 1.50704 * 109.47148 * 186.00017 * 12 11 9 23 23 C 1.38227 * 120.00101 * 293.29773 * 22 12 11 24 24 C 1.38242 * 120.00005 * 179.75852 * 23 22 12 25 25 C 1.38233 * 119.99711 * 0.49355 * 24 23 22 26 26 C 1.38236 * 120.00030 * 359.78442 * 25 24 23 27 27 C 1.38235 * 120.00255 * 359.95695 * 26 25 24 28 28 C 1.44579 * 122.71469 * 318.13710 * 8 7 6 29 29 H 1.08999 * 109.47062 * 300.34381 * 1 2 3 30 30 H 1.09001 * 109.47075 * 60.34231 * 1 2 3 31 31 H 1.09004 * 109.46694 * 180.34373 * 1 2 3 32 32 H 1.09001 * 108.51204 * 61.81412 * 4 2 1 33 33 H 1.08996 * 108.39556 * 304.23050 * 4 2 1 34 34 H 1.09002 * 109.49426 * 155.01504 * 5 4 2 35 35 H 1.09007 * 109.51045 * 34.95537 * 5 4 2 36 36 H 1.09002 * 109.36390 * 331.69339 * 6 5 4 37 37 H 1.08998 * 109.36925 * 212.07745 * 6 5 4 38 38 H 1.08997 * 108.94662 * 198.75595 * 7 6 5 39 39 H 1.08997 * 108.94552 * 80.12531 * 7 6 5 40 40 H 1.08996 * 109.47225 * 60.00055 * 11 9 8 41 41 H 1.08998 * 109.46932 * 300.00324 * 11 9 8 42 42 H 0.96998 * 119.99707 * 179.97438 * 17 16 14 43 43 H 1.08001 * 120.00254 * 359.97438 * 23 22 12 44 44 H 1.07997 * 119.99795 * 180.25102 * 24 23 22 45 45 H 1.08003 * 119.99795 * 179.76667 * 25 24 23 46 46 H 1.07997 * 119.99808 * 179.97438 * 26 25 24 47 47 H 1.07996 * 119.99857 * 180.02562 * 27 26 25 48 48 H 1.08997 * 109.45229 * 210.49444 * 28 8 7 49 49 H 1.09003 * 109.44892 * 330.41421 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8908 1.0286 0.0000 4 6 2.0168 -0.6868 1.2062 5 6 3.5348 -0.6883 1.3590 6 6 4.1147 -1.8437 0.5810 7 6 4.4800 -1.3912 -0.8445 8 7 3.4625 -0.4900 -1.4200 9 6 3.8739 0.5909 -2.1120 10 8 3.0589 1.3475 -2.5957 11 6 5.3468 0.8593 -2.2845 12 6 5.5397 2.1380 -3.1021 13 1 4.9859 2.0582 -4.0375 14 6 5.0306 3.3186 -2.3159 15 1 5.1466 3.3432 -1.2425 16 6 4.4166 4.3673 -2.9671 17 7 3.8978 5.3580 -2.2748 18 14 4.3215 4.3813 -4.8326 19 1 3.0258 3.8002 -5.2667 20 1 4.4263 5.7791 -5.3232 21 1 5.4371 3.5759 -5.3912 22 6 7.0048 2.3273 -3.4003 23 6 7.8907 2.5922 -2.3728 24 6 9.2353 2.7609 -2.6458 25 6 9.6924 2.6747 -3.9475 26 6 8.8056 2.4155 -4.9757 27 6 7.4618 2.2415 -4.7021 28 6 2.0426 -0.7159 -1.2673 29 1 -0.3633 0.5192 0.8869 30 1 -0.3633 0.5085 -0.8930 31 1 -0.3633 -1.0277 0.0062 32 1 1.6707 -1.7200 1.1796 33 1 1.5817 -0.1995 2.0787 34 1 3.7942 -0.7926 2.4126 35 1 3.9403 0.2482 0.9757 36 1 3.3812 -2.6482 0.5280 37 1 5.0102 -2.2063 1.0857 38 1 4.5750 -2.2705 -1.4815 39 1 5.4377 -0.8715 -0.8163 40 1 5.8103 0.0213 -2.8050 41 1 5.8110 0.9807 -1.3058 42 1 3.4661 6.0960 -2.7330 43 1 7.5329 2.6639 -1.3563 44 1 9.9281 2.9638 -1.8425 45 1 10.7424 2.8103 -4.1612 46 1 9.1626 2.3487 -5.9928 47 1 6.7691 2.0386 -5.5054 48 1 1.5170 -0.3236 -2.1378 49 1 1.8525 -1.7857 -1.1807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356815844.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:02 Heat of formation + Delta-G solvation = -43.185752 kcal Electronic energy + Delta-G solvation = -27582.128725 eV Core-core repulsion = 24086.480904 eV Total energy + Delta-G solvation = -3495.647822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37631 -40.03875 -38.68463 -35.90204 -35.49201 -34.03122 -33.68835 -31.60299 -30.61779 -29.02728 -28.45034 -26.50033 -25.29105 -24.17917 -23.27879 -22.18661 -21.34998 -21.01684 -19.45680 -19.00918 -18.17779 -17.36639 -17.17978 -16.56998 -16.43292 -15.78604 -15.49328 -15.41819 -15.37690 -14.99149 -14.68308 -14.41983 -14.27778 -14.13181 -13.90830 -13.64309 -13.57347 -13.45095 -13.14297 -12.98124 -12.80114 -12.69764 -12.56800 -12.19914 -12.01088 -11.90737 -11.85600 -11.78921 -11.53570 -11.48518 -11.32616 -11.24693 -11.02811 -10.70081 -10.41485 -9.60400 -9.42579 -9.28989 -8.22704 -6.18925 0.68893 0.73896 1.30258 1.34555 1.41175 1.91785 2.26720 2.40727 3.09088 3.22880 3.66155 3.81574 3.88319 4.07782 4.11247 4.14023 4.17710 4.30306 4.31849 4.39510 4.44324 4.48207 4.54207 4.62447 4.63561 4.71898 4.76212 4.77451 4.85706 4.86456 4.89575 4.98796 5.07538 5.10576 5.19200 5.21977 5.22866 5.32746 5.38255 5.38685 5.41657 5.46641 5.52294 5.68377 5.77696 5.83535 5.93881 6.03441 6.32921 6.36691 6.56550 6.79670 7.44813 7.54089 8.94548 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004913 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.814625 B = 5698.043013 C = 6915.898420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.020 0.980 4 C -0.106 4.106 5 C -0.120 4.120 6 C -0.121 4.121 7 C 0.099 3.901 8 N -0.611 5.611 9 C 0.503 3.497 10 O -0.563 6.563 11 C -0.108 4.108 12 C 0.059 3.941 13 H 0.030 0.970 14 C -0.461 4.461 15 H 0.030 0.970 16 C 0.022 3.978 17 N -0.954 5.954 18 Si 0.918 3.082 19 H -0.293 1.293 20 H -0.296 1.296 21 H -0.219 1.219 22 C -0.063 4.063 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.139 4.139 26 C -0.124 4.124 27 C -0.150 4.150 28 C 0.127 3.873 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.257 0.743 43 H 0.106 0.894 44 H 0.139 0.861 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.109 0.891 48 H 0.049 0.951 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 -19.298 3.696 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.039 0.961 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.159 4.159 7 C -0.023 4.023 8 N -0.345 5.345 9 C 0.292 3.708 10 O -0.440 6.440 11 C -0.147 4.147 12 C 0.039 3.961 13 H 0.048 0.952 14 C -0.499 4.499 15 H 0.048 0.952 16 C -0.174 4.174 17 N -0.596 5.596 18 Si 0.744 3.256 19 H -0.220 1.220 20 H -0.223 1.223 21 H -0.142 1.142 22 C -0.064 4.064 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.157 4.157 26 C -0.142 4.142 27 C -0.169 4.169 28 C 0.004 3.996 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.124 0.876 44 H 0.156 0.844 45 H 0.165 0.835 46 H 0.158 0.842 47 H 0.127 0.873 48 H 0.068 0.932 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.774 -18.779 3.424 19.676 hybrid contribution -0.873 1.311 -0.622 1.694 sum 3.900 -17.468 2.802 18.116 Atomic orbital electron populations 1.21733 0.93573 1.02895 1.01304 1.20627 0.96860 0.98467 0.96733 0.96085 1.20463 0.95905 1.01558 0.96366 1.21077 0.95496 0.98501 1.00676 1.21752 1.02965 0.97754 0.93422 1.22269 0.90666 0.93768 0.95551 1.47855 1.07006 1.25890 1.53769 1.21158 0.92147 0.79855 0.77663 1.90709 1.56779 1.46546 1.49934 1.21591 0.91872 0.99043 1.02242 1.17997 0.89368 0.93061 0.95661 0.95199 1.20757 1.34524 1.01757 0.92826 0.95211 1.25626 0.94508 0.95423 1.01863 1.70047 1.40716 1.11720 1.37116 0.86198 0.79590 0.76920 0.82874 1.22032 1.22344 1.14152 1.20476 0.96061 0.96212 0.93606 1.20983 0.93555 1.00221 0.98867 1.21384 0.95027 1.00028 0.97854 1.21336 1.00517 1.01416 0.92410 1.21333 0.92607 1.00011 1.00259 1.21250 0.96582 1.03118 0.95901 1.21278 0.80784 1.00791 0.96790 0.92383 0.94296 0.89976 0.89718 0.92813 0.90538 0.95106 0.89780 0.88463 0.89633 0.89952 0.88028 0.89209 0.93462 0.87599 0.84356 0.83539 0.84191 0.87253 0.93247 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.10 71.98 0.65 -2.74 16 2 C -0.11 -3.11 2.60 -12.19 -0.03 -3.14 16 3 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -2.33 4.38 28.61 0.13 -2.20 16 5 C -0.12 -2.61 5.51 29.76 0.16 -2.45 16 6 C -0.12 -1.93 5.71 30.23 0.17 -1.75 16 7 C 0.10 2.04 5.95 86.49 0.51 2.55 16 8 N -0.61 -18.80 2.25 -819.29 -1.84 -20.64 16 9 C 0.50 20.90 7.37 87.66 0.65 21.55 16 10 O -0.56 -30.05 14.45 -3.01 -0.04 -30.10 16 11 C -0.11 -4.11 3.29 29.85 0.10 -4.02 16 12 C 0.06 2.75 1.17 -12.29 -0.01 2.73 16 13 H 0.03 1.51 5.06 -2.39 -0.01 1.49 16 14 C -0.46 -26.87 6.85 25.60 0.18 -26.69 16 15 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 16 C 0.02 1.36 5.47 84.65 0.46 1.82 16 17 N -0.95 -64.22 13.96 21.45 0.30 -63.92 16 18 Si 0.92 49.04 26.94 68.60 1.85 50.89 16 19 H -0.29 -16.27 7.11 99.48 0.71 -15.57 16 20 H -0.30 -15.71 7.11 99.48 0.71 -15.01 16 21 H -0.22 -10.34 4.53 99.48 0.45 -9.89 16 22 C -0.06 -2.60 4.57 -19.87 -0.09 -2.69 16 23 C -0.12 -4.50 8.93 22.27 0.20 -4.30 16 24 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 25 C -0.14 -3.85 10.05 22.27 0.22 -3.62 16 26 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 27 C -0.15 -5.57 8.55 22.27 0.19 -5.38 16 28 C 0.13 3.65 4.66 87.18 0.41 4.06 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.08 1.40 7.36 -2.39 -0.02 1.38 16 33 H 0.05 1.18 8.11 -2.39 -0.02 1.17 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.03 0.92 7.48 -2.38 -0.02 0.90 16 36 H 0.08 1.05 7.32 -2.39 -0.02 1.04 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.73 5.82 -2.39 -0.01 1.72 16 40 H 0.10 3.13 8.02 -2.39 -0.02 3.11 16 41 H 0.09 3.28 7.32 -2.39 -0.02 3.26 16 42 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 43 H 0.11 4.21 7.87 -2.91 -0.02 4.19 16 44 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 45 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 46 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 47 H 0.11 4.01 7.09 -2.91 -0.02 3.99 16 48 H 0.05 1.72 7.25 -2.39 -0.02 1.71 16 49 H 0.10 2.14 8.06 -2.39 -0.02 2.12 16 Total: -1.00 -81.04 374.89 5.25 -75.79 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.65 Total: 21.40 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 4.34 Total: -33.42 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -1.55 Total: -84.56 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.04 Total: -30.10 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.85 Total: 50.89 kcal Total: -81.04 5.25 -75.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356815844.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.600 kcal (2) G-P(sol) polarization free energy of solvation -81.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds