Wall clock time and date at job start Tue Mar 31 2020 10:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.18010 * 2 1 4 4 C 1.47041 * 109.28568 * 119.59243 * 2 1 3 5 5 C 1.52561 * 114.29342 * 183.11947 * 4 2 1 6 6 C 1.50886 * 109.34715 * 274.93804 * 5 4 2 7 7 C 1.53945 * 110.09233 * 91.89166 * 6 5 4 8 8 N 1.47610 * 112.14403 * 319.43086 * 7 6 5 9 9 C 1.34776 * 118.64101 * 137.86331 * 8 7 6 10 10 O 1.21275 * 120.00145 * 180.02562 * 9 8 7 11 11 C 1.50704 * 119.99980 * 0.02844 * 9 8 7 12 12 C 1.52998 * 109.47177 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.46930 * 55.00444 * 12 11 9 14 14 C 1.50690 * 109.47386 * 295.00273 * 12 11 9 15 15 H 1.08003 * 120.00031 * 121.36112 * 14 12 11 16 16 C 1.37875 * 119.99996 * 301.36188 * 14 12 11 17 17 N 1.31514 * 120.00176 * 6.19091 * 16 14 12 18 18 Si 1.86797 * 119.99930 * 186.18711 * 16 14 12 19 19 H 1.48496 * 109.47515 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47252 * 120.00374 * 18 16 14 21 21 H 1.48504 * 109.47480 * 240.00227 * 18 16 14 22 22 C 1.50696 * 109.46845 * 174.99735 * 12 11 9 23 23 C 1.38237 * 120.00059 * 211.36891 * 22 12 11 24 24 C 1.38243 * 120.00132 * 179.76751 * 23 22 12 25 25 C 1.38234 * 119.99711 * 0.49162 * 24 23 22 26 26 C 1.38235 * 120.00093 * 359.78765 * 25 24 23 27 27 C 1.38228 * 120.00168 * 31.65217 * 22 12 11 28 28 C 1.44579 * 122.71794 * 317.89510 * 8 7 6 29 29 H 1.09005 * 109.46700 * 179.56476 * 1 2 3 30 30 H 1.08999 * 109.47299 * 299.56698 * 1 2 3 31 31 H 1.09007 * 109.47000 * 59.57184 * 1 2 3 32 32 H 1.09002 * 108.55777 * 61.85071 * 4 2 1 33 33 H 1.09003 * 108.38506 * 304.25361 * 4 2 1 34 34 H 1.08997 * 109.49256 * 154.97768 * 5 4 2 35 35 H 1.09005 * 109.51356 * 34.91208 * 5 4 2 36 36 H 1.08994 * 109.36982 * 331.69277 * 6 5 4 37 37 H 1.09002 * 109.36506 * 212.07927 * 6 5 4 38 38 H 1.09001 * 108.94496 * 198.75478 * 7 6 5 39 39 H 1.08995 * 108.94782 * 80.12084 * 7 6 5 40 40 H 1.08998 * 109.47270 * 299.99661 * 11 9 8 41 41 H 1.09000 * 109.47000 * 59.99445 * 11 9 8 42 42 H 0.96999 * 120.00185 * 179.97438 * 17 16 14 43 43 H 1.08001 * 120.00055 * 0.02562 * 23 22 12 44 44 H 1.07995 * 119.99785 * 180.25805 * 24 23 22 45 45 H 1.07998 * 119.99899 * 179.75963 * 25 24 23 46 46 H 1.08000 * 119.99908 * 179.97438 * 26 25 24 47 47 H 1.08004 * 120.00405 * 359.97438 * 27 22 12 48 48 H 1.08999 * 109.44933 * 210.72938 * 28 8 7 49 49 H 1.08999 * 109.45158 * 330.67667 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8881 1.0295 0.0000 4 6 2.0157 -0.6854 1.2069 5 6 3.5335 -0.6857 1.3606 6 6 4.1143 -1.8421 0.5847 7 6 4.4802 -1.3916 -0.8412 8 7 3.4625 -0.4919 -1.4188 9 6 3.8738 0.5883 -2.1121 10 8 3.0588 1.3442 -2.5968 11 6 5.3467 0.8566 -2.2849 12 6 5.5396 2.1337 -3.1052 13 1 5.0009 2.9545 -2.6316 14 6 5.0069 1.9210 -4.4986 15 1 4.2239 2.5593 -4.8808 16 6 5.5190 0.9114 -5.2858 17 7 6.3836 0.0585 -4.7812 18 14 4.9846 0.7551 -7.0688 19 1 4.0118 1.8300 -7.3902 20 1 6.1705 0.8806 -7.9539 21 1 4.3471 -0.5694 -7.2803 22 6 7.0070 2.4695 -3.1741 23 6 7.4112 3.7892 -3.2517 24 6 8.7575 4.0975 -3.3101 25 6 9.6993 3.0857 -3.3010 26 6 9.2949 1.7657 -3.2292 27 6 7.9488 1.4577 -3.1655 28 6 2.0426 -0.7211 -1.2711 29 1 -0.3633 -1.0277 -0.0078 30 1 -0.3634 0.5071 0.8938 31 1 -0.3633 0.5205 -0.8862 32 1 1.6701 -1.7189 1.1817 33 1 1.5797 -0.1971 2.0785 34 1 3.7923 -0.7883 2.4144 35 1 3.9386 0.2504 0.9761 36 1 3.3813 -2.6470 0.5326 37 1 5.0097 -2.2034 1.0905 38 1 4.5759 -2.2719 -1.4768 39 1 5.4376 -0.8713 -0.8133 40 1 5.8109 0.9794 -1.3064 41 1 5.8103 0.0180 -2.8044 42 1 6.7436 -0.6519 -5.3349 43 1 6.6752 4.5796 -3.2626 44 1 9.0733 5.1287 -3.3666 45 1 10.7509 3.3263 -3.3505 46 1 10.0307 0.9752 -3.2225 47 1 7.6330 0.4264 -3.1090 48 1 1.5195 -0.3324 -2.1448 49 1 1.8550 -1.7911 -1.1819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356815848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:09 Heat of formation + Delta-G solvation = -20.923999 kcal Electronic energy + Delta-G solvation = -27767.386344 eV Core-core repulsion = 24272.703864 eV Total energy + Delta-G solvation = -3494.682480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.85419 -38.30512 -37.15417 -34.28776 -34.15231 -32.81929 -31.04852 -29.81667 -28.67344 -27.96443 -26.63697 -24.91192 -24.18451 -22.48640 -21.44851 -20.84155 -20.18716 -19.62689 -17.97027 -16.68853 -16.09946 -15.90282 -15.46500 -15.12485 -14.86813 -14.48167 -14.04117 -13.82194 -13.70779 -13.50418 -13.16713 -12.97465 -12.65601 -12.60628 -12.28161 -12.20541 -11.77128 -11.65799 -11.62335 -11.38577 -11.30536 -10.97650 -10.91264 -10.78041 -10.72872 -10.51678 -10.38626 -10.34473 -10.21352 -10.16849 -9.92479 -9.27821 -9.15908 -8.60285 -8.39228 -7.95109 -7.79534 -7.43082 -5.97804 -4.04876 2.49128 2.57983 3.30886 3.38753 3.45469 3.70189 3.75593 4.45034 4.70862 4.89043 4.97545 4.98808 5.10158 5.20203 5.26362 5.45666 5.51398 5.65023 5.70574 5.77736 5.80613 5.81200 5.86228 5.92205 5.96940 6.01960 6.08676 6.13315 6.16233 6.18693 6.29621 6.35854 6.41716 6.45719 6.50310 6.55685 6.65347 6.74223 6.78995 7.14991 7.17149 7.28149 7.35645 7.50554 7.56324 7.71181 7.98435 8.08136 8.20066 8.20970 8.38398 8.92664 9.27834 9.58354 10.97055 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.004786 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.132835 B = 5849.278842 C = 6847.917231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.072 0.928 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.131 4.131 7 C 0.112 3.888 8 N -0.622 5.622 9 C 0.523 3.477 10 O -0.527 6.527 11 C -0.139 4.139 12 C 0.087 3.913 13 H 0.035 0.965 14 C -0.467 4.467 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.287 1.287 22 C -0.030 4.030 23 C -0.132 4.132 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.144 4.144 27 C -0.075 4.075 28 C 0.128 3.872 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.137 0.863 42 H 0.260 0.740 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.148 0.852 48 H 0.079 0.921 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 -4.573 11.571 12.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.091 0.909 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.169 4.169 7 C -0.011 4.011 8 N -0.357 5.357 9 C 0.314 3.686 10 O -0.401 6.401 11 C -0.179 4.179 12 C 0.068 3.932 13 H 0.053 0.947 14 C -0.504 4.504 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.213 1.213 22 C -0.031 4.031 23 C -0.150 4.150 24 C -0.161 4.161 25 C -0.172 4.172 26 C -0.163 4.163 27 C -0.094 4.094 28 C 0.004 3.996 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.154 0.846 42 H 0.070 0.930 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.166 0.834 48 H 0.097 0.903 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.689 -4.325 11.209 12.311 hybrid contribution -0.099 -0.254 -1.176 1.208 sum -2.789 -4.579 10.032 11.375 Atomic orbital electron populations 1.21773 0.95119 1.01361 1.01743 1.20766 0.95436 1.00940 0.95710 0.90927 1.20480 0.95759 1.00536 0.97752 1.21039 0.95521 0.99486 0.99272 1.21775 1.01261 0.98218 0.95631 1.21860 0.92042 0.94147 0.93074 1.47800 1.05274 1.27349 1.55267 1.21186 0.92695 0.79090 0.75672 1.90591 1.56114 1.46476 1.46965 1.22040 0.90729 1.06205 0.98889 1.17654 0.87902 0.92187 0.95498 0.94658 1.21040 1.17693 1.14150 0.97532 0.92171 1.24857 0.95028 0.95654 0.98398 1.69539 1.31422 1.16712 1.35395 0.86526 0.78318 0.77821 0.85376 1.19850 1.21141 1.21310 1.20372 0.97385 0.91857 0.93493 1.20931 0.94877 0.96632 1.02548 1.20801 0.93606 0.97780 1.03897 1.20780 0.97865 0.93597 1.04953 1.21087 0.96643 0.95354 1.03180 1.21617 0.90901 1.01280 0.95594 1.21249 0.82285 0.98704 0.97396 0.93007 0.92970 0.92358 0.92650 0.92986 0.92358 0.91381 0.91997 0.91050 0.92447 0.89529 0.93363 0.84571 0.92977 0.87667 0.88094 0.88311 0.88077 0.83440 0.90284 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.10 37.16 0.34 -1.28 16 2 C -0.11 -1.45 2.60 -92.49 -0.24 -1.69 16 3 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.11 -1.21 4.38 -29.81 -0.13 -1.34 16 5 C -0.12 -1.31 5.51 -28.02 -0.15 -1.47 16 6 C -0.13 -1.42 5.71 -27.30 -0.16 -1.57 16 7 C 0.11 1.56 5.95 -2.94 -0.02 1.54 16 8 N -0.62 -10.59 2.24 -172.53 -0.39 -10.98 16 9 C 0.52 11.19 7.36 -10.98 -0.08 11.11 16 10 O -0.53 -13.12 14.42 5.56 0.08 -13.04 16 11 C -0.14 -2.98 2.55 -27.88 -0.07 -3.05 16 12 C 0.09 2.10 1.98 -92.93 -0.18 1.91 16 13 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 14 C -0.47 -12.58 7.27 -34.45 -0.25 -12.83 16 15 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 16 C 0.06 1.57 5.14 -17.82 -0.09 1.48 16 17 N -0.89 -22.54 7.74 55.43 0.43 -22.11 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 C -0.03 -0.70 4.68 -104.63 -0.49 -1.19 16 23 C -0.13 -2.82 9.70 -39.58 -0.38 -3.20 16 24 C -0.14 -2.75 10.05 -39.58 -0.40 -3.14 16 25 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 26 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 27 C -0.08 -1.65 7.56 -39.58 -0.30 -1.95 16 28 C 0.13 1.96 4.70 -4.08 -0.02 1.94 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 33 H 0.05 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.92 7.48 -51.93 -0.39 0.53 16 36 H 0.06 0.63 7.32 -51.93 -0.38 0.25 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.24 5.82 -51.93 -0.30 0.93 16 40 H 0.05 0.93 7.41 -51.93 -0.38 0.55 16 41 H 0.14 3.10 4.53 -51.93 -0.24 2.86 16 42 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 43 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 44 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 45 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 46 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 47 H 0.15 3.32 4.97 -52.48 -0.26 3.06 16 48 H 0.08 1.40 7.27 -51.93 -0.38 1.02 16 49 H 0.06 0.82 8.07 -51.93 -0.42 0.40 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -28.54 371.14 -10.89 -39.42 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.16 Total: 5.82 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -3.42 Total: -21.28 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.04 Total: -33.09 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.54 -10.89 -39.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356815848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.501 kcal (2) G-P(sol) polarization free energy of solvation -28.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds