Wall clock time and date at job start Tue Mar 31 2020 10:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.18010 * 2 1 4 4 C 1.47041 * 109.28568 * 119.59243 * 2 1 3 5 5 C 1.52561 * 114.29342 * 183.11947 * 4 2 1 6 6 C 1.50886 * 109.34715 * 274.93804 * 5 4 2 7 7 C 1.53945 * 110.09233 * 91.89166 * 6 5 4 8 8 N 1.47610 * 112.14403 * 319.43086 * 7 6 5 9 9 C 1.34776 * 118.64101 * 137.86331 * 8 7 6 10 10 O 1.21275 * 120.00145 * 180.02562 * 9 8 7 11 11 C 1.50704 * 119.99980 * 0.02844 * 9 8 7 12 12 C 1.52998 * 109.47177 * 179.97438 * 11 9 8 13 13 H 1.09007 * 109.46930 * 55.00444 * 12 11 9 14 14 C 1.50690 * 109.47386 * 295.00273 * 12 11 9 15 15 H 1.08003 * 120.00031 * 121.36112 * 14 12 11 16 16 C 1.37875 * 119.99996 * 301.36188 * 14 12 11 17 17 N 1.31514 * 120.00176 * 6.19091 * 16 14 12 18 18 Si 1.86797 * 119.99930 * 186.18711 * 16 14 12 19 19 H 1.48496 * 109.47515 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47252 * 120.00374 * 18 16 14 21 21 H 1.48504 * 109.47480 * 240.00227 * 18 16 14 22 22 C 1.50696 * 109.46845 * 174.99735 * 12 11 9 23 23 C 1.38237 * 120.00059 * 211.36891 * 22 12 11 24 24 C 1.38243 * 120.00132 * 179.76751 * 23 22 12 25 25 C 1.38234 * 119.99711 * 0.49162 * 24 23 22 26 26 C 1.38235 * 120.00093 * 359.78765 * 25 24 23 27 27 C 1.38228 * 120.00168 * 31.65217 * 22 12 11 28 28 C 1.44579 * 122.71794 * 317.89510 * 8 7 6 29 29 H 1.09005 * 109.46700 * 179.56476 * 1 2 3 30 30 H 1.08999 * 109.47299 * 299.56698 * 1 2 3 31 31 H 1.09007 * 109.47000 * 59.57184 * 1 2 3 32 32 H 1.09002 * 108.55777 * 61.85071 * 4 2 1 33 33 H 1.09003 * 108.38506 * 304.25361 * 4 2 1 34 34 H 1.08997 * 109.49256 * 154.97768 * 5 4 2 35 35 H 1.09005 * 109.51356 * 34.91208 * 5 4 2 36 36 H 1.08994 * 109.36982 * 331.69277 * 6 5 4 37 37 H 1.09002 * 109.36506 * 212.07927 * 6 5 4 38 38 H 1.09001 * 108.94496 * 198.75478 * 7 6 5 39 39 H 1.08995 * 108.94782 * 80.12084 * 7 6 5 40 40 H 1.08998 * 109.47270 * 299.99661 * 11 9 8 41 41 H 1.09000 * 109.47000 * 59.99445 * 11 9 8 42 42 H 0.96999 * 120.00185 * 179.97438 * 17 16 14 43 43 H 1.08001 * 120.00055 * 0.02562 * 23 22 12 44 44 H 1.07995 * 119.99785 * 180.25805 * 24 23 22 45 45 H 1.07998 * 119.99899 * 179.75963 * 25 24 23 46 46 H 1.08000 * 119.99908 * 179.97438 * 26 25 24 47 47 H 1.08004 * 120.00405 * 359.97438 * 27 22 12 48 48 H 1.08999 * 109.44933 * 210.72938 * 28 8 7 49 49 H 1.08999 * 109.45158 * 330.67667 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8881 1.0295 0.0000 4 6 2.0157 -0.6854 1.2069 5 6 3.5335 -0.6857 1.3606 6 6 4.1143 -1.8421 0.5847 7 6 4.4802 -1.3916 -0.8412 8 7 3.4625 -0.4919 -1.4188 9 6 3.8738 0.5883 -2.1121 10 8 3.0588 1.3442 -2.5968 11 6 5.3467 0.8566 -2.2849 12 6 5.5396 2.1337 -3.1052 13 1 5.0009 2.9545 -2.6316 14 6 5.0069 1.9210 -4.4986 15 1 4.2239 2.5593 -4.8808 16 6 5.5190 0.9114 -5.2858 17 7 6.3836 0.0585 -4.7812 18 14 4.9846 0.7551 -7.0688 19 1 4.0118 1.8300 -7.3902 20 1 6.1705 0.8806 -7.9539 21 1 4.3471 -0.5694 -7.2803 22 6 7.0070 2.4695 -3.1741 23 6 7.4112 3.7892 -3.2517 24 6 8.7575 4.0975 -3.3101 25 6 9.6993 3.0857 -3.3010 26 6 9.2949 1.7657 -3.2292 27 6 7.9488 1.4577 -3.1655 28 6 2.0426 -0.7211 -1.2711 29 1 -0.3633 -1.0277 -0.0078 30 1 -0.3634 0.5071 0.8938 31 1 -0.3633 0.5205 -0.8862 32 1 1.6701 -1.7189 1.1817 33 1 1.5797 -0.1971 2.0785 34 1 3.7923 -0.7883 2.4144 35 1 3.9386 0.2504 0.9761 36 1 3.3813 -2.6470 0.5326 37 1 5.0097 -2.2034 1.0905 38 1 4.5759 -2.2719 -1.4768 39 1 5.4376 -0.8713 -0.8133 40 1 5.8109 0.9794 -1.3064 41 1 5.8103 0.0180 -2.8044 42 1 6.7436 -0.6519 -5.3349 43 1 6.6752 4.5796 -3.2626 44 1 9.0733 5.1287 -3.3666 45 1 10.7509 3.3263 -3.3505 46 1 10.0307 0.9752 -3.2225 47 1 7.6330 0.4264 -3.1090 48 1 1.5195 -0.3324 -2.1448 49 1 1.8550 -1.7911 -1.1819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356815848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:08 Heat of formation + Delta-G solvation = -32.960112 kcal Electronic energy + Delta-G solvation = -27767.908269 eV Core-core repulsion = 24272.703864 eV Total energy + Delta-G solvation = -3495.204405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28179 -39.88343 -38.57711 -36.06794 -35.41552 -33.98960 -32.94910 -31.42083 -30.27538 -28.99335 -28.32441 -26.48658 -25.25120 -24.19751 -23.01962 -22.10736 -21.40196 -21.05204 -19.48052 -18.32056 -17.92794 -17.19988 -17.04573 -16.84067 -16.33212 -15.67750 -15.46255 -15.40733 -15.12564 -14.87572 -14.61965 -14.28435 -14.20286 -13.81015 -13.64399 -13.58227 -13.30578 -13.16506 -13.02157 -12.81776 -12.78910 -12.73972 -12.56785 -12.18666 -12.12581 -11.90138 -11.83977 -11.73636 -11.49970 -11.31800 -11.22986 -11.07086 -11.02854 -10.48455 -10.23498 -9.41279 -9.36414 -9.11868 -7.97038 -6.10320 0.86838 0.98384 1.33765 1.37370 1.47328 2.06908 2.33642 2.44182 3.18592 3.35490 3.70369 3.86662 3.93976 4.09617 4.17090 4.23154 4.33622 4.40517 4.43912 4.51211 4.57299 4.64216 4.69491 4.73716 4.78533 4.81030 4.82473 4.91147 4.96331 5.04276 5.07542 5.11447 5.13836 5.19016 5.24865 5.33566 5.37893 5.42636 5.48987 5.52407 5.53814 5.64016 5.68011 5.91694 5.94372 6.00516 6.10210 6.37561 6.41734 6.57062 6.65346 6.84067 7.51391 7.63973 8.93293 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013111 B = 0.004786 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.132835 B = 5849.278842 C = 6847.917231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 H 0.034 0.966 4 C -0.107 4.107 5 C -0.116 4.116 6 C -0.120 4.120 7 C 0.103 3.897 8 N -0.613 5.613 9 C 0.515 3.485 10 O -0.576 6.576 11 C -0.124 4.124 12 C 0.088 3.912 13 H 0.007 0.993 14 C -0.490 4.490 15 H 0.025 0.975 16 C 0.035 3.965 17 N -0.883 5.883 18 Si 0.930 3.070 19 H -0.288 1.288 20 H -0.277 1.277 21 H -0.281 1.281 22 C -0.054 4.054 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.088 4.088 28 C 0.123 3.877 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.129 0.871 42 H 0.263 0.737 43 H 0.101 0.899 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.128 0.872 47 H 0.138 0.862 48 H 0.046 0.954 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.632 -6.454 13.146 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.053 0.947 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.158 4.158 7 C -0.019 4.019 8 N -0.346 5.346 9 C 0.305 3.695 10 O -0.455 6.455 11 C -0.163 4.163 12 C 0.068 3.932 13 H 0.026 0.974 14 C -0.528 4.528 15 H 0.043 0.957 16 C -0.164 4.164 17 N -0.523 5.523 18 Si 0.758 3.242 19 H -0.214 1.214 20 H -0.203 1.203 21 H -0.207 1.207 22 C -0.055 4.055 23 C -0.170 4.170 24 C -0.158 4.158 25 C -0.165 4.165 26 C -0.165 4.165 27 C -0.106 4.106 28 C 0.000 4.000 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.146 0.854 42 H 0.073 0.927 43 H 0.120 0.880 44 H 0.151 0.849 45 H 0.155 0.845 46 H 0.146 0.854 47 H 0.155 0.845 48 H 0.064 0.936 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.976 -6.253 12.822 14.299 hybrid contribution -0.588 0.360 -1.636 1.776 sum -1.564 -5.893 11.185 12.739 Atomic orbital electron populations 1.21746 0.93468 1.02700 1.01656 1.20680 0.96815 0.98755 0.95795 0.94698 1.20464 0.95787 1.01481 0.96666 1.21062 0.95515 0.98246 1.00589 1.21750 1.02837 0.98228 0.93012 1.22133 0.90899 0.93425 0.95394 1.47807 1.06796 1.26180 1.53845 1.21254 0.92376 0.79926 0.75927 1.90563 1.56983 1.48542 1.49386 1.21812 0.91096 1.04378 0.99061 1.17541 0.88908 0.92436 0.94269 0.97417 1.20944 1.17865 1.14648 0.99336 0.95704 1.25205 0.95375 0.95526 1.00310 1.69622 1.30819 1.16233 1.35583 0.85937 0.77896 0.77340 0.83019 1.21356 1.20310 1.20720 1.20313 0.96559 0.93077 0.95548 1.21100 0.96386 0.96081 1.03480 1.21159 0.92479 0.99803 1.02321 1.21220 0.99710 0.92804 1.02780 1.21404 0.96050 0.96918 1.02114 1.21543 0.91967 1.00430 0.96686 1.21413 0.80887 1.00446 0.97269 0.90851 0.91520 0.94081 0.90511 0.91764 0.90061 0.94381 0.90292 0.88647 0.91806 0.90270 0.91723 0.85370 0.92715 0.88041 0.84946 0.84491 0.85438 0.84460 0.93571 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.10 71.98 0.66 -2.38 16 2 C -0.10 -2.68 2.60 -12.01 -0.03 -2.71 16 3 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.11 -2.15 4.38 28.60 0.13 -2.03 16 5 C -0.12 -2.40 5.51 29.76 0.16 -2.24 16 6 C -0.12 -2.25 5.71 30.23 0.17 -2.08 16 7 C 0.10 2.78 5.95 86.49 0.51 3.29 16 8 N -0.61 -21.41 2.24 -818.17 -1.83 -23.24 16 9 C 0.51 23.39 7.36 87.66 0.65 24.03 16 10 O -0.58 -31.13 14.42 -3.01 -0.04 -31.17 16 11 C -0.12 -5.58 2.55 29.85 0.08 -5.50 16 12 C 0.09 4.51 1.98 -12.29 -0.02 4.48 16 13 H 0.01 0.41 7.89 -2.38 -0.02 0.39 16 14 C -0.49 -28.07 7.27 25.60 0.19 -27.89 16 15 H 0.02 1.54 7.82 -2.91 -0.02 1.52 16 16 C 0.04 1.90 5.14 84.65 0.44 2.34 16 17 N -0.88 -45.18 7.74 21.45 0.17 -45.01 16 18 Si 0.93 45.17 29.54 68.60 2.03 47.20 16 19 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 22 C -0.05 -2.56 4.68 -19.87 -0.09 -2.66 16 23 C -0.15 -6.60 9.70 22.27 0.22 -6.38 16 24 C -0.14 -5.09 10.05 22.27 0.22 -4.86 16 25 C -0.15 -5.04 10.05 22.27 0.22 -4.82 16 26 C -0.15 -5.48 10.05 22.27 0.22 -5.25 16 27 C -0.09 -3.83 7.56 22.27 0.17 -3.66 16 28 C 0.12 3.82 4.70 87.38 0.41 4.23 16 29 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.08 1.27 7.36 -2.39 -0.02 1.25 16 33 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.04 1.02 7.48 -2.38 -0.02 1.00 16 36 H 0.08 1.26 7.32 -2.39 -0.02 1.25 16 37 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.08 2.24 5.82 -2.39 -0.01 2.22 16 40 H 0.06 2.62 7.41 -2.39 -0.02 2.60 16 41 H 0.13 6.02 4.53 -2.39 -0.01 6.01 16 42 H 0.26 12.90 8.31 -92.71 -0.77 12.13 16 43 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 44 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 45 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 46 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 47 H 0.14 6.20 4.97 -2.91 -0.01 6.19 16 48 H 0.05 1.73 7.27 -2.39 -0.02 1.72 16 49 H 0.09 2.27 8.07 -2.39 -0.02 2.25 16 Total: -1.00 -66.08 371.14 5.52 -60.56 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.91 Total: 25.73 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 4.29 Total: -34.07 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -1.67 Total: -68.25 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.04 Total: -31.17 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -66.08 5.52 -60.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356815848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.603 kcal (2) G-P(sol) polarization free energy of solvation -66.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds