Wall clock time and date at job start Tue Mar 31 2020 10:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.05903 * 2 1 4 4 C 1.54270 * 110.02947 * 238.58781 * 2 1 3 5 5 C 1.54897 * 104.19453 * 217.10727 * 4 2 1 6 6 C 1.54885 * 102.74755 * 37.94117 * 5 4 2 7 7 H 1.09001 * 110.48465 * 80.87363 * 6 5 4 8 8 C 1.53004 * 110.48373 * 203.37982 * 6 5 4 9 9 N 1.46495 * 109.47292 * 293.54643 * 8 6 5 10 10 C 1.34773 * 120.00141 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99778 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00326 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.47532 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47271 * 305.00664 * 13 12 10 15 15 C 1.50706 * 109.46815 * 65.00591 * 13 12 10 16 16 H 1.08005 * 119.99746 * 234.68533 * 15 13 12 17 17 C 1.37875 * 120.00037 * 54.68117 * 15 13 12 18 18 N 1.31515 * 119.99977 * 4.71712 * 17 15 13 19 19 Si 1.86800 * 119.99943 * 184.71279 * 17 15 13 20 20 H 1.48501 * 109.47294 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47146 * 119.99907 * 19 17 15 22 22 H 1.48501 * 109.47425 * 240.00138 * 19 17 15 23 23 C 1.50704 * 109.47337 * 185.00188 * 13 12 10 24 24 C 1.38232 * 119.99875 * 151.58091 * 23 13 12 25 25 C 1.38235 * 120.00268 * 180.25604 * 24 23 13 26 26 C 1.38239 * 119.99325 * 359.51442 * 25 24 23 27 27 C 1.38229 * 120.00254 * 0.46372 * 26 25 24 28 28 C 1.38224 * 119.99941 * 331.56112 * 23 13 12 29 29 C 1.53870 * 110.03266 * 121.42424 * 2 1 3 30 30 H 1.08998 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46777 * 299.96290 * 1 2 3 32 32 H 1.09001 * 109.46834 * 59.96160 * 1 2 3 33 33 H 1.09001 * 110.48900 * 98.42841 * 4 2 1 34 34 H 1.08999 * 110.48962 * 335.77875 * 4 2 1 35 35 H 1.09006 * 110.75055 * 279.62464 * 5 4 2 36 36 H 1.08996 * 110.91628 * 156.33521 * 5 4 2 37 37 H 1.09007 * 109.46812 * 173.54589 * 8 6 5 38 38 H 1.08998 * 109.46779 * 53.55064 * 8 6 5 39 39 H 0.97004 * 119.99936 * 0.02562 * 9 8 6 40 40 H 1.09007 * 109.46948 * 60.00601 * 12 10 9 41 41 H 1.08998 * 109.47581 * 300.01008 * 12 10 9 42 42 H 0.96999 * 119.99919 * 180.02562 * 18 17 15 43 43 H 1.08002 * 120.00077 * 359.97438 * 24 23 13 44 44 H 1.07996 * 120.00517 * 179.72613 * 25 24 23 45 45 H 1.08005 * 119.99462 * 180.25711 * 26 25 24 46 46 H 1.08002 * 120.00095 * 179.78719 * 27 26 25 47 47 H 1.08004 * 120.00053 * 359.97438 * 28 23 13 48 48 H 1.09001 * 110.03335 * 359.97438 * 29 2 1 49 49 H 1.09003 * 110.02894 * 238.56790 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0584 -0.7554 -1.2370 5 6 3.3137 -1.5008 -0.7193 6 6 2.8874 -1.9408 0.7033 7 1 2.2791 -2.8440 0.6570 8 6 4.1175 -2.1697 1.5840 9 7 4.8731 -3.3185 1.0784 10 6 6.0033 -3.7082 1.7005 11 8 6.3946 -3.1082 2.6792 12 6 6.7803 -4.8903 1.1808 13 6 8.0103 -5.1192 2.0614 14 1 8.5968 -4.2018 2.1120 15 6 7.5694 -5.5107 3.4483 16 1 7.9188 -4.9518 4.3039 17 6 6.7199 -6.5822 3.6248 18 7 6.3682 -7.3193 2.5940 19 14 6.0686 -6.9869 5.3282 20 1 6.6098 -6.0126 6.3096 21 1 4.5855 -6.9107 5.3221 22 1 6.4921 -8.3589 5.7071 23 6 8.8520 -6.2216 1.4720 24 6 10.2177 -6.2377 1.6851 25 6 10.9905 -7.2460 1.1401 26 6 10.3961 -8.2437 0.3903 27 6 9.0304 -8.2279 0.1776 28 6 8.2583 -7.2169 0.7187 29 6 2.0571 -0.7537 1.2336 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5132 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 2.3297 -0.0535 -2.0256 34 1 1.3143 -1.4660 -1.5968 35 1 4.1710 -0.8291 -0.6753 36 1 3.5357 -2.3677 -1.3415 37 1 3.7996 -2.3661 2.6080 38 1 4.7493 -1.2818 1.5636 39 1 4.5603 -3.7981 0.2954 40 1 7.0977 -4.6945 0.1565 41 1 6.1485 -5.7782 1.2019 42 1 5.7702 -8.0729 2.7182 43 1 10.6816 -5.4600 2.2737 44 1 12.0581 -7.2561 1.3029 45 1 10.9994 -9.0338 -0.0320 46 1 8.5665 -9.0056 -0.4111 47 1 7.1911 -7.2047 0.5528 48 1 1.2229 -1.1191 1.8325 49 1 2.6867 -0.0955 1.8324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358022111.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:01 Heat of formation + Delta-G solvation = -39.312735 kcal Electronic energy + Delta-G solvation = -26334.295625 eV Core-core repulsion = 22838.815750 eV Total energy + Delta-G solvation = -3495.479875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.32180 -38.53788 -37.82257 -34.56694 -33.89961 -31.35198 -30.99268 -29.81355 -29.45569 -28.37161 -26.44132 -25.33153 -23.73753 -22.42146 -21.38561 -20.42844 -20.09813 -19.63711 -18.91286 -16.66519 -16.10735 -15.91305 -15.51378 -15.16040 -14.90344 -14.63049 -14.34098 -13.84290 -13.72019 -13.56458 -13.45364 -13.17412 -12.79456 -12.64236 -12.45019 -12.19655 -11.95710 -11.64467 -11.46010 -11.35016 -11.15450 -10.91313 -10.90592 -10.87490 -10.78910 -10.72776 -10.67909 -10.50356 -10.35692 -10.13435 -9.90154 -9.26299 -9.13961 -8.73479 -8.41588 -8.31369 -7.78016 -7.41241 -5.94786 -4.04136 2.52180 2.60833 3.31149 3.39080 3.46699 3.77615 3.91814 4.43593 4.46111 4.51083 4.56300 5.00084 5.03335 5.16925 5.25470 5.28014 5.33308 5.40588 5.49377 5.53598 5.64018 5.72706 5.77385 5.83403 5.87160 5.92933 5.94406 5.96064 6.02946 6.06408 6.10119 6.21329 6.30196 6.37521 6.41898 6.49461 6.62533 6.74669 6.80650 7.13590 7.17102 7.20237 7.29372 7.51048 7.57367 7.72325 7.96533 8.11646 8.20967 8.32602 8.39058 8.92975 9.28474 9.58979 10.99289 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.003243 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.486891 B = 8632.316619 C = 9658.626247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.069 0.931 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.103 4.103 7 H 0.079 0.921 8 C 0.130 3.870 9 N -0.748 5.748 10 C 0.522 3.478 11 O -0.529 6.529 12 C -0.139 4.139 13 C 0.088 3.912 14 H 0.037 0.963 15 C -0.467 4.467 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.286 1.286 23 C -0.028 4.028 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.154 4.154 27 C -0.144 4.144 28 C -0.068 4.068 29 C -0.114 4.114 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.393 0.607 40 H 0.051 0.949 41 H 0.131 0.869 42 H 0.259 0.741 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.140 0.860 48 H 0.066 0.934 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 8.484 -9.539 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.088 0.912 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.122 4.122 7 H 0.097 0.903 8 C 0.006 3.994 9 N -0.402 5.402 10 C 0.311 3.689 11 O -0.404 6.404 12 C -0.179 4.179 13 C 0.069 3.931 14 H 0.055 0.945 15 C -0.505 4.505 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.213 1.213 23 C -0.028 4.028 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.173 4.173 27 C -0.162 4.162 28 C -0.087 4.087 29 C -0.152 4.152 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.226 0.774 40 H 0.070 0.930 41 H 0.149 0.851 42 H 0.069 0.931 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.158 0.842 48 H 0.085 0.915 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.882 8.782 -8.796 14.718 hybrid contribution -0.618 -0.768 0.741 1.234 sum -8.501 8.013 -8.055 14.190 Atomic orbital electron populations 1.21888 0.95218 1.01744 1.01344 1.21739 0.95474 0.99396 0.94970 0.91207 1.22447 0.97456 0.98880 0.97011 1.22566 0.97618 1.00002 0.95524 1.22229 0.96110 0.98723 0.95152 0.90304 1.21204 0.91449 0.89545 0.97183 1.46165 1.27241 1.33339 1.33492 1.21135 0.79863 0.84995 0.82932 1.90609 1.68506 1.55656 1.25615 1.21920 1.01136 0.97295 0.97528 1.17631 0.90125 0.91530 0.93837 0.94500 1.21029 1.25621 1.12071 0.91766 0.92273 1.24877 0.96561 0.95784 0.96789 1.69682 1.35931 1.18390 1.29003 0.86534 0.78564 0.77914 0.85094 1.19824 1.21226 1.21257 1.20359 0.92622 0.97908 0.91937 1.20898 0.94317 0.98941 1.00821 1.20795 0.98391 0.96215 1.00629 1.20763 0.95162 0.99125 1.02200 1.21048 0.93820 0.99446 1.01883 1.21373 1.00364 0.92551 0.94388 1.22211 0.99224 0.96502 0.97264 0.92596 0.92841 0.92948 0.91919 0.91605 0.91223 0.91455 0.92289 0.92282 0.77437 0.93019 0.85115 0.93064 0.87673 0.88115 0.88328 0.88109 0.84222 0.91545 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.84 37.16 0.33 -0.75 16 2 C -0.10 -0.82 3.50 -89.50 -0.31 -1.13 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -1.01 6.36 -25.07 -0.16 -1.17 16 5 C -0.12 -1.16 6.01 -24.74 -0.15 -1.31 16 6 C -0.10 -1.12 2.93 -88.96 -0.26 -1.38 16 7 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 8 C 0.13 1.90 4.96 -4.04 -0.02 1.88 16 9 N -0.75 -12.27 5.40 -60.29 -0.33 -12.60 16 10 C 0.52 11.12 7.58 -10.99 -0.08 11.04 16 11 O -0.53 -13.31 14.98 5.55 0.08 -13.22 16 12 C -0.14 -2.98 4.08 -27.89 -0.11 -3.09 16 13 C 0.09 2.13 1.97 -92.92 -0.18 1.95 16 14 H 0.04 0.91 7.91 -51.93 -0.41 0.50 16 15 C -0.47 -12.68 7.27 -34.44 -0.25 -12.93 16 16 H 0.06 1.70 7.82 -52.48 -0.41 1.29 16 17 C 0.06 1.57 5.12 -17.82 -0.09 1.48 16 18 N -0.89 -22.81 7.97 55.43 0.44 -22.37 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 C -0.03 -0.64 4.69 -104.63 -0.49 -1.13 16 24 C -0.13 -2.84 9.71 -39.58 -0.38 -3.23 16 25 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 26 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 27 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 28 C -0.07 -1.51 7.46 -39.59 -0.30 -1.80 16 29 C -0.11 -1.10 6.03 -25.62 -0.15 -1.26 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.53 7.85 -51.93 -0.41 0.13 16 35 H 0.07 0.72 8.02 -51.93 -0.42 0.31 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.39 5.42 8.32 -40.82 -0.34 5.08 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.13 2.98 4.70 -51.93 -0.24 2.73 16 42 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 43 H 0.11 2.16 8.06 -52.49 -0.42 1.73 16 44 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 46 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 47 H 0.14 3.14 5.17 -52.48 -0.27 2.87 16 48 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 49 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -29.25 383.06 -11.22 -40.47 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -8.36 Total: 7.86 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -3.81 Total: -22.59 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.12 Total: -34.97 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.25 -11.22 -40.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358022111.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.159 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds