Wall clock time and date at job start Tue Mar 31 2020 10:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.05903 * 2 1 4 4 C 1.54270 * 110.02947 * 238.58781 * 2 1 3 5 5 C 1.54897 * 104.19453 * 217.10727 * 4 2 1 6 6 C 1.54885 * 102.74755 * 37.94117 * 5 4 2 7 7 H 1.09001 * 110.48465 * 80.87363 * 6 5 4 8 8 C 1.53004 * 110.48373 * 203.37982 * 6 5 4 9 9 N 1.46495 * 109.47292 * 293.54643 * 8 6 5 10 10 C 1.34773 * 120.00141 * 179.97438 * 9 8 6 11 11 O 1.21285 * 119.99778 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00326 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.47532 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47271 * 305.00664 * 13 12 10 15 15 C 1.50706 * 109.46815 * 65.00591 * 13 12 10 16 16 H 1.08005 * 119.99746 * 234.68533 * 15 13 12 17 17 C 1.37875 * 120.00037 * 54.68117 * 15 13 12 18 18 N 1.31515 * 119.99977 * 4.71712 * 17 15 13 19 19 Si 1.86800 * 119.99943 * 184.71279 * 17 15 13 20 20 H 1.48501 * 109.47294 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47146 * 119.99907 * 19 17 15 22 22 H 1.48501 * 109.47425 * 240.00138 * 19 17 15 23 23 C 1.50704 * 109.47337 * 185.00188 * 13 12 10 24 24 C 1.38232 * 119.99875 * 151.58091 * 23 13 12 25 25 C 1.38235 * 120.00268 * 180.25604 * 24 23 13 26 26 C 1.38239 * 119.99325 * 359.51442 * 25 24 23 27 27 C 1.38229 * 120.00254 * 0.46372 * 26 25 24 28 28 C 1.38224 * 119.99941 * 331.56112 * 23 13 12 29 29 C 1.53870 * 110.03266 * 121.42424 * 2 1 3 30 30 H 1.08998 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46777 * 299.96290 * 1 2 3 32 32 H 1.09001 * 109.46834 * 59.96160 * 1 2 3 33 33 H 1.09001 * 110.48900 * 98.42841 * 4 2 1 34 34 H 1.08999 * 110.48962 * 335.77875 * 4 2 1 35 35 H 1.09006 * 110.75055 * 279.62464 * 5 4 2 36 36 H 1.08996 * 110.91628 * 156.33521 * 5 4 2 37 37 H 1.09007 * 109.46812 * 173.54589 * 8 6 5 38 38 H 1.08998 * 109.46779 * 53.55064 * 8 6 5 39 39 H 0.97004 * 119.99936 * 0.02562 * 9 8 6 40 40 H 1.09007 * 109.46948 * 60.00601 * 12 10 9 41 41 H 1.08998 * 109.47581 * 300.01008 * 12 10 9 42 42 H 0.96999 * 119.99919 * 180.02562 * 18 17 15 43 43 H 1.08002 * 120.00077 * 359.97438 * 24 23 13 44 44 H 1.07996 * 120.00517 * 179.72613 * 25 24 23 45 45 H 1.08005 * 119.99462 * 180.25711 * 26 25 24 46 46 H 1.08002 * 120.00095 * 179.78719 * 27 26 25 47 47 H 1.08004 * 120.00053 * 359.97438 * 28 23 13 48 48 H 1.09001 * 110.03335 * 359.97438 * 29 2 1 49 49 H 1.09003 * 110.02894 * 238.56790 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0584 -0.7554 -1.2370 5 6 3.3137 -1.5008 -0.7193 6 6 2.8874 -1.9408 0.7033 7 1 2.2791 -2.8440 0.6570 8 6 4.1175 -2.1697 1.5840 9 7 4.8731 -3.3185 1.0784 10 6 6.0033 -3.7082 1.7005 11 8 6.3946 -3.1082 2.6792 12 6 6.7803 -4.8903 1.1808 13 6 8.0103 -5.1192 2.0614 14 1 8.5968 -4.2018 2.1120 15 6 7.5694 -5.5107 3.4483 16 1 7.9188 -4.9518 4.3039 17 6 6.7199 -6.5822 3.6248 18 7 6.3682 -7.3193 2.5940 19 14 6.0686 -6.9869 5.3282 20 1 6.6098 -6.0126 6.3096 21 1 4.5855 -6.9107 5.3221 22 1 6.4921 -8.3589 5.7071 23 6 8.8520 -6.2216 1.4720 24 6 10.2177 -6.2377 1.6851 25 6 10.9905 -7.2460 1.1401 26 6 10.3961 -8.2437 0.3903 27 6 9.0304 -8.2279 0.1776 28 6 8.2583 -7.2169 0.7187 29 6 2.0571 -0.7537 1.2336 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5132 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 2.3297 -0.0535 -2.0256 34 1 1.3143 -1.4660 -1.5968 35 1 4.1710 -0.8291 -0.6753 36 1 3.5357 -2.3677 -1.3415 37 1 3.7996 -2.3661 2.6080 38 1 4.7493 -1.2818 1.5636 39 1 4.5603 -3.7981 0.2954 40 1 7.0977 -4.6945 0.1565 41 1 6.1485 -5.7782 1.2019 42 1 5.7702 -8.0729 2.7182 43 1 10.6816 -5.4600 2.2737 44 1 12.0581 -7.2561 1.3029 45 1 10.9994 -9.0338 -0.0320 46 1 8.5665 -9.0056 -0.4111 47 1 7.1911 -7.2047 0.5528 48 1 1.2229 -1.1191 1.8325 49 1 2.6867 -0.0955 1.8324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358022111.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:00 Heat of formation + Delta-G solvation = -53.006532 kcal Electronic energy + Delta-G solvation = -26334.889433 eV Core-core repulsion = 22838.815750 eV Total energy + Delta-G solvation = -3496.073683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75198 -39.83904 -39.23887 -36.18362 -35.47715 -32.98956 -32.28107 -31.39634 -30.44108 -29.83369 -27.99058 -26.59537 -24.84891 -24.04226 -22.97829 -21.69682 -21.27093 -20.92210 -20.15011 -18.39799 -17.72960 -17.26879 -16.94478 -16.82475 -16.27951 -15.84440 -15.73289 -15.46123 -15.21768 -14.84056 -14.48209 -14.32829 -14.20227 -13.88099 -13.78536 -13.47350 -13.35104 -13.17772 -13.10882 -12.86823 -12.80585 -12.67091 -12.21957 -12.01218 -11.86310 -11.71171 -11.68566 -11.59033 -11.57466 -11.48431 -11.25294 -11.06314 -11.03223 -10.60386 -10.26274 -9.85861 -9.39013 -9.10945 -7.94232 -6.09948 0.89824 1.01099 1.33788 1.37764 1.48243 2.06588 2.44725 2.52123 3.19714 3.38448 3.62429 3.68601 3.79116 4.22090 4.29622 4.34477 4.39453 4.43604 4.44579 4.53149 4.59402 4.61666 4.70178 4.71189 4.78082 4.80394 4.85812 4.91115 4.92391 5.01786 5.09500 5.10087 5.15916 5.17263 5.22239 5.35146 5.38201 5.40970 5.47982 5.54902 5.60187 5.63316 5.68886 5.73806 5.91534 5.95803 6.10746 6.37462 6.43567 6.59166 6.81109 6.88065 7.52105 7.65120 8.94907 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.003243 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.486891 B = 8632.316619 C = 9658.626247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.095 4.095 7 H 0.084 0.916 8 C 0.132 3.868 9 N -0.729 5.729 10 C 0.517 3.483 11 O -0.576 6.576 12 C -0.129 4.129 13 C 0.089 3.911 14 H 0.013 0.987 15 C -0.490 4.490 16 H 0.025 0.975 17 C 0.035 3.965 18 N -0.884 5.884 19 Si 0.928 3.072 20 H -0.288 1.288 21 H -0.280 1.280 22 H -0.279 1.279 23 C -0.053 4.053 24 C -0.152 4.152 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.147 4.147 28 C -0.081 4.081 29 C -0.114 4.114 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.408 0.592 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.261 0.739 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.127 0.873 47 H 0.132 0.868 48 H 0.069 0.931 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.729 7.309 -11.616 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.113 4.113 7 H 0.102 0.898 8 C 0.008 3.992 9 N -0.382 5.382 10 C 0.306 3.694 11 O -0.455 6.455 12 C -0.169 4.169 13 C 0.070 3.930 14 H 0.031 0.969 15 C -0.528 4.528 16 H 0.044 0.956 17 C -0.164 4.164 18 N -0.523 5.523 19 Si 0.756 3.244 20 H -0.214 1.214 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.053 4.053 24 C -0.170 4.170 25 C -0.158 4.158 26 C -0.166 4.166 27 C -0.165 4.165 28 C -0.099 4.099 29 C -0.153 4.153 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.244 0.756 40 H 0.093 0.907 41 H 0.141 0.859 42 H 0.072 0.928 43 H 0.120 0.880 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.145 0.855 47 H 0.149 0.851 48 H 0.088 0.912 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.580 7.595 -10.925 15.832 hybrid contribution -0.354 -0.399 1.363 1.463 sum -8.934 7.196 -9.562 14.934 Atomic orbital electron populations 1.21869 0.94281 1.01909 1.01933 1.21734 0.96235 0.99271 0.94168 0.90971 1.22429 0.96718 0.99020 0.97114 1.22564 0.98130 1.00307 0.94671 1.22169 0.94368 0.99580 0.95229 0.89776 1.21300 0.92603 0.88244 0.97084 1.45955 1.25708 1.33407 1.33167 1.21190 0.80897 0.84784 0.82529 1.90588 1.70003 1.57178 1.27736 1.21756 0.99932 0.96993 0.98198 1.17516 0.91121 0.91081 0.93304 0.96890 1.20975 1.27057 1.12541 0.92244 0.95644 1.25206 0.96625 0.95750 0.98846 1.69757 1.35481 1.18043 1.29048 0.85969 0.78293 0.77448 0.82675 1.21414 1.20589 1.20509 1.20321 0.93297 0.98165 0.93532 1.21075 0.94249 1.00081 1.01623 1.21152 0.99858 0.95237 0.99554 1.21204 0.95101 0.99410 1.00923 1.21373 0.94449 0.99186 1.01480 1.21334 1.00263 0.93220 0.95102 1.22229 0.99021 0.96001 0.98001 0.92630 0.92672 0.92004 0.90954 0.90859 0.92056 0.90798 0.94318 0.93045 0.75584 0.90651 0.85905 0.92849 0.88015 0.85029 0.84590 0.85499 0.85063 0.91190 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.84 71.98 0.64 -1.20 16 2 C -0.10 -1.44 3.50 -10.07 -0.04 -1.48 16 3 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.12 -1.68 6.36 31.67 0.20 -1.48 16 5 C -0.12 -2.13 6.01 31.89 0.19 -1.94 16 6 C -0.09 -1.97 2.93 -9.72 -0.03 -2.00 16 7 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 8 C 0.13 3.89 4.96 86.38 0.43 4.32 16 9 N -0.73 -24.05 5.40 -463.06 -2.50 -26.55 16 10 C 0.52 22.71 7.58 87.66 0.66 23.37 16 11 O -0.58 -30.50 14.98 -3.05 -0.05 -30.55 16 12 C -0.13 -5.65 4.08 29.85 0.12 -5.52 16 13 C 0.09 4.49 1.97 -12.28 -0.02 4.47 16 14 H 0.01 0.68 7.91 -2.39 -0.02 0.66 16 15 C -0.49 -27.79 7.27 25.60 0.19 -27.60 16 16 H 0.03 1.56 7.82 -2.91 -0.02 1.53 16 17 C 0.04 1.89 5.12 84.65 0.43 2.33 16 18 N -0.88 -45.24 7.97 21.45 0.17 -45.06 16 19 Si 0.93 45.04 29.54 68.60 2.03 47.06 16 20 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 C -0.05 -2.46 4.69 -19.87 -0.09 -2.55 16 24 C -0.15 -6.57 9.71 22.27 0.22 -6.35 16 25 C -0.14 -5.11 10.05 22.27 0.22 -4.88 16 26 C -0.15 -5.10 10.05 22.27 0.22 -4.88 16 27 C -0.15 -5.47 10.05 22.27 0.22 -5.25 16 28 C -0.08 -3.50 7.46 22.27 0.17 -3.33 16 29 C -0.11 -2.11 6.03 31.32 0.19 -1.92 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.98 7.85 -2.39 -0.02 0.97 16 35 H 0.06 1.21 8.02 -2.38 -0.02 1.19 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 39 H 0.41 10.90 8.32 -92.71 -0.77 10.12 16 40 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 41 H 0.12 5.64 4.70 -2.39 -0.01 5.63 16 42 H 0.26 12.89 8.31 -92.71 -0.77 12.12 16 43 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 44 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 45 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 46 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 47 H 0.13 5.83 5.17 -2.91 -0.02 5.82 16 48 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 49 H 0.06 1.20 7.84 -2.39 -0.02 1.18 16 Total: -1.00 -64.72 383.06 3.73 -60.99 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.15 Total: 30.00 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 3.92 Total: -35.90 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -2.33 Total: -71.61 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.05 Total: -30.55 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.72 3.73 -60.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358022111.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.987 kcal (2) G-P(sol) polarization free energy of solvation -64.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds