Wall clock time and date at job start Tue Mar 31 2020 10:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.43298 * 2 1 4 4 C 1.54264 * 110.48172 * 237.45842 * 2 1 3 5 5 C 1.53880 * 106.59470 * 217.58112 * 4 2 1 6 6 C 1.54261 * 106.60123 * 359.97438 * 5 4 2 7 7 H 1.08994 * 110.49024 * 264.93216 * 6 5 4 8 8 C 1.52999 * 110.48570 * 142.28578 * 6 5 4 9 9 N 1.46500 * 109.46909 * 66.45889 * 8 6 5 10 10 C 1.34771 * 120.00230 * 180.02562 * 9 8 6 11 11 O 1.21292 * 120.00135 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00560 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47825 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.47072 * 305.00317 * 13 12 10 15 15 C 1.50704 * 109.46753 * 64.99861 * 13 12 10 16 16 H 1.08003 * 120.00217 * 234.67966 * 15 13 12 17 17 C 1.37872 * 120.00161 * 54.68334 * 15 13 12 18 18 N 1.31515 * 119.99835 * 4.90909 * 17 15 13 19 19 Si 1.86803 * 120.00305 * 184.90776 * 17 15 13 20 20 H 1.48500 * 109.46749 * 89.99714 * 19 17 15 21 21 H 1.48500 * 109.47335 * 209.99749 * 19 17 15 22 22 H 1.48494 * 109.47185 * 330.00072 * 19 17 15 23 23 C 1.50689 * 109.47689 * 184.99803 * 13 12 10 24 24 C 1.38240 * 120.00447 * 151.46154 * 23 13 12 25 25 C 1.38234 * 120.00208 * 179.76637 * 24 23 13 26 26 C 1.38230 * 119.99922 * 0.51595 * 25 24 23 27 27 C 1.38237 * 120.00454 * 359.74084 * 26 25 24 28 28 C 1.38236 * 119.99379 * 0.02562 * 27 26 25 29 29 C 1.54891 * 110.59517 * 122.61956 * 2 1 3 30 30 H 1.08996 * 109.47335 * 179.30018 * 1 2 3 31 31 H 1.09004 * 109.46648 * 299.30227 * 1 2 3 32 32 H 1.08994 * 109.46900 * 59.29301 * 1 2 3 33 33 H 1.09003 * 110.03358 * 336.86454 * 4 2 1 34 34 H 1.09001 * 110.03226 * 98.29870 * 4 2 1 35 35 H 1.09003 * 110.03097 * 119.29252 * 5 4 2 36 36 H 1.09005 * 110.03113 * 240.71560 * 5 4 2 37 37 H 1.08998 * 109.47093 * 186.45706 * 8 6 5 38 38 H 1.09002 * 109.47293 * 306.45844 * 8 6 5 39 39 H 0.97001 * 120.00300 * 359.97438 * 9 8 6 40 40 H 1.08998 * 109.47052 * 299.99822 * 12 10 9 41 41 H 1.09002 * 109.46892 * 59.99690 * 12 10 9 42 42 H 0.97002 * 119.99815 * 180.02562 * 18 17 15 43 43 H 1.08000 * 119.99178 * 0.02562 * 24 23 13 44 44 H 1.07996 * 119.99697 * 180.23141 * 25 24 23 45 45 H 1.08001 * 120.00247 * 179.72248 * 26 25 24 46 46 H 1.07996 * 120.00359 * 179.97438 * 27 26 25 47 47 H 1.08005 * 120.00127 * 179.97438 * 28 27 26 48 48 H 1.08999 * 110.75518 * 274.98745 * 29 2 1 49 49 H 1.08998 * 110.76042 * 38.35958 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0698 -0.7773 -1.2182 5 6 3.3184 -1.5370 -0.7368 6 6 3.4941 -1.1943 0.7570 7 1 4.1920 -0.3660 0.8788 8 6 3.9756 -2.4207 1.5347 9 7 5.3290 -2.7745 1.0995 10 6 5.9598 -3.8302 1.6507 11 8 5.4072 -4.4872 2.5076 12 6 7.3518 -4.1946 1.2027 13 6 7.8334 -5.4209 1.9804 14 1 7.7585 -5.2253 3.0501 15 6 6.9767 -6.6089 1.6258 16 1 6.4819 -7.1697 2.4050 17 6 6.8246 -6.9800 0.3067 18 7 7.5024 -6.3586 -0.6335 19 14 5.6557 -8.3653 -0.1451 20 1 4.3041 -7.8076 -0.4047 21 1 6.1504 -9.0524 -1.3651 22 1 5.5833 -9.3371 0.9753 23 6 9.2680 -5.7114 1.6223 24 6 10.0983 -6.3281 2.5395 25 6 11.4130 -6.5990 2.2091 26 6 11.9004 -6.2435 0.9654 27 6 11.0717 -5.6220 0.0500 28 6 9.7557 -5.3555 0.3787 29 6 2.0749 -0.7816 1.2212 30 1 -0.3634 -1.0275 -0.0126 31 1 -0.3633 0.5030 0.8962 32 1 -0.3633 0.5248 -0.8835 33 1 1.3183 -1.4820 -1.5745 34 1 2.3390 -0.0834 -2.0146 35 1 3.1729 -2.6103 -0.8595 36 1 4.1935 -1.2118 -1.2995 37 1 3.9844 -2.1944 2.6009 38 1 3.3030 -3.2575 1.3464 39 1 5.7709 -2.2494 0.4140 40 1 7.3427 -4.4207 0.1365 41 1 8.0247 -3.3580 1.3910 42 1 7.3951 -6.6194 -1.5616 43 1 9.7185 -6.6021 3.5127 44 1 12.0605 -7.0842 2.9244 45 1 12.9287 -6.4510 0.7089 46 1 11.4526 -5.3439 -0.9215 47 1 9.1083 -4.8696 -0.3363 48 1 2.1278 -0.1381 2.0994 49 1 1.4627 -1.6608 1.4217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358022112.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:03 Heat of formation + Delta-G solvation = -53.253429 kcal Electronic energy + Delta-G solvation = -26392.229215 eV Core-core repulsion = 22896.144826 eV Total energy + Delta-G solvation = -3496.084389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.75205 -39.83060 -39.22271 -36.18347 -35.47896 -32.99408 -32.32081 -31.39860 -30.43788 -29.82986 -28.01348 -26.64510 -24.82973 -24.04300 -22.97957 -21.73279 -21.27214 -20.58433 -20.41377 -18.39205 -17.73087 -17.20602 -16.93509 -16.90468 -16.54168 -15.98465 -15.49336 -15.28022 -15.06173 -14.99156 -14.51378 -14.38517 -14.25927 -13.90579 -13.77805 -13.48058 -13.34916 -13.20896 -13.10633 -12.84169 -12.76532 -12.68135 -12.23074 -12.01775 -11.86300 -11.84278 -11.70561 -11.61470 -11.55493 -11.44768 -11.23682 -11.06482 -11.03161 -10.60466 -10.26512 -9.86219 -9.39041 -9.11041 -7.94384 -6.10025 0.89769 1.01128 1.34568 1.37278 1.45599 2.06083 2.44150 2.51875 3.19648 3.38479 3.60961 3.64252 3.81002 4.23676 4.27812 4.34471 4.39781 4.43746 4.45882 4.49894 4.53193 4.67111 4.70266 4.73177 4.75423 4.79999 4.82327 4.89206 4.92135 5.00115 5.09488 5.11302 5.14320 5.15963 5.21034 5.33214 5.36262 5.40885 5.48752 5.54904 5.59560 5.62813 5.68737 5.73208 5.91122 5.95753 6.10579 6.37284 6.43481 6.59069 6.80749 6.87740 7.51870 7.64765 8.94624 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016186 B = 0.003245 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.442860 B = 8625.307745 C = 9323.274366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.085 0.915 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.092 4.092 7 H 0.096 0.904 8 C 0.131 3.869 9 N -0.729 5.729 10 C 0.517 3.483 11 O -0.576 6.576 12 C -0.129 4.129 13 C 0.089 3.911 14 H 0.013 0.987 15 C -0.491 4.491 16 H 0.025 0.975 17 C 0.036 3.964 18 N -0.883 5.883 19 Si 0.927 3.073 20 H -0.287 1.287 21 H -0.276 1.276 22 H -0.285 1.285 23 C -0.052 4.052 24 C -0.152 4.152 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.146 4.146 28 C -0.081 4.081 29 C -0.112 4.112 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.037 0.963 39 H 0.408 0.592 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.261 0.739 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.127 0.873 47 H 0.131 0.869 48 H 0.078 0.922 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 14.712 -3.111 15.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.103 0.897 4 C -0.156 4.156 5 C -0.161 4.161 6 C -0.111 4.111 7 H 0.114 0.886 8 C 0.007 3.993 9 N -0.383 5.383 10 C 0.306 3.694 11 O -0.455 6.455 12 C -0.169 4.169 13 C 0.070 3.930 14 H 0.031 0.969 15 C -0.529 4.529 16 H 0.044 0.956 17 C -0.163 4.163 18 N -0.522 5.522 19 Si 0.755 3.245 20 H -0.214 1.214 21 H -0.202 1.202 22 H -0.210 1.210 23 C -0.053 4.053 24 C -0.170 4.170 25 C -0.158 4.158 26 C -0.166 4.166 27 C -0.165 4.165 28 C -0.099 4.099 29 C -0.150 4.150 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.244 0.756 40 H 0.141 0.859 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.120 0.880 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.145 0.855 47 H 0.149 0.851 48 H 0.097 0.903 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.612 14.216 -2.702 15.188 hybrid contribution -0.747 -1.239 -0.375 1.494 sum -5.359 12.977 -3.078 14.374 Atomic orbital electron populations 1.21797 0.94497 1.01622 1.02192 1.21946 0.95887 0.99375 0.93839 0.89671 1.22216 0.96494 0.98787 0.98095 1.22223 0.99070 0.99643 0.95180 1.22182 0.98308 0.95939 0.94674 0.88617 1.21297 0.82937 0.96635 0.98391 1.45962 1.17217 1.31735 1.43356 1.21197 0.89185 0.78654 0.80396 1.90588 1.68879 1.52057 1.33982 1.21757 0.90982 0.98088 1.06051 1.17508 0.89122 0.92974 0.93382 0.96853 1.20949 1.26866 1.13207 0.91914 0.95618 1.25193 0.96541 0.98126 0.96466 1.69757 1.40255 1.41917 1.00307 0.86041 0.80023 0.80890 0.77511 1.21390 1.20166 1.21029 1.20317 0.94930 0.95611 0.94407 1.21076 0.94795 1.01653 0.99520 1.21149 0.95191 1.01703 0.97728 1.21199 1.00254 1.01062 0.94123 1.21369 0.94287 1.01025 0.99778 1.21323 0.94195 0.98922 0.95470 1.22580 0.94043 0.99940 0.98454 0.93352 0.92083 0.91976 0.92319 0.90811 0.93744 0.90911 0.92862 0.94493 0.75589 0.85946 0.90633 0.92854 0.88018 0.85033 0.84589 0.85506 0.85130 0.90330 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.13 71.98 0.66 -1.31 16 2 C -0.09 -1.39 3.45 -9.72 -0.03 -1.42 16 3 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.12 -2.00 6.37 31.32 0.20 -1.80 16 5 C -0.12 -2.55 6.05 31.32 0.19 -2.36 16 6 C -0.09 -1.90 2.93 -9.71 -0.03 -1.93 16 7 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 8 C 0.13 3.88 4.99 86.38 0.43 4.32 16 9 N -0.73 -24.14 5.39 -463.06 -2.50 -26.64 16 10 C 0.52 22.75 7.58 87.66 0.66 23.42 16 11 O -0.58 -30.55 14.98 -3.07 -0.05 -30.60 16 12 C -0.13 -5.65 4.07 29.85 0.12 -5.53 16 13 C 0.09 4.51 1.97 -12.29 -0.02 4.49 16 14 H 0.01 0.70 7.91 -2.39 -0.02 0.68 16 15 C -0.49 -27.88 7.27 25.60 0.19 -27.69 16 16 H 0.03 1.57 7.82 -2.91 -0.02 1.55 16 17 C 0.04 1.96 5.12 84.65 0.43 2.39 16 18 N -0.88 -45.28 7.99 21.45 0.17 -45.11 16 19 Si 0.93 45.17 29.54 68.60 2.03 47.20 16 20 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 23 C -0.05 -2.44 4.69 -19.87 -0.09 -2.53 16 24 C -0.15 -6.58 9.71 22.27 0.22 -6.36 16 25 C -0.14 -5.10 10.05 22.27 0.22 -4.87 16 26 C -0.15 -5.10 10.05 22.27 0.22 -4.88 16 27 C -0.15 -5.46 10.05 22.27 0.22 -5.24 16 28 C -0.08 -3.50 7.45 22.27 0.17 -3.33 16 29 C -0.11 -2.01 5.76 31.90 0.18 -1.82 16 30 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 1.05 7.82 -2.39 -0.02 1.03 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 1.14 7.77 -2.39 -0.02 1.12 16 36 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.27 8.05 -2.39 -0.02 1.25 16 39 H 0.41 10.94 8.32 -92.71 -0.77 10.17 16 40 H 0.12 5.63 4.71 -2.39 -0.01 5.62 16 41 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 42 H 0.26 12.96 8.31 -92.71 -0.77 12.19 16 43 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 44 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 45 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 46 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 47 H 0.13 5.80 5.18 -2.91 -0.02 5.79 16 48 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.06 1.23 7.98 -2.39 -0.02 1.21 16 Total: -1.00 -64.97 383.40 3.74 -61.23 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.15 Total: 30.38 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 3.94 Total: -36.46 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -2.33 Total: -71.75 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.05 Total: -30.60 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -64.97 3.74 -61.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358022112.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.975 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds