Wall clock time and date at job start Tue Mar 31 2020 12:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99665 * 2 1 4 4 H 1.48501 * 109.46960 * 269.99568 * 3 2 1 5 5 H 1.48497 * 109.47468 * 29.99808 * 3 2 1 6 6 H 1.48504 * 109.47043 * 150.00139 * 3 2 1 7 7 C 1.38810 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99976 * 194.65270 * 7 2 1 9 9 N 1.36933 * 119.99990 * 14.65878 * 7 2 1 10 10 C 1.47084 * 120.87854 * 208.63422 * 9 7 2 11 11 C 1.53241 * 108.51913 * 231.20185 * 10 9 7 12 12 N 1.46893 * 109.33990 * 306.17162 * 11 10 9 13 13 C 1.46901 * 110.99771 * 187.25341 * 12 11 10 14 14 H 1.08999 * 110.63039 * 297.81372 * 13 12 11 15 15 C 1.55431 * 110.69620 * 174.53909 * 13 12 11 16 16 C 1.54907 * 101.52553 * 205.97553 * 15 13 12 17 17 N 1.47842 * 104.89040 * 37.06459 * 16 15 13 18 18 C 1.46903 * 110.99935 * 213.57928 * 17 16 15 19 19 C 1.50699 * 109.47170 * 290.12998 * 18 17 16 20 20 C 1.38236 * 119.99866 * 269.72540 * 19 18 17 21 21 C 1.38236 * 119.99907 * 179.76813 * 20 19 18 22 22 C 1.38231 * 119.99824 * 0.48045 * 21 20 19 23 23 C 1.38237 * 120.00334 * 359.79255 * 22 21 20 24 24 C 1.38233 * 120.00088 * 89.99479 * 19 18 17 25 25 C 1.47442 * 108.56954 * 335.84889 * 17 16 15 26 26 C 1.46892 * 111.27172 * 63.10578 * 12 11 10 27 27 C 1.47072 * 120.88445 * 28.65192 * 9 7 2 28 28 H 0.96998 * 120.00236 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.62787 * 111.49353 * 10 9 7 30 30 H 1.09007 * 109.63039 * 350.91203 * 10 9 7 31 31 H 1.08998 * 109.49038 * 186.21037 * 11 10 9 32 32 H 1.08998 * 109.51238 * 66.14847 * 11 10 9 33 33 H 1.08996 * 111.10351 * 87.89981 * 15 13 12 34 34 H 1.09005 * 110.99875 * 323.99974 * 15 13 12 35 35 H 1.08996 * 110.37429 * 278.17860 * 16 15 13 36 36 H 1.08997 * 110.37136 * 155.94519 * 16 15 13 37 37 H 1.09005 * 109.46871 * 50.12826 * 18 17 16 38 38 H 1.08998 * 109.47362 * 170.12909 * 18 17 16 39 39 H 1.08003 * 119.99816 * 359.97438 * 20 19 18 40 40 H 1.07997 * 119.99872 * 180.25301 * 21 20 19 41 41 H 1.08000 * 120.00019 * 179.76811 * 22 21 20 42 42 H 1.07998 * 119.99851 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.00412 * 0.02562 * 24 19 18 44 44 H 1.08996 * 109.88689 * 120.39536 * 25 17 16 45 45 H 1.08998 * 109.88931 * 241.58480 * 25 17 16 46 46 H 1.09000 * 109.49387 * 56.84989 * 26 12 11 47 47 H 1.09005 * 109.49613 * 176.93338 * 26 12 11 48 48 H 1.09000 * 109.63291 * 248.50367 * 27 9 7 49 49 H 1.08997 * 109.62934 * 9.09022 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0639 -1.2172 0.2372 9 7 1.3590 -2.3688 -0.2990 10 6 1.8113 -3.6512 0.2615 11 6 1.9692 -4.6551 -0.8854 12 7 0.7177 -4.7191 -1.6517 13 6 0.7678 -5.7927 -2.6531 14 1 1.5613 -5.6062 -3.3767 15 6 -0.6055 -5.9444 -3.3651 16 6 -0.5643 -7.4295 -3.8038 17 7 0.1184 -8.1337 -2.6975 18 6 0.9216 -9.2549 -3.2033 19 6 0.0066 -10.3439 -3.7013 20 6 -0.4128 -11.3413 -2.8410 21 6 -1.2559 -12.3376 -3.2966 22 6 -1.6717 -12.3419 -4.6149 23 6 -1.2477 -11.3476 -5.4766 24 6 -0.4088 -10.3484 -5.0197 25 6 0.9610 -7.1645 -1.9731 26 6 0.4108 -3.4273 -2.2799 27 6 0.1890 -2.3730 -1.1901 28 1 -0.4850 0.8400 -0.0004 29 1 1.0726 -4.0209 0.9726 30 1 2.7696 -3.5141 0.7627 31 1 2.1970 -5.6401 -0.4778 32 1 2.7804 -4.3358 -1.5396 33 1 -0.6746 -5.2838 -4.2292 34 1 -1.4270 -5.7649 -2.6715 35 1 0.0025 -7.5364 -4.7287 36 1 -1.5755 -7.8154 -3.9324 37 1 1.5537 -8.9091 -4.0213 38 1 1.5473 -9.6449 -2.4005 39 1 -0.0844 -11.3404 -1.8121 40 1 -1.5869 -13.1145 -2.6234 41 1 -2.3274 -13.1223 -4.9718 42 1 -1.5722 -11.3512 -6.5067 43 1 -0.0773 -9.5718 -5.6931 44 1 0.6490 -7.1087 -0.9303 45 1 2.0072 -7.4645 -2.0339 46 1 1.2436 -3.1245 -2.9146 47 1 -0.4918 -3.5217 -2.8838 48 1 -0.7057 -2.6199 -0.6186 49 1 0.0745 -1.3909 -1.6488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374283515.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:59 Heat of formation + Delta-G solvation = 69.225807 kcal Electronic energy + Delta-G solvation = -26298.848308 eV Core-core repulsion = 22840.367768 eV Total energy + Delta-G solvation = -3458.480540 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.201 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.96031 -38.95017 -37.24601 -34.43351 -32.68707 -31.16156 -31.09871 -30.24549 -29.66662 -28.18418 -26.12919 -25.03953 -22.92879 -22.83941 -22.60659 -21.49705 -20.47340 -20.17063 -19.08417 -17.12586 -16.87855 -16.05706 -15.95818 -15.42231 -15.19565 -14.76532 -14.23512 -14.14394 -13.91351 -13.60957 -13.56281 -13.33003 -13.28520 -13.22992 -13.06227 -12.65593 -12.28517 -12.06954 -11.87657 -11.59907 -11.29634 -11.24003 -11.03289 -10.98812 -10.89976 -10.75626 -10.69357 -10.39735 -10.25175 -10.00904 -9.71557 -9.56237 -9.11040 -8.98883 -8.49488 -8.37782 -7.80064 -6.61727 -5.76219 -3.20071 1.13451 1.21360 3.38033 3.44677 3.46100 3.49968 4.02749 4.34197 4.50237 4.52220 4.62990 4.72012 4.80153 4.84768 4.92307 5.04136 5.23657 5.28743 5.31954 5.37914 5.40895 5.44367 5.45271 5.55984 5.64168 5.79792 5.83927 5.85002 5.91628 5.94187 5.95756 6.15887 6.17933 6.23895 6.24898 6.30696 6.35969 6.36247 6.43267 6.56344 6.71806 6.79264 6.89863 6.96327 6.98065 7.27218 7.65408 7.68403 7.73341 7.83875 8.46689 9.23578 9.86171 10.45919 11.32438 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.041616 B = 0.002302 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.663742 B =12158.984479 C =12423.792417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.596 5.596 10 C 0.149 3.851 11 C 0.043 3.957 12 N -0.519 5.519 13 C 0.062 3.938 14 H 0.037 0.963 15 C -0.119 4.119 16 C 0.046 3.954 17 N -0.519 5.519 18 C 0.087 3.913 19 C -0.072 4.072 20 C -0.099 4.099 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.113 4.113 25 C 0.052 3.948 26 C 0.036 3.964 27 C 0.180 3.820 28 H 0.254 0.746 29 H 0.026 0.974 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.022 0.978 47 H 0.062 0.938 48 H 0.027 0.973 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -22.708 -10.310 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.319 5.319 10 C 0.023 3.977 11 C -0.087 4.087 12 N -0.244 5.244 13 C -0.048 4.048 14 H 0.055 0.945 15 C -0.158 4.158 16 C -0.082 4.082 17 N -0.243 5.243 18 C -0.041 4.041 19 C -0.073 4.073 20 C -0.117 4.117 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.132 4.132 25 C -0.076 4.076 26 C -0.093 4.093 27 C 0.054 3.946 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.111 0.889 45 H 0.067 0.933 46 H 0.040 0.960 47 H 0.080 0.920 48 H 0.045 0.955 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.906 -22.848 -9.603 24.857 hybrid contribution 1.666 1.365 -1.224 2.477 sum -0.239 -21.484 -10.827 24.059 Atomic orbital electron populations 1.70009 1.05181 1.25435 1.54176 1.25090 0.95364 0.98351 1.00885 0.86274 0.79062 0.83704 0.77618 1.21532 1.21705 1.20474 1.19185 0.91769 0.84450 1.42728 0.91782 1.44098 1.33679 1.02029 1.52090 1.20977 0.97770 0.86443 0.92558 1.22640 0.89559 0.99434 0.97019 1.62057 1.33940 1.04475 1.23974 1.22879 0.96397 0.92366 0.93138 0.94488 1.22805 0.98069 0.94818 1.00081 1.23034 0.99477 0.93448 0.92194 1.63648 1.28131 1.08595 1.23958 1.21268 0.93223 0.90716 0.98890 1.19756 0.98329 0.95666 0.93506 1.21042 0.97311 0.94004 0.99392 1.21151 0.98134 0.98839 0.95871 1.21134 1.00252 0.98862 0.93989 1.21104 0.98235 0.95019 0.99658 1.21064 0.98224 0.98517 0.95394 1.22883 0.95094 0.89682 0.99898 1.22902 0.98588 0.89663 0.98153 1.20841 0.89008 0.95827 0.88957 0.93621 0.95594 0.92714 0.91976 0.95708 0.91204 0.89355 0.94003 0.90325 0.93959 0.89972 0.85964 0.86178 0.86350 0.86281 0.86494 0.88918 0.93251 0.95989 0.91997 0.95494 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 11.16 55.49 0.62 -25.84 16 2 C 0.00 0.05 4.98 -17.43 -0.09 -0.04 16 3 Si 0.90 21.85 29.58 -169.99 -5.03 16.82 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.99 9.62 -15.06 -0.14 -7.14 16 8 H 0.06 1.75 7.87 -52.48 -0.41 1.34 16 9 N -0.60 -15.28 3.03 -172.01 -0.52 -15.80 16 10 C 0.15 3.21 6.69 -3.60 -0.02 3.19 16 11 C 0.04 0.77 5.44 -3.70 -0.02 0.75 16 12 N -0.52 -9.23 4.45 -223.98 -1.00 -10.23 16 13 C 0.06 0.90 2.65 -65.73 -0.17 0.73 16 14 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 15 C -0.12 -1.56 5.42 -24.43 -0.13 -1.69 16 16 C 0.05 0.53 5.62 -2.30 -0.01 0.51 16 17 N -0.52 -6.17 5.15 -232.69 -1.20 -7.36 16 18 C 0.09 0.87 4.74 -4.97 -0.02 0.85 16 19 C -0.07 -0.72 5.11 -104.62 -0.53 -1.25 16 20 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.11 -1.05 8.95 -39.58 -0.35 -1.40 16 25 C 0.05 0.67 5.31 -2.83 -0.02 0.65 16 26 C 0.04 0.71 5.47 -3.70 -0.02 0.69 16 27 C 0.18 4.39 5.39 -3.61 -0.02 4.37 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.13 7.95 -51.92 -0.41 0.72 16 31 H 0.06 0.96 6.75 -51.93 -0.35 0.61 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.04 0.44 7.04 -51.93 -0.37 0.07 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.04 0.41 7.77 -51.93 -0.40 0.01 16 38 H 0.08 0.77 7.95 -51.93 -0.41 0.35 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.97 7.53 -52.48 -0.40 0.57 16 44 H 0.09 1.33 7.67 -51.93 -0.40 0.93 16 45 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.11 6.81 -51.93 -0.35 0.75 16 48 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.09 2.32 6.20 -51.93 -0.32 2.00 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -30.11 376.48 -13.01 -43.12 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -8.42 Total: -0.99 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.14 Total: -5.39 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -2.10 Total: -59.23 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.11 -13.01 -43.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374283515.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.347 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds