Wall clock time and date at job start Tue Mar 31 2020 12:31:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86804 * 119.99665 * 2 1
4 4 H 1.48501 * 109.46960 * 269.99568 * 3 2 1
5 5 H 1.48497 * 109.47468 * 29.99808 * 3 2 1
6 6 H 1.48504 * 109.47043 * 150.00139 * 3 2 1
7 7 C 1.38810 * 120.00035 * 179.97438 * 2 1 3
8 8 H 1.08006 * 119.99976 * 194.65270 * 7 2 1
9 9 N 1.36933 * 119.99990 * 14.65878 * 7 2 1
10 10 C 1.47084 * 120.87854 * 208.63422 * 9 7 2
11 11 C 1.53241 * 108.51913 * 231.20185 * 10 9 7
12 12 N 1.46893 * 109.33990 * 306.17162 * 11 10 9
13 13 C 1.46901 * 110.99771 * 187.25341 * 12 11 10
14 14 H 1.08999 * 110.63039 * 297.81372 * 13 12 11
15 15 C 1.55431 * 110.69620 * 174.53909 * 13 12 11
16 16 C 1.54907 * 101.52553 * 205.97553 * 15 13 12
17 17 N 1.47842 * 104.89040 * 37.06459 * 16 15 13
18 18 C 1.46903 * 110.99935 * 213.57928 * 17 16 15
19 19 C 1.50699 * 109.47170 * 290.12998 * 18 17 16
20 20 C 1.38236 * 119.99866 * 269.72540 * 19 18 17
21 21 C 1.38236 * 119.99907 * 179.76813 * 20 19 18
22 22 C 1.38231 * 119.99824 * 0.48045 * 21 20 19
23 23 C 1.38237 * 120.00334 * 359.79255 * 22 21 20
24 24 C 1.38233 * 120.00088 * 89.99479 * 19 18 17
25 25 C 1.47442 * 108.56954 * 335.84889 * 17 16 15
26 26 C 1.46892 * 111.27172 * 63.10578 * 12 11 10
27 27 C 1.47072 * 120.88445 * 28.65192 * 9 7 2
28 28 H 0.96998 * 120.00236 * 0.02562 * 1 2 3
29 29 H 1.09000 * 109.62787 * 111.49353 * 10 9 7
30 30 H 1.09007 * 109.63039 * 350.91203 * 10 9 7
31 31 H 1.08998 * 109.49038 * 186.21037 * 11 10 9
32 32 H 1.08998 * 109.51238 * 66.14847 * 11 10 9
33 33 H 1.08996 * 111.10351 * 87.89981 * 15 13 12
34 34 H 1.09005 * 110.99875 * 323.99974 * 15 13 12
35 35 H 1.08996 * 110.37429 * 278.17860 * 16 15 13
36 36 H 1.08997 * 110.37136 * 155.94519 * 16 15 13
37 37 H 1.09005 * 109.46871 * 50.12826 * 18 17 16
38 38 H 1.08998 * 109.47362 * 170.12909 * 18 17 16
39 39 H 1.08003 * 119.99816 * 359.97438 * 20 19 18
40 40 H 1.07997 * 119.99872 * 180.25301 * 21 20 19
41 41 H 1.08000 * 120.00019 * 179.76811 * 22 21 20
42 42 H 1.07998 * 119.99851 * 179.97438 * 23 22 21
43 43 H 1.08004 * 120.00412 * 0.02562 * 24 19 18
44 44 H 1.08996 * 109.88689 * 120.39536 * 25 17 16
45 45 H 1.08998 * 109.88931 * 241.58480 * 25 17 16
46 46 H 1.09000 * 109.49387 * 56.84989 * 26 12 11
47 47 H 1.09005 * 109.49613 * 176.93338 * 26 12 11
48 48 H 1.09000 * 109.63291 * 248.50367 * 27 9 7
49 49 H 1.08997 * 109.62934 * 9.09022 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4976 2.0464 -1.4001
5 1 1.4475 2.6528 0.7000
6 1 3.5477 1.4403 0.7000
7 6 2.0102 -1.2021 0.0005
8 1 3.0639 -1.2172 0.2372
9 7 1.3590 -2.3688 -0.2990
10 6 1.8113 -3.6512 0.2615
11 6 1.9692 -4.6551 -0.8854
12 7 0.7177 -4.7191 -1.6517
13 6 0.7678 -5.7927 -2.6531
14 1 1.5613 -5.6062 -3.3767
15 6 -0.6055 -5.9444 -3.3651
16 6 -0.5643 -7.4295 -3.8038
17 7 0.1184 -8.1337 -2.6975
18 6 0.9216 -9.2549 -3.2033
19 6 0.0066 -10.3439 -3.7013
20 6 -0.4128 -11.3413 -2.8410
21 6 -1.2559 -12.3376 -3.2966
22 6 -1.6717 -12.3419 -4.6149
23 6 -1.2477 -11.3476 -5.4766
24 6 -0.4088 -10.3484 -5.0197
25 6 0.9610 -7.1645 -1.9731
26 6 0.4108 -3.4273 -2.2799
27 6 0.1890 -2.3730 -1.1901
28 1 -0.4850 0.8400 -0.0004
29 1 1.0726 -4.0209 0.9726
30 1 2.7696 -3.5141 0.7627
31 1 2.1970 -5.6401 -0.4778
32 1 2.7804 -4.3358 -1.5396
33 1 -0.6746 -5.2838 -4.2292
34 1 -1.4270 -5.7649 -2.6715
35 1 0.0025 -7.5364 -4.7287
36 1 -1.5755 -7.8154 -3.9324
37 1 1.5537 -8.9091 -4.0213
38 1 1.5473 -9.6449 -2.4005
39 1 -0.0844 -11.3404 -1.8121
40 1 -1.5869 -13.1145 -2.6234
41 1 -2.3274 -13.1223 -4.9718
42 1 -1.5722 -11.3512 -6.5067
43 1 -0.0773 -9.5718 -5.6931
44 1 0.6490 -7.1087 -0.9303
45 1 2.0072 -7.4645 -2.0339
46 1 1.2436 -3.1245 -2.9146
47 1 -0.4918 -3.5217 -2.8838
48 1 -0.7057 -2.6199 -0.6186
49 1 0.0745 -1.3909 -1.6488
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000374283515.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:31:56
Heat of formation + Delta-G solvation = 51.374571 kcal
Electronic energy + Delta-G solvation = -26299.622396 eV
Core-core repulsion = 22840.367768 eV
Total energy + Delta-G solvation = -3459.254627 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.201 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.89575 -39.92707 -38.61001 -36.03497 -33.91476 -32.75697 -31.86517 -31.71024
-30.76044 -29.49532 -27.61745 -26.16728 -24.58997 -24.34189 -23.41360 -22.30752
-21.49523 -21.38726 -20.75171 -18.81801 -17.73554 -17.34951 -16.92059 -16.70450
-16.16713 -15.98151 -15.61892 -15.43714 -15.36589 -15.20920 -14.82091 -14.67512
-14.41818 -14.21588 -14.07000 -13.69922 -13.38265 -13.21398 -13.18990 -12.87702
-12.72896 -12.63702 -12.55283 -12.28620 -12.16054 -12.01616 -11.89749 -11.84779
-11.72784 -11.65284 -11.40145 -11.35175 -10.60185 -9.75228 -9.67346 -9.34131
-9.18272 -8.66623 -7.88053 -5.35878 0.48023 0.57255 1.45904 1.46657
1.56149 2.49463 2.74378 2.95050 3.26195 3.27931 3.55127 3.67934
3.82559 3.92088 3.98881 4.12587 4.21859 4.25158 4.30588 4.33313
4.38297 4.39417 4.45679 4.56723 4.58825 4.63381 4.66597 4.67624
4.74633 4.82522 4.87948 4.91438 4.98155 5.05972 5.08550 5.17520
5.20298 5.21310 5.25145 5.35819 5.60396 5.61775 5.67283 5.68460
5.75102 5.98651 6.08187 6.18036 6.19914 6.30984 6.37797 7.12789
7.82536 8.38006 9.18611
Molecular weight = 315.20amu
Principal moments of inertia in cm(-1)
A = 0.041616 B = 0.002302 C = 0.002253
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 672.663742 B =12158.984479 C =12423.792417
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.052 4.052
3 Si 0.971 3.029
4 H -0.285 1.285
5 H -0.294 1.294
6 H -0.268 1.268
7 C -0.264 4.264
8 H 0.067 0.933
9 N -0.615 5.615
10 C 0.144 3.856
11 C 0.056 3.944
12 N -0.528 5.528
13 C 0.063 3.937
14 H 0.041 0.959
15 C -0.117 4.117
16 C 0.056 3.944
17 N -0.529 5.529
18 C 0.090 3.910
19 C -0.086 4.086
20 C -0.114 4.114
21 C -0.130 4.130
22 C -0.130 4.130
23 C -0.129 4.129
24 C -0.123 4.123
25 C 0.060 3.940
26 C 0.055 3.945
27 C 0.188 3.812
28 H 0.251 0.749
29 H 0.015 0.985
30 H 0.060 0.940
31 H 0.094 0.906
32 H 0.021 0.979
33 H 0.078 0.922
34 H 0.071 0.929
35 H 0.056 0.944
36 H 0.079 0.921
37 H 0.048 0.952
38 H 0.087 0.913
39 H 0.125 0.875
40 H 0.136 0.864
41 H 0.139 0.861
42 H 0.137 0.863
43 H 0.125 0.875
44 H 0.078 0.922
45 H 0.064 0.936
46 H 0.016 0.984
47 H 0.080 0.920
48 H -0.002 1.002
49 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.271 -24.498 -11.585 27.100
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.247 4.247
3 Si 0.799 3.201
4 H -0.211 1.211
5 H -0.221 1.221
6 H -0.193 1.193
7 C -0.394 4.394
8 H 0.084 0.916
9 N -0.339 5.339
10 C 0.019 3.981
11 C -0.073 4.073
12 N -0.253 5.253
13 C -0.046 4.046
14 H 0.059 0.941
15 C -0.156 4.156
16 C -0.072 4.072
17 N -0.253 5.253
18 C -0.038 4.038
19 C -0.087 4.087
20 C -0.132 4.132
21 C -0.148 4.148
22 C -0.148 4.148
23 C -0.147 4.147
24 C -0.142 4.142
25 C -0.068 4.068
26 C -0.075 4.075
27 C 0.062 3.938
28 H 0.060 0.940
29 H 0.033 0.967
30 H 0.079 0.921
31 H 0.112 0.888
32 H 0.039 0.961
33 H 0.096 0.904
34 H 0.089 0.911
35 H 0.074 0.926
36 H 0.097 0.903
37 H 0.066 0.934
38 H 0.106 0.894
39 H 0.143 0.857
40 H 0.154 0.846
41 H 0.157 0.843
42 H 0.155 0.845
43 H 0.143 0.857
44 H 0.096 0.904
45 H 0.083 0.917
46 H 0.034 0.966
47 H 0.098 0.902
48 H 0.016 0.984
49 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -1.077 -24.680 -10.883 26.994
hybrid contribution 1.372 1.820 -0.801 2.416
sum 0.296 -22.859 -11.684 25.674
Atomic orbital electron populations
1.70176 1.06665 1.25882 1.55470 1.25885 0.96170 1.01609 1.01074
0.85217 0.78031 0.79320 0.77560 1.21145 1.22052 1.19287 1.19519
0.92114 0.85603 1.42189 0.91572 1.44390 1.33739 1.02934 1.52848
1.21128 0.97459 0.85670 0.93862 1.22461 0.89468 0.99739 0.95662
1.61986 1.33981 1.04211 1.25154 1.22941 0.97347 0.91800 0.92561
0.94122 1.22775 0.96551 0.96385 0.99846 1.22955 0.99769 0.91935
0.92547 1.63616 1.28446 1.08734 1.24489 1.21276 0.93174 0.90069
0.99244 1.19820 0.98926 0.95917 0.94002 1.21217 0.97862 0.94464
0.99696 1.21423 0.97840 0.99026 0.96519 1.21456 1.00200 0.99262
0.93862 1.21398 0.97871 0.94759 1.00697 1.21235 0.98488 0.99092
0.95341 1.22746 0.96096 0.88896 0.99016 1.22540 0.99220 0.89478
0.96237 1.20584 0.87827 0.95837 0.89564 0.94040 0.96652 0.92142
0.88820 0.96111 0.90381 0.91072 0.92576 0.90312 0.93360 0.89418
0.85677 0.84565 0.84347 0.84491 0.85742 0.90417 0.91744 0.96608
0.90173 0.98434 0.92694
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -56.47 11.16 21.65 0.24 -56.23 16
2 C -0.05 -2.96 4.98 84.86 0.42 -2.54 16
3 Si 0.97 45.45 29.58 68.60 2.03 47.48 16
4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16
5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
7 C -0.26 -14.88 9.62 84.03 0.81 -14.07 16
8 H 0.07 3.62 7.87 -2.91 -0.02 3.60 16
9 N -0.61 -32.15 3.03 -698.13 -2.12 -34.27 16
10 C 0.14 6.22 6.69 86.35 0.58 6.80 16
11 C 0.06 1.94 5.44 86.38 0.47 2.41 16
12 N -0.53 -18.28 4.45 -862.55 -3.84 -22.12 16
13 C 0.06 1.70 2.65 46.20 0.12 1.82 16
14 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16
15 C -0.12 -2.86 5.42 32.08 0.17 -2.69 16
16 C 0.06 1.15 5.62 86.77 0.49 1.63 16
17 N -0.53 -11.48 5.15 -890.11 -4.58 -16.06 16
18 C 0.09 1.61 4.74 85.56 0.41 2.01 16
19 C -0.09 -1.56 5.11 -19.87 -0.10 -1.66 16
20 C -0.11 -2.00 9.70 22.27 0.22 -1.78 16
21 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16
22 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16
23 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16
24 C -0.12 -2.03 8.95 22.27 0.20 -1.83 16
25 C 0.06 1.42 5.31 86.65 0.46 1.88 16
26 C 0.05 2.15 5.47 86.39 0.47 2.62 16
27 C 0.19 9.47 5.39 86.35 0.47 9.94 16
28 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16
29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16
30 H 0.06 2.48 7.95 -2.38 -0.02 2.47 16
31 H 0.09 2.67 6.75 -2.39 -0.02 2.66 16
32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16
33 H 0.08 1.77 7.93 -2.39 -0.02 1.75 16
34 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16
35 H 0.06 1.01 7.04 -2.39 -0.02 1.00 16
36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
37 H 0.05 0.81 7.77 -2.38 -0.02 0.79 16
38 H 0.09 1.45 7.95 -2.39 -0.02 1.43 16
39 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16
40 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16
41 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16
42 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16
43 H 0.12 1.78 7.53 -2.91 -0.02 1.75 16
44 H 0.08 2.09 7.67 -2.39 -0.02 2.07 16
45 H 0.06 1.33 7.54 -2.39 -0.02 1.31 16
46 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16
47 H 0.08 2.83 6.81 -2.38 -0.02 2.82 16
48 H 0.00 -0.14 8.14 -2.39 -0.02 -0.15 16
49 H 0.05 3.09 6.20 -2.39 -0.01 3.07 16
Total: -1.00 -65.63 376.48 -1.52 -67.15
By element:
Atomic # 1 Polarization: 13.68 SS G_CDS: 0.90 Total: 14.58 kcal
Atomic # 6 Polarization: -6.38 SS G_CDS: 5.85 Total: -0.53 kcal
Atomic # 7 Polarization: -118.39 SS G_CDS: -10.30 Total: -128.68 kcal
Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal
Total: -65.63 -1.52 -67.15 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000374283515.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.522 kcal
(2) G-P(sol) polarization free energy of solvation -65.631 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.891 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.516 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.147 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.375 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds