Wall clock time and date at job start Tue Mar 31 2020 12:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99665 * 2 1 4 4 H 1.48501 * 109.46960 * 269.99568 * 3 2 1 5 5 H 1.48497 * 109.47468 * 29.99808 * 3 2 1 6 6 H 1.48504 * 109.47043 * 150.00139 * 3 2 1 7 7 C 1.38810 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99976 * 194.65270 * 7 2 1 9 9 N 1.36933 * 119.99990 * 14.65878 * 7 2 1 10 10 C 1.47084 * 120.87854 * 208.63422 * 9 7 2 11 11 C 1.53241 * 108.51913 * 231.20185 * 10 9 7 12 12 N 1.46893 * 109.33990 * 306.17162 * 11 10 9 13 13 C 1.46901 * 110.99771 * 187.25341 * 12 11 10 14 14 H 1.08999 * 110.63039 * 297.81372 * 13 12 11 15 15 C 1.55431 * 110.69620 * 174.53909 * 13 12 11 16 16 C 1.54907 * 101.52553 * 205.97553 * 15 13 12 17 17 N 1.47842 * 104.89040 * 37.06459 * 16 15 13 18 18 C 1.46903 * 110.99935 * 213.57928 * 17 16 15 19 19 C 1.50699 * 109.47170 * 290.12998 * 18 17 16 20 20 C 1.38236 * 119.99866 * 269.72540 * 19 18 17 21 21 C 1.38236 * 119.99907 * 179.76813 * 20 19 18 22 22 C 1.38231 * 119.99824 * 0.48045 * 21 20 19 23 23 C 1.38237 * 120.00334 * 359.79255 * 22 21 20 24 24 C 1.38233 * 120.00088 * 89.99479 * 19 18 17 25 25 C 1.47442 * 108.56954 * 335.84889 * 17 16 15 26 26 C 1.46892 * 111.27172 * 63.10578 * 12 11 10 27 27 C 1.47072 * 120.88445 * 28.65192 * 9 7 2 28 28 H 0.96998 * 120.00236 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.62787 * 111.49353 * 10 9 7 30 30 H 1.09007 * 109.63039 * 350.91203 * 10 9 7 31 31 H 1.08998 * 109.49038 * 186.21037 * 11 10 9 32 32 H 1.08998 * 109.51238 * 66.14847 * 11 10 9 33 33 H 1.08996 * 111.10351 * 87.89981 * 15 13 12 34 34 H 1.09005 * 110.99875 * 323.99974 * 15 13 12 35 35 H 1.08996 * 110.37429 * 278.17860 * 16 15 13 36 36 H 1.08997 * 110.37136 * 155.94519 * 16 15 13 37 37 H 1.09005 * 109.46871 * 50.12826 * 18 17 16 38 38 H 1.08998 * 109.47362 * 170.12909 * 18 17 16 39 39 H 1.08003 * 119.99816 * 359.97438 * 20 19 18 40 40 H 1.07997 * 119.99872 * 180.25301 * 21 20 19 41 41 H 1.08000 * 120.00019 * 179.76811 * 22 21 20 42 42 H 1.07998 * 119.99851 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.00412 * 0.02562 * 24 19 18 44 44 H 1.08996 * 109.88689 * 120.39536 * 25 17 16 45 45 H 1.08998 * 109.88931 * 241.58480 * 25 17 16 46 46 H 1.09000 * 109.49387 * 56.84989 * 26 12 11 47 47 H 1.09005 * 109.49613 * 176.93338 * 26 12 11 48 48 H 1.09000 * 109.63291 * 248.50367 * 27 9 7 49 49 H 1.08997 * 109.62934 * 9.09022 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0639 -1.2172 0.2372 9 7 1.3590 -2.3688 -0.2990 10 6 1.8113 -3.6512 0.2615 11 6 1.9692 -4.6551 -0.8854 12 7 0.7177 -4.7191 -1.6517 13 6 0.7678 -5.7927 -2.6531 14 1 1.5613 -5.6062 -3.3767 15 6 -0.6055 -5.9444 -3.3651 16 6 -0.5643 -7.4295 -3.8038 17 7 0.1184 -8.1337 -2.6975 18 6 0.9216 -9.2549 -3.2033 19 6 0.0066 -10.3439 -3.7013 20 6 -0.4128 -11.3413 -2.8410 21 6 -1.2559 -12.3376 -3.2966 22 6 -1.6717 -12.3419 -4.6149 23 6 -1.2477 -11.3476 -5.4766 24 6 -0.4088 -10.3484 -5.0197 25 6 0.9610 -7.1645 -1.9731 26 6 0.4108 -3.4273 -2.2799 27 6 0.1890 -2.3730 -1.1901 28 1 -0.4850 0.8400 -0.0004 29 1 1.0726 -4.0209 0.9726 30 1 2.7696 -3.5141 0.7627 31 1 2.1970 -5.6401 -0.4778 32 1 2.7804 -4.3358 -1.5396 33 1 -0.6746 -5.2838 -4.2292 34 1 -1.4270 -5.7649 -2.6715 35 1 0.0025 -7.5364 -4.7287 36 1 -1.5755 -7.8154 -3.9324 37 1 1.5537 -8.9091 -4.0213 38 1 1.5473 -9.6449 -2.4005 39 1 -0.0844 -11.3404 -1.8121 40 1 -1.5869 -13.1145 -2.6234 41 1 -2.3274 -13.1223 -4.9718 42 1 -1.5722 -11.3512 -6.5067 43 1 -0.0773 -9.5718 -5.6931 44 1 0.6490 -7.1087 -0.9303 45 1 2.0072 -7.4645 -2.0339 46 1 1.2436 -3.1245 -2.9146 47 1 -0.4918 -3.5217 -2.8838 48 1 -0.7057 -2.6199 -0.6186 49 1 0.0745 -1.3909 -1.6488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374283515.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:56 Heat of formation + Delta-G solvation = 51.374571 kcal Electronic energy + Delta-G solvation = -26299.622396 eV Core-core repulsion = 22840.367768 eV Total energy + Delta-G solvation = -3459.254627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.201 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.89575 -39.92707 -38.61001 -36.03497 -33.91476 -32.75697 -31.86517 -31.71024 -30.76044 -29.49532 -27.61745 -26.16728 -24.58997 -24.34189 -23.41360 -22.30752 -21.49523 -21.38726 -20.75171 -18.81801 -17.73554 -17.34951 -16.92059 -16.70450 -16.16713 -15.98151 -15.61892 -15.43714 -15.36589 -15.20920 -14.82091 -14.67512 -14.41818 -14.21588 -14.07000 -13.69922 -13.38265 -13.21398 -13.18990 -12.87702 -12.72896 -12.63702 -12.55283 -12.28620 -12.16054 -12.01616 -11.89749 -11.84779 -11.72784 -11.65284 -11.40145 -11.35175 -10.60185 -9.75228 -9.67346 -9.34131 -9.18272 -8.66623 -7.88053 -5.35878 0.48023 0.57255 1.45904 1.46657 1.56149 2.49463 2.74378 2.95050 3.26195 3.27931 3.55127 3.67934 3.82559 3.92088 3.98881 4.12587 4.21859 4.25158 4.30588 4.33313 4.38297 4.39417 4.45679 4.56723 4.58825 4.63381 4.66597 4.67624 4.74633 4.82522 4.87948 4.91438 4.98155 5.05972 5.08550 5.17520 5.20298 5.21310 5.25145 5.35819 5.60396 5.61775 5.67283 5.68460 5.75102 5.98651 6.08187 6.18036 6.19914 6.30984 6.37797 7.12789 7.82536 8.38006 9.18611 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.041616 B = 0.002302 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.663742 B =12158.984479 C =12423.792417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.615 5.615 10 C 0.144 3.856 11 C 0.056 3.944 12 N -0.528 5.528 13 C 0.063 3.937 14 H 0.041 0.959 15 C -0.117 4.117 16 C 0.056 3.944 17 N -0.529 5.529 18 C 0.090 3.910 19 C -0.086 4.086 20 C -0.114 4.114 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.123 4.123 25 C 0.060 3.940 26 C 0.055 3.945 27 C 0.188 3.812 28 H 0.251 0.749 29 H 0.015 0.985 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.021 0.979 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.125 0.875 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.016 0.984 47 H 0.080 0.920 48 H -0.002 1.002 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 -24.498 -11.585 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.394 4.394 8 H 0.084 0.916 9 N -0.339 5.339 10 C 0.019 3.981 11 C -0.073 4.073 12 N -0.253 5.253 13 C -0.046 4.046 14 H 0.059 0.941 15 C -0.156 4.156 16 C -0.072 4.072 17 N -0.253 5.253 18 C -0.038 4.038 19 C -0.087 4.087 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.068 4.068 26 C -0.075 4.075 27 C 0.062 3.938 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.039 0.961 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.143 0.857 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.143 0.857 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.034 0.966 47 H 0.098 0.902 48 H 0.016 0.984 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.077 -24.680 -10.883 26.994 hybrid contribution 1.372 1.820 -0.801 2.416 sum 0.296 -22.859 -11.684 25.674 Atomic orbital electron populations 1.70176 1.06665 1.25882 1.55470 1.25885 0.96170 1.01609 1.01074 0.85217 0.78031 0.79320 0.77560 1.21145 1.22052 1.19287 1.19519 0.92114 0.85603 1.42189 0.91572 1.44390 1.33739 1.02934 1.52848 1.21128 0.97459 0.85670 0.93862 1.22461 0.89468 0.99739 0.95662 1.61986 1.33981 1.04211 1.25154 1.22941 0.97347 0.91800 0.92561 0.94122 1.22775 0.96551 0.96385 0.99846 1.22955 0.99769 0.91935 0.92547 1.63616 1.28446 1.08734 1.24489 1.21276 0.93174 0.90069 0.99244 1.19820 0.98926 0.95917 0.94002 1.21217 0.97862 0.94464 0.99696 1.21423 0.97840 0.99026 0.96519 1.21456 1.00200 0.99262 0.93862 1.21398 0.97871 0.94759 1.00697 1.21235 0.98488 0.99092 0.95341 1.22746 0.96096 0.88896 0.99016 1.22540 0.99220 0.89478 0.96237 1.20584 0.87827 0.95837 0.89564 0.94040 0.96652 0.92142 0.88820 0.96111 0.90381 0.91072 0.92576 0.90312 0.93360 0.89418 0.85677 0.84565 0.84347 0.84491 0.85742 0.90417 0.91744 0.96608 0.90173 0.98434 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.47 11.16 21.65 0.24 -56.23 16 2 C -0.05 -2.96 4.98 84.86 0.42 -2.54 16 3 Si 0.97 45.45 29.58 68.60 2.03 47.48 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.26 -14.88 9.62 84.03 0.81 -14.07 16 8 H 0.07 3.62 7.87 -2.91 -0.02 3.60 16 9 N -0.61 -32.15 3.03 -698.13 -2.12 -34.27 16 10 C 0.14 6.22 6.69 86.35 0.58 6.80 16 11 C 0.06 1.94 5.44 86.38 0.47 2.41 16 12 N -0.53 -18.28 4.45 -862.55 -3.84 -22.12 16 13 C 0.06 1.70 2.65 46.20 0.12 1.82 16 14 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 15 C -0.12 -2.86 5.42 32.08 0.17 -2.69 16 16 C 0.06 1.15 5.62 86.77 0.49 1.63 16 17 N -0.53 -11.48 5.15 -890.11 -4.58 -16.06 16 18 C 0.09 1.61 4.74 85.56 0.41 2.01 16 19 C -0.09 -1.56 5.11 -19.87 -0.10 -1.66 16 20 C -0.11 -2.00 9.70 22.27 0.22 -1.78 16 21 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 22 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 23 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 24 C -0.12 -2.03 8.95 22.27 0.20 -1.83 16 25 C 0.06 1.42 5.31 86.65 0.46 1.88 16 26 C 0.05 2.15 5.47 86.39 0.47 2.62 16 27 C 0.19 9.47 5.39 86.35 0.47 9.94 16 28 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 2.48 7.95 -2.38 -0.02 2.47 16 31 H 0.09 2.67 6.75 -2.39 -0.02 2.66 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 1.77 7.93 -2.39 -0.02 1.75 16 34 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.06 1.01 7.04 -2.39 -0.02 1.00 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 0.81 7.77 -2.38 -0.02 0.79 16 38 H 0.09 1.45 7.95 -2.39 -0.02 1.43 16 39 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 42 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.12 1.78 7.53 -2.91 -0.02 1.75 16 44 H 0.08 2.09 7.67 -2.39 -0.02 2.07 16 45 H 0.06 1.33 7.54 -2.39 -0.02 1.31 16 46 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.08 2.83 6.81 -2.38 -0.02 2.82 16 48 H 0.00 -0.14 8.14 -2.39 -0.02 -0.15 16 49 H 0.05 3.09 6.20 -2.39 -0.01 3.07 16 Total: -1.00 -65.63 376.48 -1.52 -67.15 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.90 Total: 14.58 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.85 Total: -0.53 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -10.30 Total: -128.68 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -65.63 -1.52 -67.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374283515.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.522 kcal (2) G-P(sol) polarization free energy of solvation -65.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds