Wall clock time and date at job start Tue Mar 31 2020 11:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47468 * 2 1 4 4 N 1.46500 * 109.46815 * 240.00134 * 2 1 3 5 5 C 1.39672 * 120.00141 * 85.00246 * 4 2 1 6 6 C 1.39004 * 120.03802 * 359.97438 * 5 4 2 7 7 C 1.38148 * 120.05923 * 179.76529 * 6 5 4 8 8 C 1.38179 * 120.14437 * 0.51271 * 7 6 5 9 9 C 1.38912 * 120.07452 * 359.48671 * 8 7 6 10 10 O 1.35756 * 120.02809 * 180.23570 * 9 8 7 11 11 C 1.34832 * 117.00006 * 174.46226 * 10 9 8 12 12 H 1.08003 * 119.99483 * 5.05372 * 11 10 9 13 13 C 1.38646 * 120.00145 * 185.05664 * 11 10 9 14 14 N 1.31559 * 120.00046 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00139 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47144 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47131 * 119.99680 * 15 13 11 18 18 H 1.48504 * 109.47542 * 239.99912 * 15 13 11 19 19 C 1.38751 * 120.03840 * 179.97438 * 5 4 2 20 20 C 1.52996 * 109.46734 * 120.00407 * 2 1 3 21 21 H 1.09005 * 109.47418 * 60.00008 * 20 2 1 22 22 C 1.53003 * 109.47112 * 179.97438 * 20 2 1 23 23 C 1.52997 * 109.47313 * 119.99749 * 22 20 2 24 24 C 1.53002 * 109.47148 * 300.00253 * 23 22 20 25 25 C 1.53003 * 109.47029 * 60.00031 * 24 23 22 26 26 C 1.52995 * 109.47289 * 299.99354 * 20 2 1 27 27 C 1.53000 * 109.47234 * 180.02562 * 26 20 2 28 28 C 1.52990 * 109.47401 * 60.00347 * 27 26 20 29 29 H 1.08999 * 109.47468 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47017 * 300.00071 * 1 2 3 31 31 H 1.09003 * 109.47103 * 59.99739 * 1 2 3 32 32 H 0.97003 * 119.99745 * 265.00042 * 4 2 1 33 33 H 1.07998 * 119.97081 * 0.02562 * 6 5 4 34 34 H 1.07998 * 119.92694 * 180.25181 * 7 6 5 35 35 H 1.07999 * 119.95701 * 179.76255 * 8 7 6 36 36 H 0.96993 * 120.00346 * 180.02562 * 14 13 11 37 37 H 1.07995 * 120.07149 * 359.95632 * 19 5 4 38 38 H 1.09003 * 109.47691 * 240.00145 * 22 20 2 39 39 H 1.09007 * 109.46836 * 0.02562 * 22 20 2 40 40 H 1.09002 * 109.47561 * 180.02562 * 23 22 20 41 41 H 1.08997 * 109.47315 * 299.99696 * 24 23 22 42 42 H 1.09001 * 109.47354 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.47108 * 239.99987 * 25 24 23 44 44 H 1.09001 * 109.47321 * 120.00130 * 25 24 23 45 45 H 1.09006 * 109.47260 * 60.00597 * 26 20 2 46 46 H 1.09006 * 109.47343 * 180.02562 * 27 26 20 47 47 H 1.08999 * 109.47207 * 300.00046 * 27 26 20 48 48 H 1.09003 * 109.47474 * 240.00224 * 28 27 26 49 49 H 1.08997 * 109.47786 * 119.99662 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1517 0.0062 -2.3993 6 6 1.8209 1.3548 -2.4628 7 6 1.9573 2.0456 -3.6513 8 6 2.4126 1.3964 -4.7829 9 6 2.7448 0.0488 -4.7261 10 8 3.1965 -0.5870 -5.8373 11 6 3.6095 -1.8618 -5.6880 12 1 3.4959 -2.3580 -4.7354 13 6 4.1799 -2.5355 -6.7570 14 7 4.3178 -1.9312 -7.9174 15 14 4.7526 -4.3014 -6.5499 16 1 4.4877 -4.7477 -5.1586 17 1 4.0169 -5.1750 -7.4990 18 1 6.2091 -4.3853 -6.8272 19 6 2.6145 -0.6470 -3.5326 20 6 2.0399 -0.7213 1.2492 21 1 1.6765 -1.7490 1.2491 22 6 3.5699 -0.7219 1.2490 23 6 4.0804 -0.0008 2.4980 24 6 3.5710 1.4419 2.4979 25 6 2.0409 1.4425 2.4983 26 6 1.5300 -0.0001 2.4984 27 6 2.0404 -0.7211 3.7476 28 6 3.5703 -0.7207 3.7474 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2489 -1.6318 -1.1526 33 1 1.4609 1.8641 -1.5810 34 1 1.7035 3.0943 -3.6972 35 1 2.5144 1.9384 -5.7115 36 1 4.7165 -2.4026 -8.6655 37 1 2.8729 -1.6945 -3.4859 38 1 3.9330 -1.7497 1.2490 39 1 3.9333 -0.2079 0.3590 40 1 5.1705 -0.0008 2.4976 41 1 3.9343 1.9556 1.6079 42 1 3.9343 1.9556 3.3880 43 1 1.6776 1.9564 1.6083 44 1 1.6779 1.9566 3.3883 45 1 0.4400 -0.0001 2.4985 46 1 1.6768 -0.2075 4.6377 47 1 1.6774 -1.7489 3.7478 48 1 3.9340 -1.7483 3.7474 49 1 3.9338 -0.2067 4.6372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381659069.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:49 Heat of formation + Delta-G solvation = -25.745269 kcal Electronic energy + Delta-G solvation = -26907.100745 eV Core-core repulsion = 23412.209199 eV Total energy + Delta-G solvation = -3494.891546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.98431 -38.96492 -37.17288 -35.28350 -32.42323 -32.04389 -31.27675 -31.02989 -29.40884 -28.48271 -27.60704 -25.20691 -23.54183 -22.77073 -22.33090 -21.78257 -21.07267 -19.98487 -17.81479 -17.52167 -16.69579 -16.53953 -16.12058 -15.82328 -15.11239 -14.96477 -14.38850 -14.23307 -13.72364 -13.63844 -13.44188 -13.20758 -12.81327 -12.78586 -12.40465 -12.27906 -12.26200 -12.21972 -12.15821 -12.07946 -11.85718 -11.61135 -11.54564 -11.34863 -11.11473 -10.87212 -10.70357 -10.60593 -10.47068 -10.32760 -9.96648 -9.93773 -9.85471 -9.33407 -9.31433 -8.71942 -7.29554 -6.69048 -6.37345 -3.96322 2.44177 2.63425 3.16098 3.17124 3.22245 3.79406 4.02636 4.32909 4.39862 4.47989 4.75603 4.89124 5.05281 5.08675 5.12242 5.14772 5.15565 5.19177 5.20951 5.23255 5.38483 5.40488 5.42096 5.45806 5.57522 5.66123 5.76081 5.79057 5.80196 5.86189 5.97681 5.99657 6.04288 6.07519 6.16162 6.18420 6.21629 6.22711 6.31253 6.34343 6.41327 6.47118 6.72216 6.73780 7.11285 7.20849 7.45114 7.55049 7.74360 8.09571 8.11055 8.29688 9.09134 9.82674 10.81310 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.003268 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.471016 B = 8566.816093 C = 9500.112143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.158 3.842 3 H 0.081 0.919 4 N -0.747 5.747 5 C 0.253 3.747 6 C -0.280 4.280 7 C -0.041 4.041 8 C -0.239 4.239 9 C 0.190 3.810 10 O -0.180 6.180 11 C -0.387 4.387 12 H 0.091 0.909 13 C 0.037 3.963 14 N -0.865 5.865 15 Si 0.939 3.061 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.303 4.303 20 C -0.086 4.086 21 H 0.070 0.930 22 C -0.111 4.111 23 C -0.086 4.086 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.079 4.079 27 C -0.112 4.112 28 C -0.113 4.113 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.392 0.608 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.268 0.732 37 H 0.123 0.877 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 3.537 23.274 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.052 3.948 3 H 0.098 0.902 4 N -0.378 5.378 5 C 0.152 3.848 6 C -0.303 4.303 7 C -0.060 4.060 8 C -0.259 4.259 9 C 0.136 3.864 10 O -0.083 6.083 11 C -0.464 4.464 12 H 0.108 0.892 13 C -0.166 4.166 14 N -0.501 5.501 15 Si 0.764 3.236 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.327 4.327 20 C -0.105 4.105 21 H 0.088 0.912 22 C -0.148 4.148 23 C -0.105 4.105 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.097 4.097 27 C -0.150 4.150 28 C -0.151 4.151 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.226 0.774 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.227 3.678 22.929 23.604 hybrid contribution 0.353 -1.356 0.132 1.408 sum -3.875 2.322 23.062 23.500 Atomic orbital electron populations 1.22368 0.96716 1.02013 1.01872 1.20894 0.92948 0.96967 0.83994 0.90160 1.44621 1.74302 1.11855 1.06980 1.17448 0.91593 0.90874 0.84882 1.20085 1.18206 0.93465 0.98502 1.20372 0.95844 0.97838 0.91902 1.20021 1.13813 0.92826 0.99260 1.19068 0.90009 0.91199 0.86158 1.83987 1.69583 1.26893 1.27874 1.21339 1.39928 0.85959 0.99130 0.89179 1.25259 0.96718 1.00025 0.94613 1.70050 1.41642 1.37092 1.01318 0.85679 0.78550 0.80738 0.78617 1.19255 1.20239 1.20230 1.20503 1.18247 1.01214 0.92765 1.21372 0.95919 0.99423 0.93773 0.91188 1.21619 0.94677 1.00499 0.98018 1.21023 0.99414 0.95060 0.94960 1.21526 0.95680 0.96219 1.01674 1.21602 0.95855 0.96136 1.01803 1.21056 0.99685 0.94976 0.94025 1.21523 0.95781 1.00248 0.97412 1.21531 0.95704 1.00262 0.97568 0.92785 0.92237 0.92016 0.77405 0.87874 0.87365 0.87051 0.92224 0.85931 0.92236 0.90806 0.91439 0.91867 0.92347 0.91571 0.92238 0.90805 0.92152 0.92184 0.92240 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.07 37.16 0.34 -1.56 16 2 C 0.16 1.84 1.27 -67.93 -0.09 1.75 16 3 H 0.08 1.00 4.77 -51.93 -0.25 0.75 16 4 N -0.75 -10.96 4.54 -52.19 -0.24 -11.19 16 5 C 0.25 4.73 6.63 -83.81 -0.56 4.17 16 6 C -0.28 -5.00 8.85 -39.33 -0.35 -5.35 16 7 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 8 C -0.24 -5.28 9.99 -39.35 -0.39 -5.68 16 9 C 0.19 4.76 6.64 -39.14 -0.26 4.50 16 10 O -0.18 -5.29 9.76 0.02 0.00 -5.29 16 11 C -0.39 -11.06 9.49 30.88 0.29 -10.77 16 12 H 0.09 2.40 5.20 -52.48 -0.27 2.13 16 13 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 14 N -0.87 -25.89 13.67 55.48 0.76 -25.13 16 15 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 19 C -0.30 -6.77 9.01 -39.20 -0.35 -7.12 16 20 C -0.09 -0.84 1.86 -90.62 -0.17 -1.01 16 21 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 22 C -0.11 -1.15 5.11 -26.73 -0.14 -1.29 16 23 C -0.09 -0.78 3.19 -90.64 -0.29 -1.07 16 24 C -0.11 -1.01 5.71 -26.73 -0.15 -1.16 16 25 C -0.12 -0.98 5.36 -26.71 -0.14 -1.12 16 26 C -0.08 -0.66 2.37 -90.60 -0.22 -0.87 16 27 C -0.11 -0.86 5.71 -26.74 -0.15 -1.02 16 28 C -0.11 -0.91 5.70 -26.76 -0.15 -1.06 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 31 H 0.06 0.79 7.70 -51.93 -0.40 0.39 16 32 H 0.39 5.52 8.61 -40.82 -0.35 5.16 16 33 H 0.10 1.60 6.10 -52.49 -0.32 1.28 16 34 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.11 2.41 8.06 -52.49 -0.42 1.98 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.12 2.77 5.64 -52.49 -0.30 2.47 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.93 7.26 -51.92 -0.38 0.55 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -30.58 368.89 -10.11 -40.69 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.90 Total: 8.30 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: -3.27 Total: -28.86 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.52 Total: -36.32 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.58 -10.11 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381659069.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.945 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds