Wall clock time and date at job start Tue Mar 31 2020 11:23:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08999 * 109.47468 * 2 1
4 4 N 1.46500 * 109.46815 * 240.00134 * 2 1 3
5 5 C 1.39672 * 120.00141 * 85.00246 * 4 2 1
6 6 C 1.39004 * 120.03802 * 359.97438 * 5 4 2
7 7 C 1.38148 * 120.05923 * 179.76529 * 6 5 4
8 8 C 1.38179 * 120.14437 * 0.51271 * 7 6 5
9 9 C 1.38912 * 120.07452 * 359.48671 * 8 7 6
10 10 O 1.35756 * 120.02809 * 180.23570 * 9 8 7
11 11 C 1.34832 * 117.00006 * 174.46226 * 10 9 8
12 12 H 1.08003 * 119.99483 * 5.05372 * 11 10 9
13 13 C 1.38646 * 120.00145 * 185.05664 * 11 10 9
14 14 N 1.31559 * 120.00046 * 359.97438 * 13 11 10
15 15 Si 1.86794 * 120.00139 * 179.97438 * 13 11 10
16 16 H 1.48497 * 109.47144 * 359.97438 * 15 13 11
17 17 H 1.48504 * 109.47131 * 119.99680 * 15 13 11
18 18 H 1.48504 * 109.47542 * 239.99912 * 15 13 11
19 19 C 1.38751 * 120.03840 * 179.97438 * 5 4 2
20 20 C 1.52996 * 109.46734 * 120.00407 * 2 1 3
21 21 H 1.09005 * 109.47418 * 60.00008 * 20 2 1
22 22 C 1.53003 * 109.47112 * 179.97438 * 20 2 1
23 23 C 1.52997 * 109.47313 * 119.99749 * 22 20 2
24 24 C 1.53002 * 109.47148 * 300.00253 * 23 22 20
25 25 C 1.53003 * 109.47029 * 60.00031 * 24 23 22
26 26 C 1.52995 * 109.47289 * 299.99354 * 20 2 1
27 27 C 1.53000 * 109.47234 * 180.02562 * 26 20 2
28 28 C 1.52990 * 109.47401 * 60.00347 * 27 26 20
29 29 H 1.08999 * 109.47468 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47017 * 300.00071 * 1 2 3
31 31 H 1.09003 * 109.47103 * 59.99739 * 1 2 3
32 32 H 0.97003 * 119.99745 * 265.00042 * 4 2 1
33 33 H 1.07998 * 119.97081 * 0.02562 * 6 5 4
34 34 H 1.07998 * 119.92694 * 180.25181 * 7 6 5
35 35 H 1.07999 * 119.95701 * 179.76255 * 8 7 6
36 36 H 0.96993 * 120.00346 * 180.02562 * 14 13 11
37 37 H 1.07995 * 120.07149 * 359.95632 * 19 5 4
38 38 H 1.09003 * 109.47691 * 240.00145 * 22 20 2
39 39 H 1.09007 * 109.46836 * 0.02562 * 22 20 2
40 40 H 1.09002 * 109.47561 * 180.02562 * 23 22 20
41 41 H 1.08997 * 109.47315 * 299.99696 * 24 23 22
42 42 H 1.09001 * 109.47354 * 179.97438 * 24 23 22
43 43 H 1.09003 * 109.47108 * 239.99987 * 25 24 23
44 44 H 1.09001 * 109.47321 * 120.00130 * 25 24 23
45 45 H 1.09006 * 109.47260 * 60.00597 * 26 20 2
46 46 H 1.09006 * 109.47343 * 180.02562 * 27 26 20
47 47 H 1.08999 * 109.47207 * 300.00046 * 27 26 20
48 48 H 1.09003 * 109.47474 * 240.00224 * 28 27 26
49 49 H 1.08997 * 109.47786 * 119.99662 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6906 -1.1962
5 6 2.1517 0.0062 -2.3993
6 6 1.8209 1.3548 -2.4628
7 6 1.9573 2.0456 -3.6513
8 6 2.4126 1.3964 -4.7829
9 6 2.7448 0.0488 -4.7261
10 8 3.1965 -0.5870 -5.8373
11 6 3.6095 -1.8618 -5.6880
12 1 3.4959 -2.3580 -4.7354
13 6 4.1799 -2.5355 -6.7570
14 7 4.3178 -1.9312 -7.9174
15 14 4.7526 -4.3014 -6.5499
16 1 4.4877 -4.7477 -5.1586
17 1 4.0169 -5.1750 -7.4990
18 1 6.2091 -4.3853 -6.8272
19 6 2.6145 -0.6470 -3.5326
20 6 2.0399 -0.7213 1.2492
21 1 1.6765 -1.7490 1.2491
22 6 3.5699 -0.7219 1.2490
23 6 4.0804 -0.0008 2.4980
24 6 3.5710 1.4419 2.4979
25 6 2.0409 1.4425 2.4983
26 6 1.5300 -0.0001 2.4984
27 6 2.0404 -0.7211 3.7476
28 6 3.5703 -0.7207 3.7474
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 2.2489 -1.6318 -1.1526
33 1 1.4609 1.8641 -1.5810
34 1 1.7035 3.0943 -3.6972
35 1 2.5144 1.9384 -5.7115
36 1 4.7165 -2.4026 -8.6655
37 1 2.8729 -1.6945 -3.4859
38 1 3.9330 -1.7497 1.2490
39 1 3.9333 -0.2079 0.3590
40 1 5.1705 -0.0008 2.4976
41 1 3.9343 1.9556 1.6079
42 1 3.9343 1.9556 3.3880
43 1 1.6776 1.9564 1.6083
44 1 1.6779 1.9566 3.3883
45 1 0.4400 -0.0001 2.4985
46 1 1.6768 -0.2075 4.6377
47 1 1.6774 -1.7489 3.7478
48 1 3.9340 -1.7483 3.7474
49 1 3.9338 -0.2067 4.6372
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000381659069.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:23:47
Heat of formation + Delta-G solvation = -41.769255 kcal
Electronic energy + Delta-G solvation = -26907.795597 eV
Core-core repulsion = 23412.209199 eV
Total energy + Delta-G solvation = -3495.586398 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.77632 -40.67117 -38.76399 -36.65014 -34.26532 -33.36736 -32.11395 -31.68490
-30.72474 -29.81541 -29.02638 -27.23503 -24.49627 -23.53168 -23.36871 -23.08898
-22.31328 -21.26221 -19.66410 -19.09783 -17.58657 -17.42863 -17.15975 -16.84893
-16.66985 -16.25609 -15.93875 -15.67413 -15.47092 -15.04290 -14.69838 -14.43188
-14.18934 -13.95959 -13.64551 -13.50222 -13.22759 -13.03537 -12.93239 -12.90302
-12.85355 -12.81448 -12.73165 -12.57696 -12.43029 -12.23439 -12.12314 -12.07258
-11.77333 -11.34622 -11.26363 -10.96854 -10.69114 -10.63542 -10.60189 -10.52069
-9.08928 -8.45224 -8.18518 -6.13338 0.78338 0.94632 1.33462 1.43216
1.51889 2.18175 2.56787 2.90055 3.28351 3.54985 3.60884 3.70346
3.75950 4.07237 4.20290 4.24952 4.32019 4.37399 4.44085 4.46019
4.47832 4.54207 4.59079 4.59935 4.61800 4.67036 4.68846 4.74743
4.77123 4.87876 4.93009 5.05720 5.14111 5.16425 5.17756 5.19587
5.23884 5.26212 5.35240 5.41303 5.46648 5.49666 5.51985 5.54463
5.56609 5.65755 5.77262 5.82569 6.06453 6.14295 6.66308 6.91253
7.00492 7.84364 8.78816
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.016481 B = 0.003268 C = 0.002947
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1698.471016 B = 8566.816093 C = 9500.112143
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.156 3.844
3 H 0.079 0.921
4 N -0.737 5.737
5 C 0.263 3.737
6 C -0.264 4.264
7 C -0.027 4.027
8 C -0.264 4.264
9 C 0.154 3.846
10 O -0.234 6.234
11 C -0.409 4.409
12 H 0.098 0.902
13 C -0.025 4.025
14 N -0.923 5.923
15 Si 1.018 2.982
16 H -0.253 1.253
17 H -0.267 1.267
18 H -0.268 1.268
19 C -0.318 4.318
20 C -0.078 4.078
21 H 0.072 0.928
22 C -0.109 4.109
23 C -0.087 4.087
24 C -0.114 4.114
25 C -0.116 4.116
26 C -0.075 4.075
27 C -0.110 4.110
28 C -0.111 4.111
29 H 0.053 0.947
30 H 0.085 0.915
31 H 0.045 0.955
32 H 0.395 0.605
33 H 0.139 0.861
34 H 0.150 0.850
35 H 0.104 0.896
36 H 0.272 0.728
37 H 0.111 0.889
38 H 0.056 0.944
39 H 0.048 0.952
40 H 0.062 0.938
41 H 0.048 0.952
42 H 0.068 0.932
43 H 0.062 0.938
44 H 0.073 0.927
45 H 0.085 0.915
46 H 0.073 0.927
47 H 0.062 0.938
48 H 0.057 0.943
49 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.505 3.705 27.299 28.094
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.052 3.948
3 H 0.097 0.903
4 N -0.365 5.365
5 C 0.159 3.841
6 C -0.286 4.286
7 C -0.045 4.045
8 C -0.285 4.285
9 C 0.102 3.898
10 O -0.140 6.140
11 C -0.485 4.485
12 H 0.115 0.885
13 C -0.222 4.222
14 N -0.561 5.561
15 Si 0.838 3.162
16 H -0.177 1.177
17 H -0.192 1.192
18 H -0.193 1.193
19 C -0.342 4.342
20 C -0.098 4.098
21 H 0.091 0.909
22 C -0.147 4.147
23 C -0.105 4.105
24 C -0.151 4.151
25 C -0.154 4.154
26 C -0.094 4.094
27 C -0.148 4.148
28 C -0.149 4.149
29 H 0.072 0.928
30 H 0.104 0.896
31 H 0.064 0.936
32 H 0.230 0.770
33 H 0.157 0.843
34 H 0.168 0.832
35 H 0.123 0.877
36 H 0.081 0.919
37 H 0.129 0.871
38 H 0.074 0.926
39 H 0.067 0.933
40 H 0.080 0.920
41 H 0.067 0.933
42 H 0.087 0.913
43 H 0.080 0.920
44 H 0.092 0.908
45 H 0.103 0.897
46 H 0.091 0.909
47 H 0.081 0.919
48 H 0.076 0.924
49 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -5.482 3.864 27.039 27.858
hybrid contribution 0.636 -1.214 -0.846 1.610
sum -4.847 2.650 26.193 26.769
Atomic orbital electron populations
1.22327 0.95537 1.02249 1.02405 1.21116 0.93672 0.96763 0.83274
0.90316 1.44799 1.73029 1.12075 1.06620 1.17511 0.90035 0.91448
0.85149 1.20529 1.15824 0.92918 0.99370 1.20813 0.93480 0.99640
0.90589 1.20235 1.15528 0.92095 1.00659 1.19629 0.91189 0.92545
0.86392 1.83947 1.72161 1.27578 1.30316 1.21814 1.40424 0.86397
0.99872 0.88453 1.26574 0.96497 1.05164 0.93924 1.70196 1.43822
1.39575 1.02536 0.84539 0.78185 0.74148 0.79361 1.17664 1.19244
1.19305 1.20501 1.19470 1.00841 0.93419 1.21320 0.95234 0.99591
0.93606 0.90923 1.21577 0.95316 1.00143 0.97687 1.21021 0.99192
0.95398 0.94912 1.21527 0.96327 0.95789 1.01506 1.21617 0.95204
0.96203 1.02339 1.21062 1.00269 0.94759 0.93293 1.21526 0.95251
1.00547 0.97473 1.21519 0.96166 1.00103 0.97098 0.92771 0.89605
0.93562 0.77047 0.84340 0.83224 0.87733 0.91918 0.87122 0.92566
0.93348 0.91994 0.93270 0.91343 0.91972 0.90785 0.89671 0.90854
0.91887 0.92375 0.91432
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.11 9.07 71.98 0.65 -2.46 16
2 C 0.16 3.20 1.27 44.99 0.06 3.26 16
3 H 0.08 1.70 4.77 -2.39 -0.01 1.68 16
4 N -0.74 -20.46 4.54 -319.02 -1.45 -21.91 16
5 C 0.26 9.56 6.63 38.20 0.25 9.81 16
6 C -0.26 -8.74 8.85 22.43 0.20 -8.54 16
7 C -0.03 -0.95 10.03 22.23 0.22 -0.72 16
8 C -0.26 -12.02 9.99 22.42 0.22 -11.80 16
9 C 0.15 8.09 6.64 22.56 0.15 8.24 16
10 O -0.23 -14.70 9.76 -22.83 -0.22 -14.92 16
11 C -0.41 -24.72 9.49 67.92 0.64 -24.07 16
12 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16
13 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16
14 N -0.92 -58.20 13.67 21.61 0.30 -57.90 16
15 Si 1.02 44.18 29.55 68.60 2.03 46.20 16
16 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16
17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16
18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16
19 C -0.32 -14.64 9.01 22.52 0.20 -14.43 16
20 C -0.08 -1.32 1.86 -10.80 -0.02 -1.34 16
21 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16
22 C -0.11 -2.12 5.11 30.59 0.16 -1.96 16
23 C -0.09 -1.41 3.19 -10.81 -0.03 -1.45 16
24 C -0.11 -1.74 5.71 30.60 0.17 -1.57 16
25 C -0.12 -1.54 5.36 30.61 0.16 -1.37 16
26 C -0.08 -0.97 2.37 -10.78 -0.03 -1.00 16
27 C -0.11 -1.29 5.71 30.59 0.17 -1.12 16
28 C -0.11 -1.47 5.70 30.58 0.17 -1.30 16
29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16
30 H 0.09 1.18 6.43 -2.39 -0.02 1.16 16
31 H 0.05 1.02 7.70 -2.39 -0.02 1.00 16
32 H 0.40 10.70 8.61 -92.71 -0.80 9.91 16
33 H 0.14 3.67 6.10 -2.91 -0.02 3.66 16
34 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16
35 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16
36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16
37 H 0.11 5.24 5.64 -2.91 -0.02 5.22 16
38 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16
39 H 0.05 1.18 7.26 -2.38 -0.02 1.16 16
40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16
42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
43 H 0.06 0.88 6.43 -2.39 -0.02 0.87 16
44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16
45 H 0.09 0.96 6.43 -2.38 -0.02 0.95 16
46 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16
47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
48 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
49 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
Total: -1.00 -71.70 368.89 4.64 -67.07
By element:
Atomic # 1 Polarization: 34.11 SS G_CDS: 0.15 Total: 34.26 kcal
Atomic # 6 Polarization: -56.64 SS G_CDS: 3.84 Total: -52.80 kcal
Atomic # 7 Polarization: -78.65 SS G_CDS: -1.15 Total: -79.81 kcal
Atomic # 8 Polarization: -14.70 SS G_CDS: -0.22 Total: -14.92 kcal
Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal
Total: -71.70 4.64 -67.07 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000381659069.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.296 kcal
(2) G-P(sol) polarization free energy of solvation -71.701 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.404 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.065 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.769 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds