Wall clock time and date at job start Tue Mar 31 2020 11:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47468 * 2 1 4 4 N 1.46500 * 109.46815 * 240.00134 * 2 1 3 5 5 C 1.39672 * 120.00141 * 85.00246 * 4 2 1 6 6 C 1.39004 * 120.03802 * 359.97438 * 5 4 2 7 7 C 1.38148 * 120.05923 * 179.76529 * 6 5 4 8 8 C 1.38179 * 120.14437 * 0.51271 * 7 6 5 9 9 C 1.38912 * 120.07452 * 359.48671 * 8 7 6 10 10 O 1.35756 * 120.02809 * 180.23570 * 9 8 7 11 11 C 1.34832 * 117.00006 * 174.46226 * 10 9 8 12 12 H 1.08003 * 119.99483 * 5.05372 * 11 10 9 13 13 C 1.38646 * 120.00145 * 185.05664 * 11 10 9 14 14 N 1.31559 * 120.00046 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00139 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47144 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47131 * 119.99680 * 15 13 11 18 18 H 1.48504 * 109.47542 * 239.99912 * 15 13 11 19 19 C 1.38751 * 120.03840 * 179.97438 * 5 4 2 20 20 C 1.52996 * 109.46734 * 120.00407 * 2 1 3 21 21 H 1.09005 * 109.47418 * 60.00008 * 20 2 1 22 22 C 1.53003 * 109.47112 * 179.97438 * 20 2 1 23 23 C 1.52997 * 109.47313 * 119.99749 * 22 20 2 24 24 C 1.53002 * 109.47148 * 300.00253 * 23 22 20 25 25 C 1.53003 * 109.47029 * 60.00031 * 24 23 22 26 26 C 1.52995 * 109.47289 * 299.99354 * 20 2 1 27 27 C 1.53000 * 109.47234 * 180.02562 * 26 20 2 28 28 C 1.52990 * 109.47401 * 60.00347 * 27 26 20 29 29 H 1.08999 * 109.47468 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47017 * 300.00071 * 1 2 3 31 31 H 1.09003 * 109.47103 * 59.99739 * 1 2 3 32 32 H 0.97003 * 119.99745 * 265.00042 * 4 2 1 33 33 H 1.07998 * 119.97081 * 0.02562 * 6 5 4 34 34 H 1.07998 * 119.92694 * 180.25181 * 7 6 5 35 35 H 1.07999 * 119.95701 * 179.76255 * 8 7 6 36 36 H 0.96993 * 120.00346 * 180.02562 * 14 13 11 37 37 H 1.07995 * 120.07149 * 359.95632 * 19 5 4 38 38 H 1.09003 * 109.47691 * 240.00145 * 22 20 2 39 39 H 1.09007 * 109.46836 * 0.02562 * 22 20 2 40 40 H 1.09002 * 109.47561 * 180.02562 * 23 22 20 41 41 H 1.08997 * 109.47315 * 299.99696 * 24 23 22 42 42 H 1.09001 * 109.47354 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.47108 * 239.99987 * 25 24 23 44 44 H 1.09001 * 109.47321 * 120.00130 * 25 24 23 45 45 H 1.09006 * 109.47260 * 60.00597 * 26 20 2 46 46 H 1.09006 * 109.47343 * 180.02562 * 27 26 20 47 47 H 1.08999 * 109.47207 * 300.00046 * 27 26 20 48 48 H 1.09003 * 109.47474 * 240.00224 * 28 27 26 49 49 H 1.08997 * 109.47786 * 119.99662 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1517 0.0062 -2.3993 6 6 1.8209 1.3548 -2.4628 7 6 1.9573 2.0456 -3.6513 8 6 2.4126 1.3964 -4.7829 9 6 2.7448 0.0488 -4.7261 10 8 3.1965 -0.5870 -5.8373 11 6 3.6095 -1.8618 -5.6880 12 1 3.4959 -2.3580 -4.7354 13 6 4.1799 -2.5355 -6.7570 14 7 4.3178 -1.9312 -7.9174 15 14 4.7526 -4.3014 -6.5499 16 1 4.4877 -4.7477 -5.1586 17 1 4.0169 -5.1750 -7.4990 18 1 6.2091 -4.3853 -6.8272 19 6 2.6145 -0.6470 -3.5326 20 6 2.0399 -0.7213 1.2492 21 1 1.6765 -1.7490 1.2491 22 6 3.5699 -0.7219 1.2490 23 6 4.0804 -0.0008 2.4980 24 6 3.5710 1.4419 2.4979 25 6 2.0409 1.4425 2.4983 26 6 1.5300 -0.0001 2.4984 27 6 2.0404 -0.7211 3.7476 28 6 3.5703 -0.7207 3.7474 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2489 -1.6318 -1.1526 33 1 1.4609 1.8641 -1.5810 34 1 1.7035 3.0943 -3.6972 35 1 2.5144 1.9384 -5.7115 36 1 4.7165 -2.4026 -8.6655 37 1 2.8729 -1.6945 -3.4859 38 1 3.9330 -1.7497 1.2490 39 1 3.9333 -0.2079 0.3590 40 1 5.1705 -0.0008 2.4976 41 1 3.9343 1.9556 1.6079 42 1 3.9343 1.9556 3.3880 43 1 1.6776 1.9564 1.6083 44 1 1.6779 1.9566 3.3883 45 1 0.4400 -0.0001 2.4985 46 1 1.6768 -0.2075 4.6377 47 1 1.6774 -1.7489 3.7478 48 1 3.9340 -1.7483 3.7474 49 1 3.9338 -0.2067 4.6372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381659069.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:47 Heat of formation + Delta-G solvation = -41.769255 kcal Electronic energy + Delta-G solvation = -26907.795597 eV Core-core repulsion = 23412.209199 eV Total energy + Delta-G solvation = -3495.586398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.77632 -40.67117 -38.76399 -36.65014 -34.26532 -33.36736 -32.11395 -31.68490 -30.72474 -29.81541 -29.02638 -27.23503 -24.49627 -23.53168 -23.36871 -23.08898 -22.31328 -21.26221 -19.66410 -19.09783 -17.58657 -17.42863 -17.15975 -16.84893 -16.66985 -16.25609 -15.93875 -15.67413 -15.47092 -15.04290 -14.69838 -14.43188 -14.18934 -13.95959 -13.64551 -13.50222 -13.22759 -13.03537 -12.93239 -12.90302 -12.85355 -12.81448 -12.73165 -12.57696 -12.43029 -12.23439 -12.12314 -12.07258 -11.77333 -11.34622 -11.26363 -10.96854 -10.69114 -10.63542 -10.60189 -10.52069 -9.08928 -8.45224 -8.18518 -6.13338 0.78338 0.94632 1.33462 1.43216 1.51889 2.18175 2.56787 2.90055 3.28351 3.54985 3.60884 3.70346 3.75950 4.07237 4.20290 4.24952 4.32019 4.37399 4.44085 4.46019 4.47832 4.54207 4.59079 4.59935 4.61800 4.67036 4.68846 4.74743 4.77123 4.87876 4.93009 5.05720 5.14111 5.16425 5.17756 5.19587 5.23884 5.26212 5.35240 5.41303 5.46648 5.49666 5.51985 5.54463 5.56609 5.65755 5.77262 5.82569 6.06453 6.14295 6.66308 6.91253 7.00492 7.84364 8.78816 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.003268 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.471016 B = 8566.816093 C = 9500.112143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.156 3.844 3 H 0.079 0.921 4 N -0.737 5.737 5 C 0.263 3.737 6 C -0.264 4.264 7 C -0.027 4.027 8 C -0.264 4.264 9 C 0.154 3.846 10 O -0.234 6.234 11 C -0.409 4.409 12 H 0.098 0.902 13 C -0.025 4.025 14 N -0.923 5.923 15 Si 1.018 2.982 16 H -0.253 1.253 17 H -0.267 1.267 18 H -0.268 1.268 19 C -0.318 4.318 20 C -0.078 4.078 21 H 0.072 0.928 22 C -0.109 4.109 23 C -0.087 4.087 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.075 4.075 27 C -0.110 4.110 28 C -0.111 4.111 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.395 0.605 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.104 0.896 36 H 0.272 0.728 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 3.705 27.299 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.052 3.948 3 H 0.097 0.903 4 N -0.365 5.365 5 C 0.159 3.841 6 C -0.286 4.286 7 C -0.045 4.045 8 C -0.285 4.285 9 C 0.102 3.898 10 O -0.140 6.140 11 C -0.485 4.485 12 H 0.115 0.885 13 C -0.222 4.222 14 N -0.561 5.561 15 Si 0.838 3.162 16 H -0.177 1.177 17 H -0.192 1.192 18 H -0.193 1.193 19 C -0.342 4.342 20 C -0.098 4.098 21 H 0.091 0.909 22 C -0.147 4.147 23 C -0.105 4.105 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.094 4.094 27 C -0.148 4.148 28 C -0.149 4.149 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.230 0.770 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.129 0.871 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.482 3.864 27.039 27.858 hybrid contribution 0.636 -1.214 -0.846 1.610 sum -4.847 2.650 26.193 26.769 Atomic orbital electron populations 1.22327 0.95537 1.02249 1.02405 1.21116 0.93672 0.96763 0.83274 0.90316 1.44799 1.73029 1.12075 1.06620 1.17511 0.90035 0.91448 0.85149 1.20529 1.15824 0.92918 0.99370 1.20813 0.93480 0.99640 0.90589 1.20235 1.15528 0.92095 1.00659 1.19629 0.91189 0.92545 0.86392 1.83947 1.72161 1.27578 1.30316 1.21814 1.40424 0.86397 0.99872 0.88453 1.26574 0.96497 1.05164 0.93924 1.70196 1.43822 1.39575 1.02536 0.84539 0.78185 0.74148 0.79361 1.17664 1.19244 1.19305 1.20501 1.19470 1.00841 0.93419 1.21320 0.95234 0.99591 0.93606 0.90923 1.21577 0.95316 1.00143 0.97687 1.21021 0.99192 0.95398 0.94912 1.21527 0.96327 0.95789 1.01506 1.21617 0.95204 0.96203 1.02339 1.21062 1.00269 0.94759 0.93293 1.21526 0.95251 1.00547 0.97473 1.21519 0.96166 1.00103 0.97098 0.92771 0.89605 0.93562 0.77047 0.84340 0.83224 0.87733 0.91918 0.87122 0.92566 0.93348 0.91994 0.93270 0.91343 0.91972 0.90785 0.89671 0.90854 0.91887 0.92375 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.07 71.98 0.65 -2.46 16 2 C 0.16 3.20 1.27 44.99 0.06 3.26 16 3 H 0.08 1.70 4.77 -2.39 -0.01 1.68 16 4 N -0.74 -20.46 4.54 -319.02 -1.45 -21.91 16 5 C 0.26 9.56 6.63 38.20 0.25 9.81 16 6 C -0.26 -8.74 8.85 22.43 0.20 -8.54 16 7 C -0.03 -0.95 10.03 22.23 0.22 -0.72 16 8 C -0.26 -12.02 9.99 22.42 0.22 -11.80 16 9 C 0.15 8.09 6.64 22.56 0.15 8.24 16 10 O -0.23 -14.70 9.76 -22.83 -0.22 -14.92 16 11 C -0.41 -24.72 9.49 67.92 0.64 -24.07 16 12 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 13 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 14 N -0.92 -58.20 13.67 21.61 0.30 -57.90 16 15 Si 1.02 44.18 29.55 68.60 2.03 46.20 16 16 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 C -0.32 -14.64 9.01 22.52 0.20 -14.43 16 20 C -0.08 -1.32 1.86 -10.80 -0.02 -1.34 16 21 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 22 C -0.11 -2.12 5.11 30.59 0.16 -1.96 16 23 C -0.09 -1.41 3.19 -10.81 -0.03 -1.45 16 24 C -0.11 -1.74 5.71 30.60 0.17 -1.57 16 25 C -0.12 -1.54 5.36 30.61 0.16 -1.37 16 26 C -0.08 -0.97 2.37 -10.78 -0.03 -1.00 16 27 C -0.11 -1.29 5.71 30.59 0.17 -1.12 16 28 C -0.11 -1.47 5.70 30.58 0.17 -1.30 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.09 1.18 6.43 -2.39 -0.02 1.16 16 31 H 0.05 1.02 7.70 -2.39 -0.02 1.00 16 32 H 0.40 10.70 8.61 -92.71 -0.80 9.91 16 33 H 0.14 3.67 6.10 -2.91 -0.02 3.66 16 34 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.11 5.24 5.64 -2.91 -0.02 5.22 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.18 7.26 -2.38 -0.02 1.16 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.88 6.43 -2.39 -0.02 0.87 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.09 0.96 6.43 -2.38 -0.02 0.95 16 46 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -71.70 368.89 4.64 -67.07 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.15 Total: 34.26 kcal Atomic # 6 Polarization: -56.64 SS G_CDS: 3.84 Total: -52.80 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -1.15 Total: -79.81 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.22 Total: -14.92 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -71.70 4.64 -67.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381659069.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.296 kcal (2) G-P(sol) polarization free energy of solvation -71.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds