Wall clock time and date at job start Tue Mar 31 2020 11:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47133 * 2 1 4 4 N 1.46496 * 109.47388 * 119.99795 * 2 1 3 5 5 C 1.39675 * 120.00064 * 275.00370 * 4 2 1 6 6 C 1.39007 * 120.04127 * 359.97438 * 5 4 2 7 7 C 1.38151 * 120.06059 * 179.76771 * 6 5 4 8 8 C 1.38168 * 120.14403 * 0.51117 * 7 6 5 9 9 C 1.38918 * 120.08080 * 359.49016 * 8 7 6 10 10 O 1.35746 * 120.03340 * 180.27890 * 9 8 7 11 11 C 1.34830 * 116.99958 * 174.45722 * 10 9 8 12 12 H 1.08000 * 120.00345 * 5.05175 * 11 10 9 13 13 C 1.38657 * 120.00160 * 185.05515 * 11 10 9 14 14 N 1.31553 * 120.00075 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99520 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47079 * 90.00118 * 15 13 11 17 17 H 1.48500 * 109.46888 * 209.99527 * 15 13 11 18 18 H 1.48497 * 109.47095 * 329.99939 * 15 13 11 19 19 C 1.38749 * 120.03921 * 179.97438 * 5 4 2 20 20 C 1.52999 * 109.47444 * 240.00034 * 2 1 3 21 21 H 1.08998 * 109.47099 * 304.94308 * 20 2 1 22 22 C 1.53008 * 109.47108 * 64.93789 * 20 2 1 23 23 C 1.53000 * 109.46918 * 120.00295 * 22 20 2 24 24 C 1.53001 * 109.47100 * 299.99951 * 23 22 20 25 25 C 1.53003 * 109.46915 * 60.00416 * 24 23 22 26 26 C 1.52998 * 109.47556 * 359.97438 * 25 24 23 27 27 C 1.53007 * 109.46554 * 59.99948 * 26 25 24 28 28 C 1.52994 * 109.47396 * 300.00208 * 27 26 25 29 29 H 1.09003 * 109.47226 * 54.95895 * 1 2 3 30 30 H 1.09004 * 109.46927 * 174.95594 * 1 2 3 31 31 H 1.08997 * 109.47493 * 294.95081 * 1 2 3 32 32 H 0.97004 * 120.00052 * 95.00401 * 4 2 1 33 33 H 1.08000 * 119.96567 * 0.02562 * 6 5 4 34 34 H 1.07994 * 119.92391 * 180.25119 * 7 6 5 35 35 H 1.07994 * 119.95883 * 179.76380 * 8 7 6 36 36 H 0.96999 * 119.99859 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.07524 * 0.02562 * 19 5 4 38 38 H 1.08997 * 109.46886 * 239.99958 * 22 20 2 39 39 H 1.08997 * 109.46598 * 0.02562 * 22 20 2 40 40 H 1.08998 * 109.47239 * 180.02562 * 23 22 20 41 41 H 1.09005 * 109.46972 * 179.97438 * 24 23 22 42 42 H 1.08991 * 109.47397 * 300.00208 * 24 23 22 43 43 H 1.09004 * 109.46579 * 239.99609 * 25 24 23 44 44 H 1.09003 * 109.47287 * 120.00085 * 25 24 23 45 45 H 1.08997 * 109.47403 * 179.97438 * 26 25 24 46 46 H 1.09009 * 109.46599 * 180.02562 * 27 26 25 47 47 H 1.08994 * 109.46814 * 60.00598 * 27 26 25 48 48 H 1.09003 * 109.47070 * 240.00409 * 28 27 26 49 49 H 1.08996 * 109.46978 * 120.00474 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1517 0.0063 2.3993 6 6 1.8217 1.3551 2.4626 7 6 1.9489 2.0435 3.6535 8 6 2.4142 1.3969 4.7825 9 6 2.7457 0.0490 4.7260 10 8 3.1973 -0.5867 5.8371 11 6 3.3915 -1.9177 5.7444 12 1 3.2675 -2.4167 4.7947 13 6 3.7504 -2.6459 6.8685 14 7 3.9395 -3.9447 6.7781 15 14 3.9642 -1.7829 8.5113 16 1 2.6687 -1.7723 9.2371 17 1 4.9791 -2.5039 9.3208 18 1 4.4145 -0.3866 8.2821 19 6 2.6137 -0.6471 3.5328 20 6 2.0400 -0.7212 -1.2492 21 1 1.6062 -1.7201 -1.2946 22 6 1.6339 0.0682 -2.4954 23 6 2.8882 0.4860 -3.2656 24 6 3.7678 1.3619 -2.3712 25 6 4.1739 0.5724 -1.1250 26 6 3.5645 -0.8295 -1.1883 27 6 4.0741 -1.5510 -2.4377 28 6 3.6681 -0.7616 -3.6838 29 1 -0.3634 0.5901 -0.8414 30 1 -0.3633 -1.0237 -0.0904 31 1 -0.3634 0.4335 0.9317 32 1 2.2491 -1.6317 1.1526 33 1 1.4617 1.8643 1.5808 34 1 1.6881 3.0904 3.7012 35 1 2.5160 1.9389 5.7110 36 1 4.1902 -4.4541 7.5646 37 1 2.8711 -1.6949 3.4864 38 1 1.0074 -0.5559 -3.1326 39 1 1.0781 0.9571 -2.1972 40 1 2.5990 1.0487 -4.1531 41 1 4.6616 1.6592 -2.9197 42 1 3.2117 2.2506 -2.0730 43 1 3.8105 1.0864 -0.2350 44 1 5.2603 0.4952 -1.0818 45 1 3.8542 -1.3921 -0.3008 46 1 3.6396 -2.5497 -2.4831 47 1 5.1604 -1.6286 -2.3947 48 1 3.0411 -1.3855 -4.3208 49 1 4.5616 -0.4644 -4.2327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381659085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:08 Heat of formation + Delta-G solvation = -24.370687 kcal Electronic energy + Delta-G solvation = -27040.972487 eV Core-core repulsion = 23546.140548 eV Total energy + Delta-G solvation = -3494.831939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.95507 -39.09900 -37.30078 -35.37206 -32.42552 -32.05925 -31.49391 -30.96631 -29.41624 -28.58036 -27.70245 -25.12980 -23.73169 -22.68333 -22.06968 -21.73998 -21.26673 -19.92231 -17.83294 -17.59693 -16.69027 -16.52701 -16.11733 -15.89093 -15.20386 -15.11422 -14.55213 -14.03037 -13.85843 -13.58658 -13.31026 -13.15351 -12.92613 -12.75851 -12.41034 -12.20997 -12.18748 -12.15150 -12.12258 -12.06781 -12.00976 -11.85634 -11.69062 -11.37604 -11.13485 -10.80170 -10.78791 -10.62404 -10.46698 -10.16463 -9.93783 -9.88754 -9.82916 -9.37756 -9.35998 -8.77005 -7.41705 -6.76757 -6.35125 -4.01604 2.34851 2.52488 3.26492 3.30198 3.45565 3.79625 4.29742 4.34168 4.40531 4.52738 4.67814 4.88012 4.99071 5.03618 5.12094 5.16005 5.19496 5.20280 5.22960 5.25105 5.31411 5.40194 5.44270 5.48341 5.54410 5.63267 5.68149 5.74630 5.85720 5.92417 5.94669 5.98062 6.02208 6.12049 6.15903 6.19789 6.20832 6.26949 6.31791 6.35859 6.39163 6.41942 6.57673 6.65407 7.03374 7.27967 7.33520 7.58854 7.86388 7.99675 8.11981 8.26728 9.01309 9.66620 10.72908 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019213 B = 0.003217 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.993658 B = 8701.073145 C = 9313.723790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.158 3.842 3 H 0.080 0.920 4 N -0.745 5.745 5 C 0.254 3.746 6 C -0.274 4.274 7 C -0.041 4.041 8 C -0.240 4.240 9 C 0.196 3.804 10 O -0.219 6.219 11 C -0.385 4.385 12 H 0.105 0.895 13 C 0.062 3.938 14 N -0.884 5.884 15 Si 0.904 3.096 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.259 1.259 19 C -0.292 4.292 20 C -0.087 4.087 21 H 0.071 0.929 22 C -0.105 4.105 23 C -0.086 4.086 24 C -0.113 4.113 25 C -0.115 4.115 26 C -0.079 4.079 27 C -0.115 4.115 28 C -0.112 4.112 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.394 0.606 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.278 0.722 37 H 0.129 0.871 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 8.482 -20.494 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.053 3.947 3 H 0.098 0.902 4 N -0.375 5.375 5 C 0.152 3.848 6 C -0.296 4.296 7 C -0.060 4.060 8 C -0.261 4.261 9 C 0.144 3.856 10 O -0.124 6.124 11 C -0.461 4.461 12 H 0.122 0.878 13 C -0.141 4.141 14 N -0.522 5.522 15 Si 0.730 3.270 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.183 1.183 19 C -0.316 4.316 20 C -0.106 4.106 21 H 0.089 0.911 22 C -0.143 4.143 23 C -0.104 4.104 24 C -0.150 4.150 25 C -0.152 4.152 26 C -0.097 4.097 27 C -0.152 4.152 28 C -0.150 4.150 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.228 0.772 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.270 8.482 -20.277 22.221 hybrid contribution 0.172 -0.366 0.651 0.766 sum -3.098 8.116 -19.625 21.462 Atomic orbital electron populations 1.22346 0.96589 1.01940 1.01998 1.20914 0.92890 0.96911 0.84034 0.90242 1.44653 1.73994 1.11985 1.06900 1.17458 0.91511 0.90790 0.84994 1.20148 1.17520 0.93479 0.98484 1.20363 0.95911 0.97913 0.91815 1.20002 1.13579 0.93100 0.99401 1.18800 0.89643 0.91242 0.85957 1.83579 1.73415 1.23313 1.32119 1.20751 1.47660 0.78778 0.98908 0.87753 1.24453 0.95930 0.94775 0.98905 1.69647 1.45930 1.05397 1.31255 0.86197 0.78335 0.80465 0.82006 1.19966 1.20920 1.18336 1.20610 1.17006 1.01667 0.92330 1.21396 0.95659 0.99438 0.94102 0.91083 1.21591 0.96871 0.99970 0.95894 1.21020 0.95402 0.96189 0.97784 1.21542 0.99146 0.97909 0.96438 1.21541 1.00138 0.95499 0.98041 1.20991 0.94228 0.96568 0.97919 1.21555 1.00609 0.98547 0.94517 1.21525 0.99622 0.96480 0.97358 0.92373 0.92748 0.91931 0.77155 0.87682 0.87219 0.87096 0.91213 0.85331 0.91988 0.91500 0.91525 0.92367 0.92188 0.91250 0.92327 0.90686 0.92198 0.92102 0.92310 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.14 37.15 0.34 -1.53 16 2 C 0.16 1.82 1.13 -67.94 -0.08 1.74 16 3 H 0.08 0.96 5.04 -51.93 -0.26 0.70 16 4 N -0.74 -10.76 4.50 -52.19 -0.23 -10.99 16 5 C 0.25 4.60 6.63 -83.81 -0.56 4.05 16 6 C -0.27 -4.66 8.85 -39.33 -0.35 -5.00 16 7 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 8 C -0.24 -4.95 9.99 -39.36 -0.39 -5.34 16 9 C 0.20 4.66 6.64 -39.13 -0.26 4.40 16 10 O -0.22 -5.94 8.58 0.06 0.00 -5.93 16 11 C -0.39 -11.05 9.94 30.89 0.31 -10.74 16 12 H 0.11 3.06 5.43 -52.49 -0.29 2.77 16 13 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 14 N -0.88 -25.87 13.96 55.48 0.77 -25.10 16 15 Si 0.90 22.09 28.62 -169.99 -4.86 17.23 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.26 -6.37 7.11 56.52 0.40 -5.96 16 19 C -0.29 -6.40 9.01 -39.20 -0.35 -6.76 16 20 C -0.09 -0.85 1.84 -90.64 -0.17 -1.02 16 21 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 22 C -0.11 -0.88 4.91 -26.73 -0.13 -1.01 16 23 C -0.09 -0.70 3.19 -90.64 -0.29 -0.99 16 24 C -0.11 -1.01 5.71 -26.73 -0.15 -1.16 16 25 C -0.11 -1.23 5.36 -26.73 -0.14 -1.37 16 26 C -0.08 -0.82 2.50 -90.64 -0.23 -1.05 16 27 C -0.11 -1.06 5.71 -26.73 -0.15 -1.21 16 28 C -0.11 -0.91 5.71 -26.76 -0.15 -1.07 16 29 H 0.06 0.53 6.89 -51.93 -0.36 0.17 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.79 7.81 -51.93 -0.41 0.39 16 32 H 0.39 5.60 8.09 -40.82 -0.33 5.27 16 33 H 0.11 1.55 6.20 -52.49 -0.33 1.23 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.13 2.99 5.64 -52.49 -0.30 2.69 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.55 6.54 -51.93 -0.34 0.21 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.86 6.54 -51.93 -0.34 0.52 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.91 7.13 -51.93 -0.37 0.54 16 46 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -29.32 368.08 -9.97 -39.29 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.94 Total: 7.47 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -3.25 Total: -27.50 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.54 Total: -36.09 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: 0.00 Total: -5.93 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.86 Total: 17.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.32 -9.97 -39.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381659085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.920 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds