Wall clock time and date at job start Tue Mar 31 2020 11:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47133 * 2 1 4 4 N 1.46496 * 109.47388 * 119.99795 * 2 1 3 5 5 C 1.39675 * 120.00064 * 275.00370 * 4 2 1 6 6 C 1.39007 * 120.04127 * 359.97438 * 5 4 2 7 7 C 1.38151 * 120.06059 * 179.76771 * 6 5 4 8 8 C 1.38168 * 120.14403 * 0.51117 * 7 6 5 9 9 C 1.38918 * 120.08080 * 359.49016 * 8 7 6 10 10 O 1.35746 * 120.03340 * 180.27890 * 9 8 7 11 11 C 1.34830 * 116.99958 * 174.45722 * 10 9 8 12 12 H 1.08000 * 120.00345 * 5.05175 * 11 10 9 13 13 C 1.38657 * 120.00160 * 185.05515 * 11 10 9 14 14 N 1.31553 * 120.00075 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99520 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47079 * 90.00118 * 15 13 11 17 17 H 1.48500 * 109.46888 * 209.99527 * 15 13 11 18 18 H 1.48497 * 109.47095 * 329.99939 * 15 13 11 19 19 C 1.38749 * 120.03921 * 179.97438 * 5 4 2 20 20 C 1.52999 * 109.47444 * 240.00034 * 2 1 3 21 21 H 1.08998 * 109.47099 * 304.94308 * 20 2 1 22 22 C 1.53008 * 109.47108 * 64.93789 * 20 2 1 23 23 C 1.53000 * 109.46918 * 120.00295 * 22 20 2 24 24 C 1.53001 * 109.47100 * 299.99951 * 23 22 20 25 25 C 1.53003 * 109.46915 * 60.00416 * 24 23 22 26 26 C 1.52998 * 109.47556 * 359.97438 * 25 24 23 27 27 C 1.53007 * 109.46554 * 59.99948 * 26 25 24 28 28 C 1.52994 * 109.47396 * 300.00208 * 27 26 25 29 29 H 1.09003 * 109.47226 * 54.95895 * 1 2 3 30 30 H 1.09004 * 109.46927 * 174.95594 * 1 2 3 31 31 H 1.08997 * 109.47493 * 294.95081 * 1 2 3 32 32 H 0.97004 * 120.00052 * 95.00401 * 4 2 1 33 33 H 1.08000 * 119.96567 * 0.02562 * 6 5 4 34 34 H 1.07994 * 119.92391 * 180.25119 * 7 6 5 35 35 H 1.07994 * 119.95883 * 179.76380 * 8 7 6 36 36 H 0.96999 * 119.99859 * 180.02562 * 14 13 11 37 37 H 1.08001 * 120.07524 * 0.02562 * 19 5 4 38 38 H 1.08997 * 109.46886 * 239.99958 * 22 20 2 39 39 H 1.08997 * 109.46598 * 0.02562 * 22 20 2 40 40 H 1.08998 * 109.47239 * 180.02562 * 23 22 20 41 41 H 1.09005 * 109.46972 * 179.97438 * 24 23 22 42 42 H 1.08991 * 109.47397 * 300.00208 * 24 23 22 43 43 H 1.09004 * 109.46579 * 239.99609 * 25 24 23 44 44 H 1.09003 * 109.47287 * 120.00085 * 25 24 23 45 45 H 1.08997 * 109.47403 * 179.97438 * 26 25 24 46 46 H 1.09009 * 109.46599 * 180.02562 * 27 26 25 47 47 H 1.08994 * 109.46814 * 60.00598 * 27 26 25 48 48 H 1.09003 * 109.47070 * 240.00409 * 28 27 26 49 49 H 1.08996 * 109.46978 * 120.00474 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1961 5 6 2.1517 0.0063 2.3993 6 6 1.8217 1.3551 2.4626 7 6 1.9489 2.0435 3.6535 8 6 2.4142 1.3969 4.7825 9 6 2.7457 0.0490 4.7260 10 8 3.1973 -0.5867 5.8371 11 6 3.3915 -1.9177 5.7444 12 1 3.2675 -2.4167 4.7947 13 6 3.7504 -2.6459 6.8685 14 7 3.9395 -3.9447 6.7781 15 14 3.9642 -1.7829 8.5113 16 1 2.6687 -1.7723 9.2371 17 1 4.9791 -2.5039 9.3208 18 1 4.4145 -0.3866 8.2821 19 6 2.6137 -0.6471 3.5328 20 6 2.0400 -0.7212 -1.2492 21 1 1.6062 -1.7201 -1.2946 22 6 1.6339 0.0682 -2.4954 23 6 2.8882 0.4860 -3.2656 24 6 3.7678 1.3619 -2.3712 25 6 4.1739 0.5724 -1.1250 26 6 3.5645 -0.8295 -1.1883 27 6 4.0741 -1.5510 -2.4377 28 6 3.6681 -0.7616 -3.6838 29 1 -0.3634 0.5901 -0.8414 30 1 -0.3633 -1.0237 -0.0904 31 1 -0.3634 0.4335 0.9317 32 1 2.2491 -1.6317 1.1526 33 1 1.4617 1.8643 1.5808 34 1 1.6881 3.0904 3.7012 35 1 2.5160 1.9389 5.7110 36 1 4.1902 -4.4541 7.5646 37 1 2.8711 -1.6949 3.4864 38 1 1.0074 -0.5559 -3.1326 39 1 1.0781 0.9571 -2.1972 40 1 2.5990 1.0487 -4.1531 41 1 4.6616 1.6592 -2.9197 42 1 3.2117 2.2506 -2.0730 43 1 3.8105 1.0864 -0.2350 44 1 5.2603 0.4952 -1.0818 45 1 3.8542 -1.3921 -0.3008 46 1 3.6396 -2.5497 -2.4831 47 1 5.1604 -1.6286 -2.3947 48 1 3.0411 -1.3855 -4.3208 49 1 4.5616 -0.4644 -4.2327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381659085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:07 Heat of formation + Delta-G solvation = -38.995265 kcal Electronic energy + Delta-G solvation = -27041.606656 eV Core-core repulsion = 23546.140548 eV Total energy + Delta-G solvation = -3495.466109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79300 -40.76368 -38.84687 -36.67964 -34.42977 -33.33105 -32.27222 -31.71872 -30.83301 -29.81857 -29.00608 -27.13912 -24.66551 -23.52032 -23.30452 -22.77689 -22.55375 -21.19137 -19.76131 -19.17426 -17.67742 -17.44342 -17.16220 -16.83980 -16.63276 -16.50293 -15.96016 -15.67840 -15.50646 -15.13989 -14.65083 -14.42402 -14.10870 -14.03303 -13.85364 -13.63458 -13.17576 -13.10843 -12.93027 -12.89690 -12.85903 -12.80940 -12.76945 -12.64794 -12.50842 -12.28685 -12.16857 -11.99115 -11.81984 -11.39892 -11.31757 -11.01252 -10.73557 -10.69541 -10.61455 -10.50977 -9.16195 -8.48643 -8.19840 -6.20808 0.75757 0.91366 1.30855 1.35958 1.52416 2.29135 2.56917 2.83161 3.16284 3.27847 3.54833 3.64924 3.77154 4.06439 4.19446 4.22561 4.28617 4.41115 4.44434 4.47588 4.49551 4.50442 4.56563 4.58059 4.60249 4.62534 4.70696 4.73416 4.78550 4.87184 4.88942 5.00376 5.07170 5.13823 5.17170 5.19776 5.28506 5.35658 5.41453 5.45825 5.47174 5.48403 5.50785 5.52324 5.56155 5.63353 5.77487 5.86167 5.92385 6.20496 6.65574 6.86262 6.86672 7.64463 8.63281 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.019213 B = 0.003217 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.993658 B = 8701.073145 C = 9313.723790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.157 3.843 3 H 0.082 0.918 4 N -0.738 5.738 5 C 0.261 3.739 6 C -0.257 4.257 7 C -0.027 4.027 8 C -0.254 4.254 9 C 0.159 3.841 10 O -0.247 6.247 11 C -0.395 4.395 12 H 0.078 0.922 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.971 3.029 16 H -0.266 1.266 17 H -0.267 1.267 18 H -0.264 1.264 19 C -0.315 4.315 20 C -0.080 4.080 21 H 0.070 0.930 22 C -0.102 4.102 23 C -0.083 4.083 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.080 4.080 27 C -0.114 4.114 28 C -0.110 4.110 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.393 0.607 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.119 0.881 36 H 0.284 0.716 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.069 0.931 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 11.327 -22.884 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.053 3.947 3 H 0.100 0.900 4 N -0.366 5.366 5 C 0.156 3.844 6 C -0.280 4.280 7 C -0.045 4.045 8 C -0.275 4.275 9 C 0.110 3.890 10 O -0.154 6.154 11 C -0.472 4.472 12 H 0.095 0.905 13 C -0.189 4.189 14 N -0.567 5.567 15 Si 0.793 3.207 16 H -0.191 1.191 17 H -0.192 1.192 18 H -0.188 1.188 19 C -0.339 4.339 20 C -0.099 4.099 21 H 0.088 0.912 22 C -0.140 4.140 23 C -0.102 4.102 24 C -0.147 4.147 25 C -0.151 4.151 26 C -0.099 4.099 27 C -0.152 4.152 28 C -0.148 4.148 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.227 0.773 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.717 11.338 -22.736 25.841 hybrid contribution 0.544 -1.141 1.082 1.664 sum -4.173 10.198 -21.654 24.296 Atomic orbital electron populations 1.22306 0.95463 1.02293 1.02358 1.21155 0.93573 0.96813 0.83201 0.90006 1.44866 1.72859 1.12031 1.06823 1.17541 0.90244 0.91569 0.85017 1.20592 1.15166 0.92588 0.99662 1.20867 0.93395 0.99830 0.90437 1.20279 1.14207 0.91784 1.01205 1.19392 0.91164 0.92716 0.85753 1.83518 1.75952 1.22096 1.33822 1.20684 1.48143 0.80027 0.98310 0.90494 1.25275 0.95762 0.95465 1.02404 1.69732 1.47745 1.06691 1.32535 0.85219 0.78878 0.78975 0.77649 1.19070 1.19156 1.18789 1.20562 1.18883 1.00664 0.93778 1.21344 0.94775 0.99598 0.94186 0.91199 1.21601 0.97260 1.00205 0.94934 1.21037 0.94950 0.96015 0.98149 1.21534 0.99748 0.97916 0.95544 1.21506 0.99496 0.95655 0.98483 1.20958 0.95052 0.96358 0.97496 1.21542 1.00236 0.98737 0.94693 1.21526 1.00133 0.96526 0.96578 0.89570 0.92965 0.93475 0.77338 0.84212 0.82678 0.86278 0.90683 0.88208 0.90671 0.90578 0.89692 0.91826 0.91543 0.93053 0.93339 0.93464 0.92187 0.92729 0.91274 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.14 71.98 0.66 -2.48 16 2 C 0.16 3.26 1.13 44.99 0.05 3.31 16 3 H 0.08 1.71 5.04 -2.39 -0.01 1.70 16 4 N -0.74 -21.20 4.50 -319.03 -1.43 -22.63 16 5 C 0.26 9.41 6.63 38.20 0.25 9.67 16 6 C -0.26 -8.06 8.85 22.43 0.20 -7.86 16 7 C -0.03 -0.86 10.03 22.23 0.22 -0.63 16 8 C -0.25 -10.32 9.99 22.42 0.22 -10.10 16 9 C 0.16 7.89 6.64 22.56 0.15 8.04 16 10 O -0.25 -14.04 8.58 -22.70 -0.19 -14.23 16 11 C -0.40 -24.21 9.94 67.92 0.68 -23.53 16 12 H 0.08 4.96 5.43 -2.91 -0.02 4.95 16 13 C 0.01 0.52 5.49 84.83 0.47 0.99 16 14 N -0.93 -56.75 13.96 21.61 0.30 -56.45 16 15 Si 0.97 46.94 28.62 68.60 1.96 48.91 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16 19 C -0.31 -14.57 9.01 22.52 0.20 -14.36 16 20 C -0.08 -1.41 1.84 -10.81 -0.02 -1.43 16 21 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 22 C -0.10 -1.32 4.91 30.60 0.15 -1.17 16 23 C -0.08 -1.06 3.19 -10.81 -0.03 -1.09 16 24 C -0.11 -1.66 5.71 30.60 0.17 -1.49 16 25 C -0.11 -2.32 5.36 30.59 0.16 -2.16 16 26 C -0.08 -1.63 2.50 -10.81 -0.03 -1.65 16 27 C -0.11 -2.00 5.71 30.59 0.17 -1.83 16 28 C -0.11 -1.49 5.71 30.58 0.17 -1.32 16 29 H 0.09 1.18 6.89 -2.39 -0.02 1.17 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.05 1.05 7.81 -2.39 -0.02 1.03 16 32 H 0.39 11.65 8.09 -92.70 -0.75 10.90 16 33 H 0.14 3.47 6.20 -2.91 -0.02 3.45 16 34 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 35 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 36 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 37 H 0.10 5.13 5.64 -2.91 -0.02 5.11 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.88 6.54 -2.39 -0.02 0.87 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 1.21 6.54 -2.38 -0.02 1.19 16 44 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 1.20 7.13 -2.39 -0.02 1.19 16 46 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 47 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -67.98 368.08 4.69 -63.29 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.19 Total: 30.21 kcal Atomic # 6 Polarization: -52.96 SS G_CDS: 3.86 Total: -49.10 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -1.13 Total: -79.08 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.19 Total: -14.23 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.96 Total: 48.91 kcal Total: -67.98 4.69 -63.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381659085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.298 kcal (2) G-P(sol) polarization free energy of solvation -67.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds