Wall clock time and date at job start Tue Mar 31 2020 11:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46951 * 2 1 4 4 N 1.46502 * 109.47046 * 119.99908 * 2 1 3 5 5 C 1.39778 * 119.99807 * 275.00073 * 4 2 1 6 6 C 1.38952 * 120.00440 * 179.97438 * 5 4 2 7 7 C 1.38009 * 119.99302 * 180.02562 * 6 5 4 8 8 C 1.38894 * 120.00989 * 0.02562 * 7 6 5 9 9 O 1.35795 * 119.99720 * 179.97438 * 8 7 6 10 10 C 1.34809 * 117.00002 * 5.54501 * 9 8 7 11 11 H 1.08002 * 119.99797 * 354.94548 * 10 9 8 12 12 C 1.38618 * 120.00221 * 174.94109 * 10 9 8 13 13 N 1.31578 * 119.99901 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00112 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47179 * 270.00141 * 14 12 10 16 16 H 1.48504 * 109.46901 * 150.00102 * 14 12 10 17 17 H 1.48495 * 109.47034 * 30.00493 * 14 12 10 18 18 C 1.38902 * 120.00851 * 0.23143 * 8 7 6 19 19 C 1.38006 * 120.00862 * 359.48952 * 18 8 7 20 20 C 1.52997 * 109.47069 * 239.99918 * 2 1 3 21 21 H 1.09001 * 109.47196 * 304.94246 * 20 2 1 22 22 C 1.52999 * 109.47241 * 64.94217 * 20 2 1 23 23 C 1.53000 * 109.47127 * 119.99845 * 22 20 2 24 24 C 1.53006 * 109.47119 * 299.99863 * 23 22 20 25 25 C 1.52995 * 109.46752 * 60.00289 * 24 23 22 26 26 C 1.52998 * 109.47195 * 184.94071 * 20 2 1 27 27 C 1.52997 * 109.47195 * 179.97438 * 26 20 2 28 28 C 1.52997 * 109.47410 * 60.00325 * 23 22 20 29 29 H 1.09002 * 109.47386 * 294.95595 * 1 2 3 30 30 H 1.09003 * 109.47079 * 54.95366 * 1 2 3 31 31 H 1.08997 * 109.47046 * 174.95616 * 1 2 3 32 32 H 0.96998 * 119.99933 * 94.99901 * 4 2 1 33 33 H 1.07994 * 120.00260 * 0.04804 * 6 5 4 34 34 H 1.08005 * 119.99660 * 180.02562 * 7 6 5 35 35 H 0.96998 * 120.00072 * 359.97438 * 13 12 10 36 36 H 1.08007 * 119.99504 * 179.74291 * 18 8 7 37 37 H 1.07993 * 120.00878 * 180.27273 * 19 18 8 38 38 H 1.09000 * 109.47723 * 239.99979 * 22 20 2 39 39 H 1.09007 * 109.47220 * 0.02562 * 22 20 2 40 40 H 1.09006 * 109.46935 * 180.02562 * 23 22 20 41 41 H 1.09000 * 109.46956 * 180.02562 * 24 23 22 42 42 H 1.08993 * 109.47053 * 300.00226 * 24 23 22 43 43 H 1.09003 * 109.47039 * 239.99747 * 25 24 23 44 44 H 1.08999 * 109.47535 * 119.99545 * 25 24 23 45 45 H 1.09006 * 109.47098 * 60.00160 * 26 20 2 46 46 H 1.08994 * 109.47492 * 300.00043 * 27 26 20 47 47 H 1.09006 * 109.47120 * 180.02562 * 27 26 20 48 48 H 1.09004 * 109.47171 * 59.99566 * 28 23 22 49 49 H 1.08997 * 109.47103 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1518 0.0068 2.4002 6 6 2.6145 -0.6483 3.5350 7 6 2.7456 0.0404 4.7238 8 6 2.4148 1.3879 4.7862 9 8 2.5434 2.0651 5.9562 10 6 3.1047 1.4033 6.9878 11 1 3.3536 0.3572 6.8870 12 6 3.3624 2.0654 8.1781 13 7 3.0587 3.3397 8.3011 14 14 4.1394 1.1482 9.6079 15 1 3.0726 0.5576 10.4555 16 1 4.9507 2.0914 10.4187 17 1 5.0127 0.0664 9.0860 18 6 1.9472 2.0416 3.6533 19 6 1.8213 1.3550 2.4628 20 6 2.0400 -0.7213 -1.2492 21 1 1.6062 -1.7202 -1.2946 22 6 1.6340 0.0681 -2.4954 23 6 2.8883 0.4859 -3.2655 24 6 3.7679 1.3619 -2.3711 25 6 4.1739 0.5724 -1.1250 26 6 3.5649 -0.8298 -1.1887 27 6 4.0749 -1.5516 -2.4376 28 6 3.6690 -0.7616 -3.6841 29 1 -0.3634 0.4336 0.9317 30 1 -0.3633 0.5901 -0.8414 31 1 -0.3633 -1.0237 -0.0903 32 1 2.2490 -1.6317 1.1527 33 1 2.8717 -1.6960 3.4866 34 1 3.1056 -0.4686 5.6058 35 1 2.6548 3.8159 7.5589 36 1 1.6860 3.0884 3.7031 37 1 1.4619 1.8643 1.5809 38 1 1.0074 -0.5558 -3.1326 39 1 1.0782 0.9572 -2.1972 40 1 2.5990 1.0487 -4.1531 41 1 4.6612 1.6598 -2.9199 42 1 3.2117 2.2505 -2.0730 43 1 3.8105 1.0863 -0.2350 44 1 5.2603 0.4950 -1.0818 45 1 3.8542 -1.3922 -0.3008 46 1 3.6411 -2.5505 -2.4825 47 1 5.1613 -1.6293 -2.3942 48 1 3.0423 -1.3856 -4.3213 49 1 4.5628 -0.4639 -4.2323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381781947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:31 Heat of formation + Delta-G solvation = -29.274572 kcal Electronic energy + Delta-G solvation = -26767.763282 eV Core-core repulsion = 23272.718694 eV Total energy + Delta-G solvation = -3495.044588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.99859 -39.03269 -37.30488 -35.27824 -32.34720 -31.71632 -31.34447 -31.01894 -30.22765 -28.76802 -26.99077 -24.77495 -23.57067 -22.74753 -22.26624 -22.04410 -21.01726 -20.21426 -18.15994 -17.31832 -16.72982 -16.67579 -16.23929 -15.93578 -15.62455 -14.87863 -14.35499 -14.03057 -13.74484 -13.63282 -13.33290 -13.13819 -12.84302 -12.81561 -12.48253 -12.43182 -12.25363 -12.20054 -12.17962 -12.13912 -12.06284 -11.75097 -11.48366 -11.28851 -11.13138 -10.80031 -10.76371 -10.61571 -10.25786 -10.18379 -10.00325 -9.93733 -9.87585 -9.26242 -9.14581 -8.38266 -8.19570 -6.62411 -6.39577 -3.88976 2.17351 2.56243 3.29770 3.36545 3.49609 3.81002 4.22789 4.28505 4.35225 4.46909 4.68026 4.83823 4.98684 5.05713 5.09912 5.14181 5.17412 5.19491 5.23865 5.26267 5.32688 5.36820 5.40907 5.44284 5.48563 5.59898 5.62700 5.71627 5.73414 5.78569 5.87322 5.92630 5.96192 6.05954 6.10233 6.16105 6.17805 6.20647 6.25155 6.26813 6.31999 6.36685 6.53154 6.83886 6.91987 7.10366 7.39432 7.52205 7.70169 7.98661 8.25678 8.56611 9.09277 9.81910 10.82859 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026159 B = 0.002663 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.107620 B =10511.617926 C =10661.298514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.161 3.839 3 H 0.076 0.924 4 N -0.752 5.752 5 C 0.133 3.867 6 C -0.145 4.145 7 C -0.185 4.185 8 C 0.115 3.885 9 O -0.214 6.214 10 C -0.468 4.468 11 H 0.079 0.921 12 C 0.006 3.994 13 N -0.891 5.891 14 Si 1.097 2.903 15 H -0.283 1.283 16 H -0.277 1.277 17 H -0.284 1.284 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.085 4.085 21 H 0.069 0.931 22 C -0.106 4.106 23 C -0.086 4.086 24 C -0.114 4.114 25 C -0.115 4.115 26 C -0.076 4.076 27 C -0.114 4.114 28 C -0.112 4.112 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.389 0.611 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.281 0.719 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 -8.973 -23.868 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.055 3.945 3 H 0.094 0.906 4 N -0.386 5.386 5 C 0.035 3.965 6 C -0.167 4.167 7 C -0.205 4.205 8 C 0.063 3.937 9 O -0.120 6.120 10 C -0.544 4.544 11 H 0.097 0.903 12 C -0.198 4.198 13 N -0.525 5.525 14 Si 0.922 3.078 15 H -0.209 1.209 16 H -0.202 1.202 17 H -0.210 1.210 18 C -0.172 4.172 19 C -0.170 4.170 20 C -0.105 4.105 21 H 0.087 0.913 22 C -0.144 4.144 23 C -0.104 4.104 24 C -0.151 4.151 25 C -0.153 4.153 26 C -0.095 4.095 27 C -0.152 4.152 28 C -0.150 4.150 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.222 0.778 33 H 0.123 0.877 34 H 0.145 0.855 35 H 0.091 0.909 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.355 -8.393 -22.293 23.823 hybrid contribution -0.469 -0.755 -1.652 1.875 sum -0.823 -9.147 -23.945 25.646 Atomic orbital electron populations 1.22361 0.96877 1.01743 1.01963 1.20833 0.92689 0.96819 0.84168 0.90575 1.44301 1.76235 1.11372 1.06682 1.17375 1.01521 0.91598 0.86008 1.20242 1.05738 0.98675 0.92045 1.20997 1.06733 0.94610 0.98112 1.19072 0.96758 0.90855 0.87030 1.83668 1.71720 1.40193 1.16455 1.22124 1.43659 0.96406 0.92223 0.90315 1.26412 0.97604 0.96892 0.98912 1.70542 1.37908 1.08582 1.35426 0.83070 0.76262 0.74411 0.74019 1.20902 1.20209 1.21003 1.20006 1.06789 0.99541 0.90911 1.20172 1.06922 0.92809 0.97076 1.21385 0.95538 0.99303 0.94224 0.91264 1.21598 0.96877 1.00040 0.95905 1.21030 0.95386 0.96158 0.97837 1.21543 0.99201 0.97974 0.96399 1.21541 1.00059 0.95490 0.98160 1.20978 0.94316 0.96531 0.97654 1.21565 1.00505 0.98458 0.94670 1.21540 0.99645 0.96502 0.97301 0.92036 0.92452 0.92894 0.77792 0.87667 0.85526 0.90945 0.86851 0.87121 0.92028 0.91451 0.91484 0.92336 0.92107 0.91192 0.92395 0.90889 0.92315 0.92187 0.92320 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 9.14 37.16 0.34 -1.46 16 2 C 0.16 1.74 1.13 -67.93 -0.08 1.66 16 3 H 0.08 0.91 5.04 -51.93 -0.26 0.65 16 4 N -0.75 -9.62 4.50 -52.11 -0.23 -9.85 16 5 C 0.13 2.25 6.64 -83.70 -0.56 1.69 16 6 C -0.14 -2.69 9.89 -39.40 -0.39 -3.08 16 7 C -0.18 -4.13 9.16 -39.42 -0.36 -4.50 16 8 C 0.11 2.84 6.65 -39.09 -0.26 2.58 16 9 O -0.21 -6.23 9.16 -0.03 0.00 -6.23 16 10 C -0.47 -13.57 9.48 30.87 0.29 -13.28 16 11 H 0.08 2.16 5.20 -52.49 -0.27 1.88 16 12 C 0.01 0.17 5.49 -17.52 -0.10 0.07 16 13 N -0.89 -27.44 13.70 55.48 0.76 -26.68 16 14 Si 1.10 24.54 29.92 -169.99 -5.09 19.45 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 18 C -0.15 -3.26 9.98 -39.42 -0.39 -3.66 16 19 C -0.15 -2.65 8.85 -39.40 -0.35 -3.00 16 20 C -0.09 -0.76 1.84 -90.62 -0.17 -0.92 16 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 22 C -0.11 -0.84 4.91 -26.73 -0.13 -0.97 16 23 C -0.09 -0.66 3.19 -90.62 -0.29 -0.95 16 24 C -0.11 -1.00 5.71 -26.73 -0.15 -1.15 16 25 C -0.12 -1.17 5.36 -26.73 -0.14 -1.31 16 26 C -0.08 -0.71 2.50 -90.62 -0.23 -0.93 16 27 C -0.11 -0.92 5.71 -26.70 -0.15 -1.08 16 28 C -0.11 -0.83 5.71 -26.70 -0.15 -0.99 16 29 H 0.06 0.77 7.81 -51.93 -0.41 0.37 16 30 H 0.06 0.51 6.89 -51.93 -0.36 0.16 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.39 4.49 8.09 -40.82 -0.33 4.16 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.13 2.90 5.63 -52.48 -0.30 2.60 16 35 H 0.28 8.84 7.97 -40.82 -0.33 8.51 16 36 H 0.11 2.33 8.06 -52.48 -0.42 1.91 16 37 H 0.11 1.72 6.20 -52.49 -0.33 1.39 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.54 6.54 -51.93 -0.34 0.20 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.85 6.54 -51.93 -0.34 0.51 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.75 7.14 -51.93 -0.37 0.38 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -30.90 368.67 -10.19 -41.09 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.92 Total: 7.93 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: -3.26 Total: -31.27 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.53 Total: -36.53 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: 0.00 Total: -6.23 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.09 Total: 19.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.90 -10.19 -41.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381781947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.812 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds