Wall clock time and date at job start Tue Mar 31 2020 11:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46951 * 2 1 4 4 N 1.46502 * 109.47046 * 119.99908 * 2 1 3 5 5 C 1.39778 * 119.99807 * 275.00073 * 4 2 1 6 6 C 1.38952 * 120.00440 * 179.97438 * 5 4 2 7 7 C 1.38009 * 119.99302 * 180.02562 * 6 5 4 8 8 C 1.38894 * 120.00989 * 0.02562 * 7 6 5 9 9 O 1.35795 * 119.99720 * 179.97438 * 8 7 6 10 10 C 1.34809 * 117.00002 * 5.54501 * 9 8 7 11 11 H 1.08002 * 119.99797 * 354.94548 * 10 9 8 12 12 C 1.38618 * 120.00221 * 174.94109 * 10 9 8 13 13 N 1.31578 * 119.99901 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00112 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47179 * 270.00141 * 14 12 10 16 16 H 1.48504 * 109.46901 * 150.00102 * 14 12 10 17 17 H 1.48495 * 109.47034 * 30.00493 * 14 12 10 18 18 C 1.38902 * 120.00851 * 0.23143 * 8 7 6 19 19 C 1.38006 * 120.00862 * 359.48952 * 18 8 7 20 20 C 1.52997 * 109.47069 * 239.99918 * 2 1 3 21 21 H 1.09001 * 109.47196 * 304.94246 * 20 2 1 22 22 C 1.52999 * 109.47241 * 64.94217 * 20 2 1 23 23 C 1.53000 * 109.47127 * 119.99845 * 22 20 2 24 24 C 1.53006 * 109.47119 * 299.99863 * 23 22 20 25 25 C 1.52995 * 109.46752 * 60.00289 * 24 23 22 26 26 C 1.52998 * 109.47195 * 184.94071 * 20 2 1 27 27 C 1.52997 * 109.47195 * 179.97438 * 26 20 2 28 28 C 1.52997 * 109.47410 * 60.00325 * 23 22 20 29 29 H 1.09002 * 109.47386 * 294.95595 * 1 2 3 30 30 H 1.09003 * 109.47079 * 54.95366 * 1 2 3 31 31 H 1.08997 * 109.47046 * 174.95616 * 1 2 3 32 32 H 0.96998 * 119.99933 * 94.99901 * 4 2 1 33 33 H 1.07994 * 120.00260 * 0.04804 * 6 5 4 34 34 H 1.08005 * 119.99660 * 180.02562 * 7 6 5 35 35 H 0.96998 * 120.00072 * 359.97438 * 13 12 10 36 36 H 1.08007 * 119.99504 * 179.74291 * 18 8 7 37 37 H 1.07993 * 120.00878 * 180.27273 * 19 18 8 38 38 H 1.09000 * 109.47723 * 239.99979 * 22 20 2 39 39 H 1.09007 * 109.47220 * 0.02562 * 22 20 2 40 40 H 1.09006 * 109.46935 * 180.02562 * 23 22 20 41 41 H 1.09000 * 109.46956 * 180.02562 * 24 23 22 42 42 H 1.08993 * 109.47053 * 300.00226 * 24 23 22 43 43 H 1.09003 * 109.47039 * 239.99747 * 25 24 23 44 44 H 1.08999 * 109.47535 * 119.99545 * 25 24 23 45 45 H 1.09006 * 109.47098 * 60.00160 * 26 20 2 46 46 H 1.08994 * 109.47492 * 300.00043 * 27 26 20 47 47 H 1.09006 * 109.47120 * 180.02562 * 27 26 20 48 48 H 1.09004 * 109.47171 * 59.99566 * 28 23 22 49 49 H 1.08997 * 109.47103 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1518 0.0068 2.4002 6 6 2.6145 -0.6483 3.5350 7 6 2.7456 0.0404 4.7238 8 6 2.4148 1.3879 4.7862 9 8 2.5434 2.0651 5.9562 10 6 3.1047 1.4033 6.9878 11 1 3.3536 0.3572 6.8870 12 6 3.3624 2.0654 8.1781 13 7 3.0587 3.3397 8.3011 14 14 4.1394 1.1482 9.6079 15 1 3.0726 0.5576 10.4555 16 1 4.9507 2.0914 10.4187 17 1 5.0127 0.0664 9.0860 18 6 1.9472 2.0416 3.6533 19 6 1.8213 1.3550 2.4628 20 6 2.0400 -0.7213 -1.2492 21 1 1.6062 -1.7202 -1.2946 22 6 1.6340 0.0681 -2.4954 23 6 2.8883 0.4859 -3.2655 24 6 3.7679 1.3619 -2.3711 25 6 4.1739 0.5724 -1.1250 26 6 3.5649 -0.8298 -1.1887 27 6 4.0749 -1.5516 -2.4376 28 6 3.6690 -0.7616 -3.6841 29 1 -0.3634 0.4336 0.9317 30 1 -0.3633 0.5901 -0.8414 31 1 -0.3633 -1.0237 -0.0903 32 1 2.2490 -1.6317 1.1527 33 1 2.8717 -1.6960 3.4866 34 1 3.1056 -0.4686 5.6058 35 1 2.6548 3.8159 7.5589 36 1 1.6860 3.0884 3.7031 37 1 1.4619 1.8643 1.5809 38 1 1.0074 -0.5558 -3.1326 39 1 1.0782 0.9572 -2.1972 40 1 2.5990 1.0487 -4.1531 41 1 4.6612 1.6598 -2.9199 42 1 3.2117 2.2505 -2.0730 43 1 3.8105 1.0863 -0.2350 44 1 5.2603 0.4950 -1.0818 45 1 3.8542 -1.3922 -0.3008 46 1 3.6411 -2.5505 -2.4825 47 1 5.1613 -1.6293 -2.3942 48 1 3.0423 -1.3856 -4.3213 49 1 4.5628 -0.4639 -4.2323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381781947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:30 Heat of formation + Delta-G solvation = -45.468266 kcal Electronic energy + Delta-G solvation = -26768.465493 eV Core-core repulsion = 23272.718694 eV Total energy + Delta-G solvation = -3495.746799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.76795 -40.72373 -38.88514 -36.58362 -34.23731 -32.90189 -32.22466 -31.84178 -31.68654 -29.66203 -28.49360 -26.77112 -24.55240 -23.80489 -23.40409 -22.78732 -22.48560 -21.37214 -20.01532 -18.83887 -18.02756 -17.43619 -17.25373 -16.92250 -16.65428 -16.39299 -15.78951 -15.52941 -15.48283 -15.16015 -14.58907 -14.43218 -14.11375 -13.97561 -13.65451 -13.44979 -13.15411 -13.07825 -12.92559 -12.88054 -12.85957 -12.80736 -12.73510 -12.55626 -12.39565 -12.17470 -12.11012 -11.92019 -11.90605 -11.33677 -11.17977 -10.90728 -10.68717 -10.60490 -10.60147 -10.18281 -9.83418 -8.86813 -7.95269 -6.11625 0.52511 0.89198 1.49217 1.63569 1.78429 2.40554 2.64354 2.92253 3.21019 3.49872 3.57059 3.66324 3.78399 4.03729 4.10249 4.11734 4.24298 4.32886 4.42183 4.47801 4.49964 4.50625 4.52788 4.56634 4.57422 4.62338 4.66441 4.71654 4.79196 4.85973 4.89564 4.95856 5.08616 5.16758 5.18024 5.20654 5.23762 5.29027 5.36286 5.41170 5.46980 5.48685 5.48888 5.52172 5.53444 5.57607 5.64206 5.78989 5.90889 6.31621 6.63742 6.96648 7.05506 7.78387 8.59534 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.026159 B = 0.002663 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.107620 B =10511.617926 C =10661.298514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.158 3.842 3 H 0.067 0.933 4 N -0.735 5.735 5 C 0.167 3.833 6 C -0.149 4.149 7 C -0.189 4.189 8 C 0.061 3.939 9 O -0.264 6.264 10 C -0.480 4.480 11 H 0.087 0.913 12 C -0.051 4.051 13 N -0.926 5.926 14 Si 1.147 2.853 15 H -0.265 1.265 16 H -0.274 1.274 17 H -0.260 1.260 18 C -0.155 4.155 19 C -0.146 4.146 20 C -0.077 4.077 21 H 0.080 0.920 22 C -0.105 4.105 23 C -0.084 4.084 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.076 4.076 27 C -0.112 4.112 28 C -0.111 4.111 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.401 0.599 33 H 0.138 0.862 34 H 0.115 0.885 35 H 0.258 0.742 36 H 0.111 0.889 37 H 0.139 0.861 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.070 0.930 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.080 -11.685 -27.113 29.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.053 3.947 3 H 0.085 0.915 4 N -0.368 5.368 5 C 0.065 3.935 6 C -0.172 4.172 7 C -0.209 4.209 8 C 0.012 3.988 9 O -0.173 6.173 10 C -0.556 4.556 11 H 0.104 0.896 12 C -0.246 4.246 13 N -0.562 5.562 14 Si 0.963 3.037 15 H -0.190 1.190 16 H -0.199 1.199 17 H -0.185 1.185 18 C -0.174 4.174 19 C -0.169 4.169 20 C -0.096 4.096 21 H 0.099 0.901 22 C -0.143 4.143 23 C -0.102 4.102 24 C -0.151 4.151 25 C -0.153 4.153 26 C -0.094 4.094 27 C -0.150 4.150 28 C -0.149 4.149 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.236 0.764 33 H 0.156 0.844 34 H 0.133 0.867 35 H 0.066 0.934 36 H 0.129 0.871 37 H 0.157 0.843 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.682 -11.160 -25.644 27.976 hybrid contribution -0.433 -0.028 -1.074 1.158 sum -1.115 -11.187 -26.718 28.987 Atomic orbital electron populations 1.22316 0.95982 1.02535 1.01735 1.21024 0.93208 0.96493 0.84001 0.91482 1.44424 1.74654 1.11905 1.05835 1.17472 0.97789 0.91220 0.86974 1.20491 1.05512 1.00120 0.91034 1.21048 1.06683 0.93891 0.99289 1.19580 0.99963 0.92289 0.86928 1.83630 1.74113 1.41644 1.17925 1.22529 1.43314 0.96938 0.92845 0.89595 1.28316 0.97452 0.96922 1.01904 1.70685 1.40979 1.09963 1.34588 0.82543 0.76247 0.73910 0.70958 1.19011 1.19893 1.18453 1.20226 1.06144 0.99823 0.91244 1.20411 1.06435 0.93373 0.96636 1.21324 0.95007 0.99741 0.93478 0.90127 1.21610 0.97097 1.00134 0.95458 1.21037 0.95091 0.96208 0.97897 1.21540 0.99632 0.97911 0.96012 1.21518 0.99664 0.96225 0.97920 1.20960 0.94685 0.95782 0.98010 1.21545 1.00374 0.98829 0.94247 1.21543 0.99934 0.96329 0.97044 0.94159 0.90458 0.92024 0.76374 0.84393 0.86721 0.93369 0.87054 0.84287 0.90495 0.91452 0.90385 0.92067 0.92491 0.93493 0.93111 0.91996 0.91418 0.92530 0.91153 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.14 71.98 0.66 -2.27 16 2 C 0.16 2.89 1.13 44.99 0.05 2.94 16 3 H 0.07 1.42 5.04 -2.39 -0.01 1.41 16 4 N -0.74 -16.44 4.50 -318.79 -1.44 -17.88 16 5 C 0.17 5.28 6.64 38.22 0.25 5.53 16 6 C -0.15 -5.30 9.89 22.39 0.22 -5.07 16 7 C -0.19 -8.63 9.16 22.37 0.20 -8.43 16 8 C 0.06 3.17 6.65 22.59 0.15 3.32 16 9 O -0.26 -16.39 9.16 -23.03 -0.21 -16.60 16 10 C -0.48 -29.27 9.48 67.91 0.64 -28.63 16 11 H 0.09 4.90 5.20 -2.91 -0.02 4.89 16 12 C -0.05 -3.07 5.49 84.82 0.47 -2.60 16 13 N -0.93 -60.16 13.70 21.61 0.30 -59.87 16 14 Si 1.15 50.20 29.92 68.60 2.05 52.25 16 15 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 C -0.15 -6.80 9.98 22.37 0.22 -6.57 16 19 C -0.15 -5.08 8.85 22.39 0.20 -4.89 16 20 C -0.08 -1.07 1.84 -10.80 -0.02 -1.09 16 21 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 22 C -0.11 -1.24 4.91 30.59 0.15 -1.09 16 23 C -0.08 -1.02 3.19 -10.79 -0.03 -1.05 16 24 C -0.11 -1.75 5.71 30.59 0.17 -1.57 16 25 C -0.12 -2.16 5.36 30.59 0.16 -1.99 16 26 C -0.08 -1.20 2.50 -10.79 -0.03 -1.22 16 27 C -0.11 -1.46 5.71 30.61 0.17 -1.29 16 28 C -0.11 -1.26 5.71 30.61 0.17 -1.08 16 29 H 0.04 0.89 7.81 -2.39 -0.02 0.87 16 30 H 0.08 1.08 6.89 -2.39 -0.02 1.06 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.40 7.65 8.09 -92.71 -0.75 6.90 16 33 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.12 5.40 5.63 -2.91 -0.02 5.39 16 35 H 0.26 17.50 7.97 -92.71 -0.74 16.76 16 36 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 37 H 0.14 4.03 6.20 -2.91 -0.02 4.01 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.82 6.54 -2.38 -0.02 0.81 16 40 H 0.08 0.82 8.14 -2.38 -0.02 0.81 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 1.08 6.54 -2.39 -0.02 1.06 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 1.11 7.14 -2.38 -0.02 1.09 16 46 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -72.38 368.67 4.76 -67.63 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.23 Total: 31.52 kcal Atomic # 6 Polarization: -60.88 SS G_CDS: 3.83 Total: -57.05 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -1.14 Total: -77.74 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.21 Total: -16.60 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -72.38 4.76 -67.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381781947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.157 kcal (2) G-P(sol) polarization free energy of solvation -72.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds